scholarly journals Candidate Causal Organisms for Apple Replant Disease in the United Kingdom

2018 ◽  
Vol 2 (4) ◽  
pp. 261-274 ◽  
Author(s):  
Emma L. Tilston ◽  
Greg Deakin ◽  
Julie Bennett ◽  
Tom Passey ◽  
Nicola Harrison ◽  
...  
Keyword(s):  
Plant Pathogens ◽  
Management Strategies ◽  
Sampling Strategy ◽  
Soil Samples ◽  
Apple Replant Disease ◽  
The United Kingdom ◽  
Replant Disease ◽  
Lower Abundance ◽  
Lesion Nematodes ◽  
Root Lesion Nematodes

Continuous planting of apple in the same area leads to reduced growth vigor and subsequent crop losses, i.e., apple replant disease (ARD) syndrome. Several soilborne plant pathogens including Pythium, Fusarium, and Cylindrocarpon spp. are often proposed as candidate causal organisms for ARD. In addition, the presence of root lesion nematodes and the lack of beneficial groups of bacteria are believed to exacerbate or ameliorate the effects of the plant pathogens. The importance of these proposed causal and auxiliary agents seems to vary with site. Using a spatially explicit sampling strategy to minimize spatial variability we collected rhizosphere soil samples from neighboring pairs of healthy and putative ARD trees to identify candidate causal organisms of ARD. Amplicon-based metabarcoding was used to obtain community-level profiles of the bacteria, fungi, oomycetes and nematodes in the soil samples. Total bacterial and fungal biomass in each sample was estimated using qPCR to adjust the raw sequence reads data. The results suggested that ARD is not ameliorated by enhanced rhizosphere biodiversity per se. We identified 25 bacterial operational taxonomic units (OTUs), 16 fungal OTUs, 18 oomycetes OTUs, and one nematode OTU group with differential abundance between healthy and putative ARD trees. All 25 bacterial OTUs had lower abundance in samples from ARD symptomatic trees than from healthy trees. One AMF OTU had lower abundance in samples from ARD symptomatic trees. None of 13 fungal OTUs that had higher abundance in samples from ARD symptomatic trees is a known plant pathogen; but at least one Pythium OTU (probably Pythium intermedium) is a candidate for causing ARD. The abundance of one nematode OTU was much higher in samples from ARD symptomatic trees than in healthy trees. The results suggest that, apart from the use of broad spectrum fumigants, the complexity of ARD may necessitate the combined use of multiple management strategies with the success of these measures expected to vary considerably between sites because of the varying importance of ARD causal agents among sites.

scholarly journals Screening Malus Germplasm for Field Resistance to Apple Replant Disease and Root-lesion Nematodes

HortScience ◽  
1996 ◽  
Vol 31 (4) ◽  
pp. 618f-618
Author(s):  
D.K. Isutsa ◽  
I.A. Merwin ◽  
B.B. Brodie
Keyword(s):  
Cover Crops ◽  
Dry Mass ◽  
Parasitic Nematodes ◽  
Screening Methods ◽  
Apple Replant Disease ◽  
Replant Disease ◽  
Lesion Nematodes ◽  
Root Necrosis ◽  
Root Lesion Nematodes ◽  
Plant Dry Mass

Apple replant disease (ARD) is a serious problem in fruit production, and none of the major clonal rootstocks are resistant to ARD. We have screened Malus domestica clones and species accessions from the USDA Malus Germplasm Repository at Geneva, N.Y., including M. angustifolia-2375.03 (MA), M. coronaria-2966.01 (MC), M. fusca-3031.01 (MF), M. ioensis-3059.01 (MI), M. sieversii-3530.01 (MS), and M. kirghisorum-3578.01 (MK), for resistance to ARD and root-lesion nematodes (RLN, Pratylenchus spp.), in a composite soil collected from 11 New York orchards with known ARD. Plant dry mass and height, root necrosis, and nematode populations in different apple species and clones were compared after 60 days growth in steam-pasteurized (PS), RLN-inoculated (IS), and naturally infested field (FS) soils with 1200 RLN per 100 cm3. More severe stunting, reduced plant dry mass, and root necrosis occurred in FS seedlings compared with those in PS, but M. angustifolia seedlings were substantially more resistant or tolerant to RLN and ARD than the other species tested. Plant dry mass ranked MK>MS>MA>MI>MF>MC, and these differences were significant at the 5% level. RLN root populations were negatively correlated with plant dry mass, and accounted for about 10% of its variation, with nematode populations in roots ranking MC>MF>MK>MI>MS>MA. Useful resistance to ARD and parasitic nematodes apparently exists within Malus germplasm collections, and can be identified by testing more genotypes, developing rapid resistance screening methods, and comparing RLN host preferences among Malus genotypes and various orchard cover crops.

