scholarly journals Re-evaluation of Phytophthora Species Isolated During 30 Years of Vegetation Health Surveys in Western Australia Using Molecular Techniques

Plant Disease ◽  
2009 ◽  
Vol 93 (3) ◽  
pp. 215-223 ◽  
Author(s):  
Treena I. Burgess ◽  
Janet L. Webster ◽  
Juanita A. Ciampini ◽  
Diane White ◽  
Giles E. StJ. Hardy ◽  
...  
Keyword(s):  
New Taxa ◽  
Western Australia ◽  
Dna Sequences ◽  
Phytophthora Cinnamomi ◽  
Sequence Data ◽  
Phytophthora Species ◽  
Molecular Techniques ◽  
Similar Species ◽  
Eucalyptus Marginata ◽  
Similar Morphology

For 30 years, large-scale aerial photography has been used to map the extent of Phytophthora dieback disease in native forests in the southwest of Western Australia, with validation of the observations involving routine testing of soil and root samples for the presence of Phytophthora cinnamomi. In addition to P. cinnamomi, six morpho-species have been identified using this technique: P. citricola, P. megasperma, P. cryptogea, P. drechsleri, P. nicotianae, and P. boehmeriae. In recent years, many new Phytophthora species have been described worldwide, often with similar morphology to existing species; thus, as many of the isolates collected in Western Australia have been difficult to identify based on morphology, molecular identification of the morpho-species is required. Based on amplification of the internal transcribed spacer (ITS) region of the rDNA gene, sequence data of more than 230 isolates were compared with those of existing species and undescribed taxa. P. inundata, P. asparagi, P. taxon PgChlamydo, P. taxon personii, and P. taxon niederhauserii were identified based on sequence data. Phylogenetic analysis revealed that nine potentially new and undescribed taxa can be distinguished. Several of the new taxa are morphologically indistinguishable from species such as P. citricola, P. drechsleri, and P. megasperma. In some cases, the new taxa are closely related to species with similar morphology (e.g., P.sp.4 and P. citricola). However, the DNA sequences of other new taxa such as P.sp.3 and P.sp.9 show that they are not closely related to morphologically similar species P. drechsleri and P. megasperma, respectively. Most of the new taxa have been associated with dying Banksia spp., while P.sp.2 and P.sp.4 have also been isolated from dying Eucalyptus marginata (jarrah). Some taxa (P.sp.3, 6, and 7) appear to have limited distribution, while others like P.sp.4 are widespread.

Distribution of Phytophthora cinnamomi in the northern jarrah (Eucalyptus marginata) forest of Western Australia in relation to dieback age and topography

2002 ◽  
Vol 50 (1) ◽  
pp. 107 ◽  
Author(s):  
K. L. McDougall ◽  
G. E. St J. Hardy ◽  
R. J. Hobbs
Keyword(s):  
Spatial Distribution ◽  
Western Australia ◽  
Aerial Photography ◽  
Phytophthora Cinnamomi ◽  
Ex Situ ◽  
Patchy Distribution ◽  
Jarrah Forest ◽  
Eucalyptus Marginata ◽  
Almost All

The spatial distribution of Phytophthora cinnamomi Rands at seven dieback sites in the jarrah (Eucalyptus marginata Donn. ex Smith) forest of Western Australia was determined by the following two baiting techniques: in situ baiting with live Banksia grandis Willd. seedlings and ex situ baiting of sampled soil and root material. Four areas within each site were sampled, reflecting dieback age and position in the landscape. Approximate dieback ages of 50, 20 and 5 years were determined by aerial photography. The 50-year-old age class was divided into wet valley floor and dry gravelly slope. Phytophthora cinnamomi was recovered most frequently from the 5-year-old (dieback fronts) and wet 50-year-old areas by both baiting techniques. It was recovered from more than twice as many areas and about five times as many samples when in situ B. grandis baits were used compared with ex situ soil and root baiting. Almost all recoveries from in situ baits were made between October and December. From both methods, it appears that P. cinnamomi has a patchy distribution within dieback sites in the northern jarrah forest. It is easily detected only on dieback fronts and wet valley floors. On dry gravelly sites affected 20 years or more ago, P. cinnamomi is rare and may even be absent at some sites. This makes confident detection of the pathogen difficult. In situ baiting at least allows a temporal component to the sampling and will be a useful method of detection in areas where P. cinnamomi is rare or transient.

