scholarly journals Geometric and topological approaches to shape variation in Ginkgo leaves

2021 ◽  
Vol 8 (11) ◽  
Author(s):  
Haibin Hang ◽  
Martin Bauer ◽  
Washington Mio ◽  
Luke Mander

Leaf shape is a key plant trait that varies enormously. The range of applications for data on this trait requires frequent methodological development so that researchers have an up-to-date toolkit with which to quantify leaf shape. We generated a dataset of 468 leaves produced by Ginkgo biloba , and 24 fossil leaves produced by evolutionary relatives of extant Ginkgo . We quantified the shape of each leaf by developing a geometric method based on elastic curves and a topological method based on persistent homology. Our geometric method indicates that shape variation in modern leaves is dominated by leaf size, furrow depth and the angle of the two lobes at the leaf base that is also related to leaf width. Our topological method indicates that shape variation in modern leaves is dominated by leaf size and furrow depth. We have applied both methods to modern and fossil material: the methods are complementary, identifying similar primary patterns of variation, but also revealing different aspects of morphological variation. Our topological approach distinguishes long-shoot leaves from short-shoot leaves, both methods indicate that leaf shape influences or is at least related to leaf area, and both could be applied in palaeoclimatic and evolutionary studies of leaf shape.

2020 ◽  
Author(s):  
Luke Mander ◽  
Martin Bauer ◽  
Haibin Hang ◽  
Washington Mio

AbstractLeaf shape is a key plant trait that varies enormously. The diversity of leaf shape, and the range of applications for data on this trait, requires frequent methodological developments so that researchers have an up-to-date toolkit with which to quantify leaf shape. We generated a dataset of 468 leaves produced by Ginkgo biloba, and 24 fossil leaves produced by evolutionary relatives of extant Ginkgo. We quantified the shape of each leaf by developing a geometric method based on elastic curves and a topological method based on persistent homology. Our geometric method indicates that shape variation in modern leaves is dominated by leaf size, furrow depth, and the angle of the two lobes at the base of the leaf that is also related to leaf width. Our topological method indicates that shape variation in modern leaves is dominated by leaf size and furrow depth. Both methods indicate that there is greater diversity in the shape of fossil leaves compared to modern leaves. The two approaches we have described can be applied to modern and fossil material, and are complementary: identifying similar primary patterns of variation, but revealing some different aspects of morphological variation.


2019 ◽  
Author(s):  
Sonal Gupta ◽  
David M. Rosenthal ◽  
John R. Stinchcombe ◽  
Regina S. Baucom

AbstractLeaf shape, a spectacularly diverse plant trait, varies across taxonomic levels, geography, and in response to environmental differences. However, comprehensive intraspecific analyses of leaf shape variation across variable environments is surprisingly absent. Here, we perform a multi-level analysis of leaf shape using diverse accessions of sweetpotato (Ipomoea batatas), and uncover the role of genetics, environment, and GxE on this important trait.We examine leaf shape using a variety of morphometric analyses, and complement this with a transcriptomic survey to identify gene expression changes associated with shape variation. Additionally, we examine the role of genetics and environment on leaf shape by performing field studies in two geographically separate common gardens.We show that extensive leaf shape variation exists withinI. batatas, and identify promising candidate genes underlying this variation. Interestingly, when considering traditional measures, we find that genetic factors are largely responsible for most of leaf shape variation, but that the environment is highly influential when using more quantitative measuresvialeaf outlines.This extensive and multi-level examination of leaf shape shows an important role of genetics underlying a potentially important agronomic trait, and highlights that the environment can be a strong influence when using more quantitative measures of leaf shape.


