scholarly journals Structure‐based engineering of an infrared fluorescent protein marker

2013 ◽  
Vol 27 (S1) ◽  
Author(s):  
Stephanie Lynn Puetz ◽  
Jacqueline Meraz ◽  
Angela Varela ◽  
Brigitte Igova ◽  
Anna Baker ◽  
...  
2020 ◽  
Vol 295 (29) ◽  
pp. 9768-9785 ◽  
Author(s):  
Haruko Miyazaki ◽  
Tomoyuki Yamanaka ◽  
Fumitaka Oyama ◽  
Yoshihiro Kino ◽  
Masaru Kurosawa ◽  
...  

Huntington disease (HD) is a neurodegenerative disorder caused by expanded CAG repeats in the Huntingtin gene. Results from previous studies have suggested that transcriptional dysregulation is one of the key mechanisms underlying striatal medium spiny neuron (MSN) degeneration in HD. However, some of the critical genes involved in HD etiology or pathology could be masked in a common expression profiling assay because of contamination with non-MSN cells. To gain insight into the MSN-specific gene expression changes in presymptomatic R6/2 mice, a common HD mouse model, here we used a transgenic fluorescent protein marker of MSNs for purification via FACS before profiling gene expression with gene microarrays and compared the results of this “FACS-array” with those obtained with homogenized striatal samples (STR-array). We identified hundreds of differentially expressed genes (DEGs) and enhanced detection of MSN-specific DEGs by comparing the results of the FACS-array with those of the STR-array. The gene sets obtained included genes ubiquitously expressed in both MSNs and non-MSN cells of the brain and associated with transcriptional regulation and DNA damage responses. We proposed that the comparative gene expression approach using the FACS-array may be useful for uncovering the gene cascades affected in MSNs during HD pathogenesis.


2019 ◽  
Vol 10 (1) ◽  
Author(s):  
Olena S. Oliinyk ◽  
Anton A. Shemetov ◽  
Sergei Pletnev ◽  
Daria M. Shcherbakova ◽  
Vladislav V. Verkhusha

FEBS Journal ◽  
2014 ◽  
Vol 281 (9) ◽  
pp. 2284-2298 ◽  
Author(s):  
Olesya V. Stepanenko ◽  
Grigory S. Bublikov ◽  
Olga V. Stepanenko ◽  
Daria M. Shcherbakova ◽  
Vladislav V. Verkhusha ◽  
...  

2011 ◽  
Vol 287 (10) ◽  
pp. 7000-7009 ◽  
Author(s):  
Michele E. Auldridge ◽  
Kenneth A. Satyshur ◽  
David M. Anstrom ◽  
Katrina T. Forest

2021 ◽  
Author(s):  
Kiryl Piatkevich ◽  
Hanbin Zhang ◽  
Stavrini Papadaki ◽  
Xiaoting Sun ◽  
Luxia Yao ◽  
...  

Abstract Recent progress in fluorescent protein development has generated a large diversity of near-infrared fluorescent proteins, which are rapidly becoming popular probes for a variety of imaging applications. To assist end-users with a selection of the right near-infrared fluorescent protein for a given application, we will conduct a quantitative assessment of intracellular brightness, photostability, and oligomeric state of 19 near-infrared fluorescent proteins in cultured mammalian cells. The top-performing proteins will be further validated for in vivo imaging of neurons in C. elegans, zebrafish, and mice. We will also assess the applicability of the selected NIR FPs for expansion microscopy and two-photon imaging.


2021 ◽  
Vol 22 (24) ◽  
pp. 13631
Author(s):  
Spase Stojanov ◽  
Tina Vida Plavec ◽  
Julijana Kristl ◽  
Špela Zupančič ◽  
Aleš Berlec

Lactobacilli are a promising natural tool against vaginal dysbiosis and infections. However, new local delivery systems and additional knowledge about their distribution and mechanism of action would contribute to the development of effective medicine. This will be facilitated by the introduction of the techniques for effective, inexpensive, and real-time tracking of these probiotics following their release. Here, we engineered three model vaginal lactobacilli (Lactobacillus crispatus ATCC 33820, Lactobacillus gasseri ATCC 33323, and Lactobacillus jensenii ATCC 25258) and a control Lactobacillus plantarum ATCC 8014 to express fluorescent proteins with different spectral properties, including infrared fluorescent protein (IRFP), green fluorescent protein (GFP), red fluorescent protein (mCherry), and blue fluorescent protein (mTagBFP2). The expression of these fluorescent proteins differed between the Lactobacillus species and enabled quantification and discrimination between lactobacilli, with the longer wavelength fluorescent proteins showing superior resolving power. Each Lactobacillus strain was labeled with an individual fluorescent protein and incorporated into poly (ethylene oxide) nanofibers using electrospinning, as confirmed by fluorescence and scanning electron microscopy. The lactobacilli retained their fluorescence in nanofibers, as well as after nanofiber dissolution. To summarize, vaginal lactobacilli were incorporated into electrospun nanofibers to provide a potential solid vaginal delivery system, and the fluorescent proteins were introduced to distinguish between them and allow their tracking in the future probiotic-delivery studies.


2020 ◽  
Vol 32 (17) ◽  
pp. 2000964 ◽  
Author(s):  
Jingjing Li ◽  
Bo Li ◽  
Jing Sun ◽  
Chao Ma ◽  
Sikang Wan ◽  
...  

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