Quantification of the susceptibility of the native flora of the South-West Botanical Province, Western Australia, to Phytophthora cinnamomi

2004 ◽  
Vol 52 (4) ◽  
pp. 435 ◽  
Author(s):  
B. L. Shearer ◽  
C. E. Crane ◽  
A. Cochrane
Keyword(s):  
Western Australia ◽  
National Park ◽  
Phytophthora Cinnamomi ◽  
Natural Environments ◽  
The South ◽  
Irreversible Damage ◽  
Eucalyptus Marginata ◽  
Native Flora ◽  
South West ◽  
Wide Range

This study compares, for the first time, variation in estimates of susceptibility of native flora to Phytophthora cinnamomi Rands among four databases and proposes an estimate of the proportion of the flora of the South-West Botanical Province of Western Australia that is susceptible to the pathogen. Estimates of the susceptibility of south-western native flora to P. cinnamomi infection were obtained from databases for Banksia woodland of the Swan Coastal Plain, jarrah (Eucalyptus marginata Donn. ex Smith) forest, the Stirling Range National Park and Rare and Threatened Flora of Western Australia. For the woodland, forest and national park databases, hosts were naturally infected in uncontrolled diverse natural environments. In contrast, threatened flora were artificially inoculated in a shadehouse environment. Considerable variation occurred within taxonomic units, making occurrence within family and genus poor predictors of species susceptibility. Identification of intra-specific resistance suggests that P. cinnamomi could be having a strong selection pressure on some threatened flora at infested sites and the populations could shift to more resistant types. Similar estimates of the proportion of species susceptible to P. cinnamomi among the databases from the wide range of environments suggests that a realistic estimate of species susceptibility to P. cinnamomi infection in the south-western region has been obtained. The mean of 40% susceptible and 14% highly susceptible equates to 2284 and 800 species of the 5710 described plant species in the South-West Botanical Province susceptible and highly susceptible to P. cinnamomi, respectively. Such estimates are important for determining the cost of disease to conservation values and for prioritising disease importance and research priorities. P. cinnamomi in south-western Australia is an unparalleled example of an introduced pathogen with a wide host range causing immense irreversible damage to unique, diverse but mainly susceptible plant communities.

scholarly journals Two new asexual genera and six new asexual species in the family Microthyriaceae (Dothideomycetes, Ascomycota) from China

MycoKeys ◽  
2021 ◽  
Vol 85 ◽  
pp. 1-30
Author(s):  
Min Qiao ◽  
Hua Zheng ◽  
Ji-Shu Guo ◽  
Rafael F. Castañeda-Ruiz ◽  
Jian-Ping Xu ◽  
...  
Keyword(s):  
New Taxa ◽  
Dna Sequences ◽  
Sequence Data ◽  
Southern China ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Aquatic Hyphomycetes ◽  
Internal Transcribed Spacers ◽  
The Family

The family Microthyriaceae is represented by relatively few mycelial cultures and DNA sequences; as a result, the taxonomy and classification of this group of organisms remain poorly understood. During the investigation of the diversity of aquatic hyphomycetes from southern China, several isolates were collected. These isolates were cultured and sequenced and a BLAST search of its LSU sequences against data in GenBank revealed that the closest related taxa are in the genus Microthyrium. Phylogenetic analyses, based on the combined sequence data from the internal transcribed spacers (ITS) and the large subunit (LSU), revealed that these isolates represent eight new taxa in Microthyriaceae, including two new genera, Antidactylariagen. nov. and Isthmomycesgen. nov. and six new species, Antidactylaria minifimbriatasp. nov., Isthmomyces oxysporussp. nov., I. dissimilissp. nov., I. macrosporussp. nov., Triscelophorus anisopterioideussp. nov. and T. sinensissp. nov. These new taxa are described, illustrated for their morphologies and compared with similar taxa. In addition, two new combinations are proposed in this family.