scholarly journals Assessment of Agro-Ecological Apple Replant Disease (ARD) Management Strategies: Organic Fertilisation and Inoculation with Mycorrhizal Fungi and Bacteria

Agronomy ◽  
2021 ◽  
Vol 11 (2) ◽  
pp. 272
Author(s):  
Ulrike Cavael ◽  
Peter Lentzsch ◽  
Hilmar Schwärzel ◽  
Frank Eulenstein ◽  
Marion Tauschke ◽  
...  
Keyword(s):  
Mycorrhizal Fungi ◽  
Field Experiments ◽  
Management Strategies ◽  
Economic Effects ◽  
Biological Interactions ◽  
Apple Replant Disease ◽  
Plant Vigour ◽  
Current Form ◽  
Replant Disease ◽  
Organic Fertilisation

Apple replant disease (ARD) impacts the economic yield of orchards by physiological and morphological suppression of apple trees on replanted soils. The complexity of replant disease caused by a plethora of biological interactions and physical properties of the soil requires complex management strategies to mitigate these effects. Based on expert recommendations, we selected two management strategies linked to agroecological principles of (a) organic fertilisation with a specific mulch composition (MDK) and (b) biofertilisation with arbuscular mycorrhizal and bacterial strains (AMFbac), applied by a composition of existing products. For both management strategies we provide a proof-of-concept, by pot and field experiments. Both treatments have the potential to mitigate ARD effects on plant vigour. ARD effect was fully mitigated by MDK treatment in the short-term (one year) and was mitigated by up to 29% after seven years of MDK treatment (long-term). MDK provides an additional substrate for root growth. AMFbac has the potential to mitigate ARD effects on plant vigour but with non-replicable plant-beneficial effects in its current form of application. Thereby our results show a principal potential to mitigate economic effects but not to overcome replant disease inducing effects. While the MDK treatment is found resource intensive but reliable, the AMFbac treatment was found more user-friendly.

scholarly journals Comparative Field Efficacy of Management Strategies Containing Brassica napus Seed Meal or Green Manure for the Control of Apple Replant Disease

Plant Disease ◽  
2005 ◽  
Vol 89 (11) ◽  
pp. 1207-1213 ◽  
Author(s):  
Mark Mazzola ◽  
Kent Mullinix
Keyword(s):  
Brassica Napus ◽  
Tree Growth ◽  
Green Manure ◽  
Growth Response ◽  
Management Strategies ◽  
Soil Fumigation ◽  
Growth And Yield ◽  
Seed Meal ◽  
Apple Replant Disease ◽  
Replant Disease

Alternative management strategies to the use of preplant soil fumigation for the control of apple replant disease (ARD), including cover crops and strategies incorporating Brassica napus seed meal (rape seed meal [RSM]) amendment as the central component, were evaluated in the orchard. A 1-year wheat cover crop consisting of three short-term cropping periods with plant material removed at the end of each growth period and a 3-year B. napus green manure significantly enhanced vegetative growth and yield of Gala/M26. However, in each instance, the resulting disease control and growth response were inferior to that achieved through preplant methyl bromide soil fumigation. A 3-year bare fallow and 1- or 2-year B. napus green manure neither suppressed disease development nor enhanced tree growth. Preplant RSM amendment in conjunction with a postplant mefenoxam soil drench provided effective suppression of ARD, and the resulting tree growth and yield were comparable with that attained in response to 1,3- dichloropropene-chloropicrin fumigation in one orchard. At a second orchard, the growth response attained with the alternative treatment was inferior to preplant soil fumigation, which was associated with an apparent re-infestation of RSM-treated soils and tree roots by Pratylenchus spp. Application of RSM after wheat cropping or in conjunction with soil solarization provided an intermediate level of disease control and a corresponding reduction in growth and yield of apple relative to preplant fumigation at both sites.

