scholarly journals Genome Resource: Draft genome of Fusarium avenaceum, strain F156N33, isolated from the atmosphere above Virginia and annotated based on RNA sequencing data

Plant Disease ◽  
2021 ◽  
Author(s):  
Shu Yang ◽  
Jeffrey Coleman ◽  
Boris Vinatzer

Fusarium avenaceum is a filamentous fungus commonly associated with plants and soil. It is a causal agent of Fusarium head blight (FHB) on maize and small-grain cereals, blights on other plant species, and is one of the very few fungal species known to have ice nucleation activity, i.e., it catalyzes ice formation. Here we report the draft genome of the ice nucleation-active F. avenaceum strain F156N33 isolated from the atmosphere above Virginia. The genome assembly is 41,175,306 bp long, consists of 214 contigs, and is predicted to encode 11,233 proteins, which were annotated using RNA-seq data obtained from the same strain.

2019 ◽  
Author(s):  
Nsikanabasi Silas Umo ◽  
Robert Wagner ◽  
Romy Ullrich ◽  
Alexei Kiselev ◽  
Harald Saathoff ◽  
...  

Abstract. Ice-nucleating particles (INPs), which are precursors for ice formation in clouds, can alter the microphysical and optical properties of clouds, hence, impacting the cloud lifetimes and hydrological cycles. However, the mechanisms with which these INPs nucleate ice when exposed to different atmospheric conditions are still unclear for some particles. Recently, some INPs with pores or permanent surface defects of regular or irregular geometries have been reported to initiate ice formation at cirrus temperatures via the liquid phase in a two-step process, involving the condensation and freezing of supercooled water inside these pores. This mechanism has therefore been labelled as pore condensation and freezing (PCF). The PCF mechanism allows formation and stabilization of ice germs in the particle without the formation of macroscopic ice. Coal fly ash (CFA) aerosol particles are known to nucleate ice in the immersion freezing mode and may play a significant role in cloud formation. In our current ice nucleation experiments with CFA particles, which we conducted in the Aerosol Interaction and Dynamics in the Atmosphere (AIDA) aerosol and cloud simulation chamber at the Karlsruhe Institute of Technology, Germany, we partly observed a strong increase in the ice-active fraction for experiments performed at temperatures just below the homogeneous freezing of pure water, which could be related to the PCF mechanism. To further investigate the potential of CFA particles undergoing PCF mechanism, we performed a series of temperature-cycling experiments in AIDA. The temperature-cycling experiments involve exposing CFA particles to lower temperatures (down to ~ 228 K), then warming them up to higher temperatures (238 K–273 K) before investigating their ice nucleation properties. For the first time, we report the enhancement of the ice nucleation activity of the CFA particles for temperatures up to 263 K, from which we conclude that it is most likely due to the PCF mechanism. This indicates that ice germs formed in the CFA particles’ pores during cooling remains in the pores during the warming and induces ice crystallization as soon as the pre-activated particles experience ice-supersaturated conditions at warmer temperatures; hence, showing an enhancement in their ice-nucleating ability compared to the scenario where the CFA particles are directly probed at warmer temperatures without temporary cooling. The enhancement in the ice nucleation ability showed a positive correlation with the specific surface area and porosity of the particles. On the one hand, the PCF mechanism could be the prevalent nucleation mode for intrinsic ice formation at cirrus temperatures rather than the previously acclaimed deposition mode. On the other, the PCF mechanism can also play a significant role in mixed-phase cloud formation in a case where the CFA particles are injected from higher altitudes and then transported to lower altitudes after being exposed to lower temperatures.


Author(s):  
Masaya Ishikawa ◽  
Hiroyuki Ide ◽  
Tetsuya Tsujii ◽  
Timothy Stait-Gardner ◽  
Hikaru Kubo ◽  
...  