Comparative Behaviour of Phytophthora Species in the Secondary Phloem of Stems and Excised Roots of Banksia grandis and Eucalyptus marginata

1987 ◽  
Vol 35 (1) ◽  
pp. 103 ◽  
Author(s):  
BL Shearer ◽  
BJ Michaelsen ◽  
HJ Warren
Keyword(s):  
Response Curve ◽  
Growth Response ◽  
Phytophthora Cinnamomi ◽  
Similar Rate ◽  
Phytophthora Species ◽  
Phytophthora Cactorum ◽  
Secondary Phloem ◽  
Eucalyptus Marginata ◽  
Temperature Growth ◽  
Rates Of Growth

We inoculated excised roots under controlled laboratory conditions and inoculated stems in the field to compare the behaviour of Phytophthora cactorum, P. cambivora, P. cinnamomi A2, P. citricola, P. cryptogea A1 and A2, P. megasperma var. sojae and P. nicotianae var. parasitica in the secondary phloem of Banksia grandis and Eucalyptus marginata. Most of the Phytophthora species grew in excised roots of E. marginata at a similar rate. Of the Phytophthora species with similar rates of growth in E. marginata roots, P. cinnamomi was the only species that consistently grew faster in excised roots of B. grandis than in roots of E. marginata. The growth of the Phytophthora species in excised roots under controlled conditions was significantly correlated with growth in intact stems in the field. Over a range of temperatures between 10 and 25°C, the slope of the temperature-growth response curve for P. cinnamomi in excised roots of B. grandis was greater than that for P. citricola. At temperatures between 27 and 31°C, growth rates of P. cinnarnomi in excised roots of B. grandis were 1 cm or more per day compared with 0.3 cm per day for P. citricola. Differences in growth rate in the roots of the widespread understorey species B. grandis can be important to the epidemiology of a Phytophthora species in the E. marginata forest. Phytophthora cinnamomi with fast rates of growth in roots of B. grandis is more likely to have inoculum in the vicinity of major roots of E. marginata than are Phytophthora species with slow rates of growth.

Additions to the host range of Phytophthora cinnamomi in the jarrah (Eucalyptus marginata) forest of Western Australia

2001 ◽  
Vol 49 (2) ◽  
pp. 193 ◽  
Author(s):  
K. L. McDougall ◽  
G. E. St J. Hardy ◽  
R. J. Hobbs
Keyword(s):  
Host Range ◽  
Western Australia ◽  
Phytophthora Cinnamomi ◽  
Separate Study ◽  
Perennial Species ◽  
Wild Populations ◽  
Field Sampling ◽  
Eucalyptus Marginata ◽  
Pathogenicity Tests ◽  
Interpretation Of Results

Pathogenicity tests with Phytophthora cinnamomi were conducted on 25 perennial species from the jarrah (Eucalyptus marginata) forest of Western Australia. Most species tested had been found in a separate study to be scarce on sites affected by Phytophthora cinnamomi but frequently found in unaffected vegetation. Some species that were known to be field-tolerant of P. cinnamomi and some that were highly susceptible to infection were included in the study for comparison. Phytophthora cinnamomi was recorded from 13 of 17 species not previously known to be susceptible. Phytophthora cinnamomi was subsequently isolated from dead plants of two of these 13 species in the field. The interpretation of results from the glasshouse trials was difficult for some species because of inconsistent patterns of death and P. cinnamomi isolation in the glasshouse trials. Phytophthora cinnamomi probably causes decline in wild populations of Stylidium amoenum, based on the ease of field and glasshouse isolation of P. cinnamomi and the scarcity of this forb on dieback sites. It may also contribute to decline in populations of Boronia fastigiata, Hybanthus floribundus, Labichea punctata, Scaevola calliptera and Stylidium junceum, although further field sampling is required to confirm this.

The long-term ability of phosphite to control Phytophthora cinnamomi in two native plant communities of Western Australia

2001 ◽  
Vol 49 (6) ◽  
pp. 761 ◽  
Author(s):  
K. M. Tynan ◽  
C. J. Wilkinson ◽  
J. M. Holmes ◽  
B. Dell ◽  
I. J. Colquhoun ◽  
...  
Keyword(s):  
Plant Species ◽  
Plant Communities ◽  
Western Australia ◽  
Foliar Application ◽  
Phytophthora Cinnamomi ◽  
Native Plant ◽  
In Planta ◽  
Eucalyptus Marginata ◽  
Application Rates ◽  
The Impact