Root-lesion nematodes in cereal fields: importance, distribution, identification, and management strategies

2018 ◽  
Vol 126 (1) ◽  
pp. 1-11 ◽  
Author(s):  
Fouad Mokrini ◽  
Nicole Viaene ◽  
Lieven Waeyenberge ◽  
Abdelfattah A. Dababat ◽  
Maurice Moens
Keyword(s):  
Management Strategies ◽  
Lesion Nematodes ◽  
Cereal Fields ◽  
Root Lesion Nematodes

Estimating Population Densities of Root Lesion Nematodes, Pratylenchus spp., from Soil Samples Using Dual Active and Passive Assays

2012 ◽  
Vol 13 (1) ◽  
pp. 4 ◽  
Author(s):  
Ann E. MacGuidwin ◽  
Breann E. Bender
Keyword(s):  
Population Density ◽  
Soil Samples ◽  
Scaling Factor ◽  
The Other ◽  
Testing Methods ◽  
Population Densities ◽  
Lesion Nematodes ◽  
The Mean ◽  
Time Of Year ◽  
Root Lesion Nematodes

Root lesion nematodes are versatile parasites that move freely between root and soil habitats. Most laboratories conduct separate assays for soil or root tissue, using time-of-year as the selecting factor. We used a dual assay that simultaneously extracts nematodes from soil and root fragments in soil samples to identify the value of soil versus root tests using 920 research samples collected 1 April to 15 May, and 853 clinic samples collected year round. Nematodes were recovered from both soil and root fragments regardless of the time of year or origin of the sample. When the data were summarized by cohort, the mean percentage of nematodes recovered from root fragments was 65% for the research samples, 59% for clinic samples submitted 1 March to 15 June, 56% for clinic samples submitted 16 June to 31 July, and 49% for clinic samples submitted after 1 August. Both the incidence and population density of root lesion nematodes was underestimated if only the soil or only the root fraction was considered, indicating the need for testing methods that consider both habitats. The variability among samples for the distribution of nematodes between root and soil habitats was high, negating the option of running one assay and using a constant scaling factor to account for the other. Accepted for publication 30 October 2012. Published 20 November 2012.

Growth of `Bartlett' Pear Seedlings in Response to Number of Root-lesion Nematodes and Temperature

HortScience ◽  
1990 ◽  
Vol 25 (3) ◽  
pp. 318-320
Author(s):  
J.L. Townshend
Keyword(s):  
Root Growth ◽  
Pyrus Communis ◽  
Leaf Number ◽  
Pratylenchus Penetrans ◽  
Leaf Production ◽  
Lesion Nematodes ◽  
Effects Of Temperature ◽  
Root Lesion Nematodes

The effects of temperature and root-lesion nematodes [Pratylenchus penetrans (Cobb)] on the growth of newly germinated `Bartlett' pear seedlings (Pyrus communis L.) were examined. At five temperatures from 10 to 30C, P. penetrans (five per gram of soil) did not purple the leaves. After 8 weeks, leaf number, trunk height, and top and root weights were reduced only at 25C. The number of P. penetrans in the roots were greatest at 15 and 20C. At 20C, P. penetrans (16 per gram of soil) caused the leaves of seedlings to turn purple, and, by 6 weeks after treatment, the nematodes had reduced leaf production, trunk elongation, and top and root growth.

scholarly journals Chemical Properties of Heavy Metal-Contaminated Soils from a Korean Military Shooting Range: Evaluation of Pb Sources Using Pb Isotope Ratios

2021 ◽  
Vol 11 (15) ◽  
pp. 7099
Author(s):  
Inkyeong Moon ◽  
Honghyun Kim ◽  
Sangjo Jeong ◽  
Hyungjin Choi ◽  
Jungtae Park ◽  
...  
Keyword(s):  
Heavy Metals ◽  
Heavy Metal ◽  
Contaminated Soils ◽  
Management Strategies ◽  
Chemical Properties ◽  
Heavy Metal Concentration ◽  
Soil Samples ◽  
Shooting Range ◽  
Geochemical Properties ◽  
Mineral Phases