To explore diversity in cold hardiness mechanisms, high resolution magnetic resonance imaging (MRI) was used to visualize freezing behaviors in wintering flower buds of Daphne kamtschatica var. jezoensis, which have no bud scales surrounding well-developed florets. MRI images showed that anthers remained stably supercooled to -14 ∼ -21°C or lower whilst most other tissues froze by -7°C. Freezing of some anthers detected in MRI images at ∼ -21°C corresponded with numerous low temperature exotherms and also with the “all-or-nothing” type of anther injuries. In ovules/pistils, only embryo sacs remained supercooled at -7°C or lower, but slowly dehydrated during further cooling. Cryomicroscopic observation revealed ice formation in the cavities of calyx tubes and pistils but detected no ice in embryo sacs or in anthers. The distribution of ice nucleation activity in floral tissues corroborated the tissue freezing behaviors. Filaments likely work as the ice blocking barrier that prevents ice intrusion from extracellularly frozen calyx tubes to connecting unfrozen anthers. Unique freezing behaviors were demonstrated in Daphne flower buds: preferential freezing avoidance in male and female gametophytes and their surrounding tissues (by stable supercooling in anthers and by supercooling with slow dehydration in embryo sacs) whilst the remaining tissues tolerate extracellular freezing.


2014 ◽  
Vol 22 (03) ◽  
pp. 1450012 ◽  
Author(s):  
JIN HU ◽  
OSMANN SARI ◽  
CYRIL MAHMED

Ice storage is one technique for effective use of thermal energy. Application of bionucleant (a protein from the bacterium Pseudomonas syringae) as a snow inducer in ski field has shown great potential to enhance the quantity of snow and increase freezing temperature. In this study, differential scanning calorimeter (DSC) and lab-built ice formation reactor were employed to study experimentally the heterogeneous ice nucleation under super-cooled conditions at different dissolved bionucleant concentrations. It was found the degree of supercooling is reduced by addition of bionucleant. However, ice nucleation-activity of bionucleant will drop down when bionucleant solution is saturated/supersaturated. In our DSC measured heat release study, when bionucleant acts as ice nucleation agent in aqueous solution, prior to reaching its saturation/supersaturation, there is an increase in latent heat release during freezing/melting as the amount of dissolved bionucleant increases. In another test, the supercooling does not occur in 0.5% bionucleant solution, it began to freeze around 0°C. Our results suggest that, the addition of bionucleant may help induce ice nucleation and increase freezing temperature thereby reduces the energy consumption of ice formation for cold storage.


2000 ◽  
Vol 90 (4) ◽  
pp. 354-361 ◽  
Author(s):  
Christopher S. Snider ◽  
Tom Hsiang ◽  
Guiying Zhao ◽  
Marilyn Griffith

We examined the ability of snow molds to grow at temperatures from -5 to 30°C and to influence the growth of ice through assays for ice nucleation and antifreeze activities. Isolates of Coprinus psychromorbidus (low temperature basidiomycete variant), Microdochium nivale, Typhula phacorrhiza, T. ishikariensis, T. incarnata, and T. canadensis all grew at -5°C, whereas Sclerotinia borealis and S. homoeocarpa did not grow at temperatures below 4°C. The highest threshold ice nucleation temperature was -7°C. Because snow molds are most damaging to their hosts at temperatures above this, our results imply that the pathogenesis of these fungi is not dependent on ice nucleation activity to cause freeze-wounding of host plants. All snow molds that grew at subzero temperatures also exhibited antifreeze activity in the growth medium and in the soluble and insoluble hyphal fractions, with the exception of M. nivale and one isolate of T. canadensis. The lack of high ice nucleation activity combined with the presence of antifreeze activity in all fungal fractions indicates that snow molds can moderate their environment to inhibit or modify intra- and extracellular ice formation, which helps explain their ability to grow at subzero temperatures under snow cover.