This study examined the ability of foliar applications of the fungicide phosphite to contain colonisation of Phytophthora cinnamomi in a range of plant species growing in natural plant communities in the northern sandplain and jarrah (Eucalyptus marginata) forest of south-western Australia. Wound inoculation of plant stems with P. cinnamomi was used to determine the efficacy of phosphite over time after application. Colonisation by P. cinnamomi was reduced for 5–24 months after phosphite was applied, depending on the concentration of phosphite used, plant species treated and the time of phosphite application. Plant species within and between plant communities varied considerably in their ability to take up and retain phosphite in inoculated stems and in the in planta concentrations of phosphite required to contain P. cinnamomi. As spray application rates of phosphite increased from 5 to 20 g L–1, stem tissue concentrations increased, as did the ability of a plant species to contain P. cinnamomi. However, at application rates of phosphite above 5 g L–1 phytotoxicity symptoms were obvious in most species, with some plants being killed. So, despite 10 and 20 g L–1 of phosphite being more effective and persistent in controlling P. cinnamomi, these rates are not recommended for application to the plant species studied. The results of this study indicate that foliar application of phosphite has considerable potential in reducing the impact of P. cinnamomi in native plant communities in the short-term. However, in order to maintain adequate control, phosphite should be sprayed every 6–12 months, depending on the species and/or plant community.

scholarly journals A Novel LAMP Assay for the Detection of Phytophthora cinnamomi Utilizing a New Target Gene Identified From Genome Sequences

Plant Disease ◽  
2019 ◽  
Vol 103 (12) ◽  
pp. 3101-3107 ◽  
Author(s):  
Tingting Dai ◽  
Xiao Yang ◽  
Tao Hu ◽  
Zhongyan Li ◽  
Yue Xu ◽  
...  
Keyword(s):  
Target Gene ◽  
Genomic Sequence ◽  
Phytophthora Cinnamomi ◽  
Sequence Data ◽  
Lamp Assay ◽  
Phytophthora Species ◽  
Conventional Pcr ◽  
Pcr Assay ◽  
Cedrus Deodara ◽  
Detection Rates

Phytophthora cinnamomi is an ecologically and agriculturally significant plant pathogen. Early and accurate detection of P. cinnamomi is paramount to disease prevention and management. In this study, a loop-mediated isothermal amplification (LAMP) assay utilizing a new target gene Pcinn100006 identified from genomic sequence data was developed and evaluated for the detection of P. cinnamomi. This Pcinn100006 LAMP assay was found highly specific to P. cinnamomi. All 10 tested isolates of P. cinnamomi yielded positive results, whereas 50 isolates belonging to 16 other Phytophthora species, Globisporangium ultimum, and 14 fungal species lacked detection. This assay was 10 times more sensitive (100 pg in a 25-µl reaction mixture) than a conventional PCR assay (2 ng in a 50-µl reaction mixture) for detecting the genomic DNA of P. cinnamomi. In addition, it detected P. cinnamomi from artificially inoculated leaves of Cedrus deodara. Moreover, detection rates of P. cinnamomi using environmental DNAs extracted from 13 naturally infested rhizosphere samples were 100% in the Pcinn100006 LAMP assay versus 46% in the conventional PCR assay. Considering its higher accuracy and shorter time span, this Pcinn100006 LAMP assay is a promising diagnostic tool to replace conventional PCR-based and culture-dependent assays for screening of P. cinnamomi in regions at risk of infection or contamination.

Vegetation of Phytophthora cinnamomi-infested and adjoining uninfested sites in the northern jarrah (Eucalyptus marginata) forest of Western Australia

2002 ◽  
Vol 50 (3) ◽  
pp. 277 ◽  
Author(s):  
K. L. McDougall ◽  
R. J. Hobbs ◽  
G. E. St Hardy
Keyword(s):  
Western Australia ◽  
Phytophthora Cinnamomi ◽  
Annual Plants ◽  
Jarrah Forest ◽  
Eucalyptus Marginata ◽  
Number Of Species ◽  
Trees And Shrubs ◽  
Lower Cover