In this study, the geochemical properties of heavy metal-contaminated soils from a Korean military shooting range were analyzed. The chemical behavior of heavy metals was determined by analyzing the soil pH, heavy metal concentration, mineral composition, and Pb isotopes. In total, 24 soil samples were collected from a Korean military shooting range. The soil samples consist of quartz, albite, microcline, muscovite/illite, kaolinite, chlorite, and calcite. Lead minerals, such as hydrocerussite and anglesite, which are indicative of a transformation into secondary mineral phases, were not observed. All soils were strongly contaminated with Pb with minor concentrations of Cu, Ni, Cd, and Zn. Arsenic was rarely detected. The obtained results are indicated that the soils from the shooting range are contaminated with heavy metals and have evidences of different degree of anthropogenic Pb sources. This study is crucial for the evaluation of heavy metal-contaminated soils in shooting ranges and their environmental effect as well as for the establishment of management strategies for the mitigation of environmental risks.

Root exposure to apple replant disease soil triggers local defense response and rhizoplane microbiome dysbiosis

2021 ◽  
Author(s):  
Alicia Balbín-Suárez ◽  
Samuel Jacquiod ◽  
Annmarie-Deetja Rohr ◽  
Benye Liu ◽  
Henryk Flachowsky ◽  
...  
Keyword(s):  
Gene Expression ◽  
Plant Defense ◽  
Defense Response ◽  
Soil Column ◽  
Soil Layer ◽  
Soil Microbiome ◽  
Control Soil ◽  
Apple Rootstocks ◽  
Apple Replant Disease ◽  
Replant Disease

Abstract A soil column split-root experiment was designed to investigate the ability of apple replant disease (ARD) causing agents to spread in soil. ‘M26’ apple rootstocks grew into a top layer of Control soil, followed by a barrier-free split-soil layer (Control soil/ARD soil). We observed a severely reduced root growth, concomitant with enhanced gene expression of phytoalexin biosynthetic genes and phytoalexin content in roots from ARD soil, indicating a pronounced local plant defense response. Amplicon sequencing (bacteria, archaea, fungi) revealed local shifts in diversity and composition of microorganisms in the rhizoplane of roots from ARD soil. An enrichment of OTUs affiliated to potential ARD fungal pathogens (Ilyonectria and Nectria sp.) and bacteria frequently associated with ARD (Streptomyces, Variovorax) was noted. In conclusion, our integrated study supports the idea of ARD being local and not spreading into surrounding soil, as only the roots in ARD soil were affected in terms of growth, phytoalexin biosynthetic gene expression, phytoalexin production, and altered microbiome structure. This study further reinforces the microbiological nature of ARD, being likely triggered by a disturbed soil microbiome enriched with low mobility ARD-causing agents that induce a strong plant defense and rhizoplane microbiome dysbiosis, concurring with root damage.

scholarly journals High-Quality Genome Resource of the Pathogen of Diaporthe (Phomopsis) phragmitis Causing Kiwifruit Soft Rot

2020 ◽  
Author(s):  
Pu Liu ◽  
Wang Xiaojie ◽  
Dong Hongjie ◽  
Jianbin Lan ◽  
Kuan Liang ◽  
...  
Keyword(s):  
Plant Pathogens ◽  
Management Strategies ◽  
Soft Rot ◽  
Fruit Rot ◽  
Economic Plant ◽  
High Quality ◽  
Total Size ◽  
Genome Wide ◽  
Solid Foundation ◽  
High Quality Genome

Diaporthe spp. are critical plant pathogens that cause wood cankers, wilt, dieback, and fruit rot in a wide variety of economic plant hosts and are regarded as one of the most acute threats faced by kiwifruit industry worldwide. Diaporthe phragmitis strain NJD1 is a highly pathogenic isolate of soft rot of kiwifruit. Here, we present a high-quality genome-wide sequence of D. phragmitis NJD1 that was assembled into 28 contigs containing a total size of 58.33 Mb and N50 length of 3.55 Mb. These results lay a solid foundation for understanding host–pathogen interaction and improving disease management strategies.

Sign in / Sign up

Export Citation Format

Share Document