2019 ◽  
Vol 19 (13) ◽  
pp. 8783-8800 ◽  
Author(s):  
Nsikanabasi Silas Umo ◽  
Robert Wagner ◽  
Romy Ullrich ◽  
Alexei Kiselev ◽  
Harald Saathoff ◽  
...  

Abstract. Ice-nucleating particles (INPs), which are precursors for ice formation in clouds, can alter the microphysical and optical properties of clouds, thereby impacting the cloud lifetimes and hydrological cycles. However, the mechanisms with which these INPs nucleate ice when exposed to different atmospheric conditions are still unclear for some particles. Recently, some INPs with pores or permanent surface defects of regular or irregular geometries have been reported to initiate ice formation at cirrus temperatures via the liquid phase in a two-step process, involving the condensation and freezing of supercooled water inside these pores. This mechanism has therefore been labelled pore condensation and freezing (PCF). The PCF mechanism allows formation and stabilization of ice germs in the particle without the formation of macroscopic ice. Coal fly ash (CFA) aerosol particles are known to nucleate ice in the immersion freezing mode and may play a significant role in cloud formation. In our current ice nucleation experiments with a particular CFA sample (CFA_UK), which we conducted in the Aerosol Interaction and Dynamics in the Atmosphere (AIDA) aerosol and cloud simulation chamber at the Karlsruhe Institute of Technology (KIT), Germany, we observed a strong increase (at a threshold relative humidity with respect to ice of 101 %–105 %) in the ice-active fraction for experiments performed at temperatures just below the homogeneous freezing of pure water. This observed strong increase in the ice-active fraction could be related to the PCF mechanism. To further investigate the potential of CFA particles undergoing the PCF mechanism, we performed a series of temperature-cycling experiments in AIDA. The temperature-cycling experiments involve exposing CFA particles to lower temperatures (down to ∼228 K), then warming them up to higher temperatures (238–273 K) before investigating their ice nucleation properties. For the first time, we report the enhancement of the ice nucleation activity of the CFA particles for temperatures up to 263 K, from which we conclude that it is most likely due to the PCF mechanism. This indicates that ice germs formed in the CFA particles' pores during cooling remain in the pores during warming and induce ice crystallization as soon as the pre-activated particles experience ice-supersaturated conditions at higher temperatures; hence, these pre-activated particles show an enhancement in their ice-nucleating ability compared with the scenario where the CFA particles are directly probed at higher temperatures without temporary cooling. The enhancement in the ice nucleation ability showed a positive correlation with the specific surface area and porosity of the particles. On the one hand, the PCF mechanism can play a significant role in mixed-phase cloud formation in a case where the CFA particles are injected from higher altitudes and then transported to lower altitudes after being exposed to lower temperatures. On the other hand, the PCF mechanism could be the prevalent nucleation mode for ice formation at cirrus temperatures rather than the previously acclaimed deposition mode.


1992 ◽  
Vol 58 (9) ◽  
pp. 2960-2964 ◽  
Author(s):  
Stéphan Pouleur ◽  
Claude Richard ◽  
Jean-Guy Martin ◽  
Hani Antoun

2021 ◽  
Vol 10 (47) ◽  
Author(s):  
Shu Yang ◽  
Boris A. Vinatzer

Mortierella alpina is a filamentous fungus commonly associated with soil and is one of very few fungal species known to include strains with ice nucleation activity. Here, we report the draft genome sequence of the ice nucleation-active M. alpina strain LL118, isolated from aspen leaf litter collected in Alberta, Canada.


Author(s):  
Philipp Baloh ◽  
Regina Hanlon ◽  
Christopher Anderson ◽  
Eoin Dolan ◽  
Gernot Pacholik ◽  
...  

2021 ◽  
Vol 23 (5) ◽  
pp. 3565-3573
Author(s):  
Esther Chong ◽  
Katherine E. Marak ◽  
Yang Li ◽  
Miriam Arak Freedman

FeO has enhanced ice nucleation activity due to functional groups that are exposed upon mechanical processing.


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