The vegetation of seven sites in the northern jarrah forest of Western Australia infested with Phytophthora cinnamomi was recorded and compared with adjoining vegetation. The number of species per quadrat was found to be the same in vegetation affected by P. cinnamomi as in healthy vegetation, although there were more species overall in affected vegetation. Vegetation of uninfested sites had a higher cover and more species per quadrat of trees and shrubs and lower cover and fewer species per quadrat of annual plants than vegetation of infested sites. Although many species that are known to be highly susceptible to infection by P. cinnamomi were rare at infested sites, only two (Banksia grandis and Tetratheca hirsuta) were absent from all of the 50-year-old infested parts of sites. Several species that are known to be highly susceptible to infection by P. cinnamomi were as common at infested as at healthy sites. The presence of such species at infested sites and the capacity of P. cinnamomi to infect species it does not kill suggest that this pathogen will persist and continue to influence future vegetation in the jarrah forest.

Mating Behaviour of Australian Isolates of Phytophthora Species. II. Phytophthora cinnamomi

1978 ◽  
Vol 26 (2) ◽  
pp. 139 ◽  
Author(s):  
CJ Shepherd ◽  
RB Cunningham
Keyword(s):  
Statistical Analysis ◽  
Western Australia ◽  
Culture Medium ◽  
Phytophthora Cinnamomi ◽  
Mating Behaviour ◽  
Phytophthora Species ◽  
Taxonomic Significance ◽  
South Eastern

Determinations were made of the patterns of oogonial occurrence in the culture medium, the numbers of oogonia produced and of aborted oogonia formed in matings between 18 A1 and 116 A2 compatability type isolates of Phytophthora cinnamomi from south-eastern and Western Australia. The majority of the A2 isolates mated freely with their A1 counterparts, but three A2 isolates mated with only some of the A1 testers and five others were sterile. Patterns of occurrence of oogonia, their quantitative production and the percentage of aborted oogonia produced were affected by the particular isolates used. Statistical analysis of the data showed that the nine populations of A2 isolates were significantly different from each other in all three parameters studied. Populations from Eden and Bemm River were markedly less fertile than those from other regions. These findings are consistent with the hypothesis that P. cinnamomi is an allochthonous organism in Australia. Oogonial size was found to vary according to position within the mating plate and according to the particular isolates used, although different geographical groups of isolates could not be dis- tinguished. Abnormally small oogonia were produced in matings involving three of the A2 isolates. The taxonomic significance of these findings is discussed.

Distribution of understorey species in forest affected by Phytophthora cinnamomi in south-western Western Australia

2005 ◽  
Vol 53 (8) ◽  
pp. 813 ◽  
Author(s):  
K. L. McDougall ◽  
R. J. Hobbs ◽  
G. E. St J. Hardy
Keyword(s):  
Western Australia ◽  
Phytophthora Cinnamomi ◽  
Spatial Relationship ◽  
Common Species ◽  
Random Sets ◽  
Tree Cover ◽  
Jarrah Forest ◽  
Eucalyptus Marginata ◽  
Resistant Species ◽  
Study Sites

The introduced soil-borne pathogen Phytophthora cinnamomi Rands infects and kills a large number of species in the jarrah (Eucalyptus marginata Donn. ex Smith) forest of Western Australia, causing great floristic and structural change. Many of the floristic changes can be explained simply by the known susceptibility of species to infection. Some common species, however, are rarely found at infested sites but are thought to be resistant to infection. It has been postulated that such species may be affected by the change in habitat caused by the death of trees, and not by P. cinnamomi directly. If this were the case, such species should cluster around surviving trees at infested sites. The occurrence of a susceptible species in the vicinity of trees surviving at infested sites has also been reported. To investigate the spatial relationship between trees and understorey species, the positions of trees and selected perennial understorey species were mapped at two sites in jarrah forest long-affected by P. cinnamomi. Random sets of plants and trees were generated and used in simulations to test whether understorey species grew closer to trees than expected. Many understorey species, both resistant and susceptible to infection by P. cinnamomi, were found to grow closer than expected to trees currently growing at the sites and closer to the trees that would have been present at the time of infestation. This suggests that not only do these trees enable some resistant species to persist at infested sites but that they also offer protection to some susceptible species against damage by P. cinnamomi. The proximity of many understorey species to trees that are likely to have appeared at the study sites since the first infestation indicates that the maintenance and enhancement of tree cover at infested sites in the jarrah forest may limit the damage caused by P. cinnamomi and assist in the protection of biodiversity.

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