2021 ◽  
Author(s):  
◽  
Karl Graeme Yager

<p>There is an immense amount of variation in leaf shape, size, and colouration, both across and within plant species. Leaf shape and colour, in some instances, can be attributed as a physiological response to particular abiotic stressors. However, leaf shape, size, and colour are used by herbivores to identify sources of palatable foliage for food. It is possible, therefore, that an undefended plant might gain protection from herbivores by matching leaf characteristics of a chemically defended species. The matching of defensive signals by an undefended species in order to dupe a predator is known as Batesian mimicry, and whilst believed to be a relatively common phenomenon amongst animals, it has yet to be proven in plants. The foliage of Alseuosmia pusilla (Colenso) A. Cunningham, is strikingly similar to the human eye to that of Pseudowintera colorata (Raoul) Dandy, an unrelated sympatric species found in New Zealand. Unlike the foliage of A. pusilla, that of P. colorata contains a number of secondary metabolites associated with herbivore defence, including a sesquiterpene dialdehyde known as polygodial, a known potent insect antifeedant that imparts a pungent peppery taste when eaten. It has been hypothesised that this similarity evolved under browsing pressure from nine species of large extinct herbivorous birds, collectively known as moa. Whilst moa became extinct soon after the arrival of humans, the large herbivore guild has been effectively replaced by a range of introduced mammalian herbivores including several species of deer, though to what degree remains controversial.  In chapter two, I established a robust spatially explicit morphometric analysis method to test how similar the leaves of A. pusilla and P. colorata leaves were, and whether leaf shape was a distinctive trait within their shared habitat. Using the Cartesian coordinates of leaf margins as descriptors of leaf shape, I found that P. colorata leaves were morphologically distinct from all of the neighbouring species except for those of A. pusilla. A. pusilla individuals were more similar to neighbouring than to distant P. colorata, and 90% of leaf shape variation in the two species varied similarly across an elevational gradient. The data are consistent with Batesian mimicry, wherein the conspicuous characteristic of a defended model is replicated by an undefended mimic across its entire growing range.  In chapter three, I tested how leaf shape variation within, and between, A. pusilla and P. colorata responded when exposed to high levels of mammalian herbivory. I demonstrated that in a forest population of P. colorata and A. pusilla exposed to high mammalian herbivory pressure, leaf shape variation is reduced in both focal species, but not in other sympatric species. This is consistent with Batesian mimicry, wherein increased herbivory pressure selects for a stronger signal in the distinctive characteristic of the defended plant, and through the selection for mimicry, variation in the mimic’s phenotype converges on the model’s phenotype. Additionally, when alternative palatable food is preferentially targeted, P. colorata increased in abundance along with a proportionate increase in A. pusilla’s abundance. Invertebrate herbivory was estimated to be similar on both species at both sites.  In chapter four, I tested the hypothesis that A. pusilla is a Batesian mimic of P. colorata using farmed red deer (Cervus elaphus scoticus) in feeding trials. The deer found A. pusilla more palatable than P. colorata, and after eating a P. colorata individual, they became reluctant to eat another plant. Although the two plants differ significantly in volatile organic compound emissions, deer were equally likely to first eat an A. pusilla as they were a P. colorata, therefore were unable to use olfactory cues, or visually differentiate between the two species. As the relative abundance of P. colorata increased, herbivory damage was lower, both in the defended P. colorata and in the undefended A. pusilla. This study provides the first unequivocal proof of defensive Batesian mimicry in plants.  In chapter five, using humans as surrogate herbivores, I tested how leaf shape and colour can be used as cues or signals by herbivores when foraging for food under different conditions. Subjects found leaf size a distracting characteristic, foraging more effectively when A. pusilla and P. colorata individuals were most similar in 94% of their shared shape variation. The trait of leaf colour, whilst unreliable by itself, acted to potentiate the trait of leaf shape, as a signal or cue. Fast feedback on species palatability improved accuracy in identifying A. pusilla, but neither fast nor slow feedback improved discriminability of P. colorata. A. pusilla leaves were harder to discriminate when presented on a “disruptive” backdrop. My results demonstrate that leaf shape can act as a signal or cue. These results indicate why further research into plant-herbivore communication is important and that it could provide powerful insights into the functional significance of leaf morphology.  This thesis provides a significant contribution to our understanding of how leaves function as signals or cues to herbivores in three ways: (i) it provides the first detailed and powerful quantitative evidence of leaf shape matching between two species, and demonstrates the importance of using a spatially explicit morphometric method when investigating leaf shape; (ii) it is the first to unequivocally prove defensive Batesian mimicry in plants; and (iii) it demonstrates that leaf traits can act as signals or cues.</p>


2017 ◽  
Author(s):  
Zoë Migicovsky ◽  
Mao Li ◽  
Daniel H. Chitwood ◽  
Sean Myles

AbstractApple (Malus spp.) is a widely grown and valuable fruit crop. Leaf shape and size are important for flowering in apple and may also be early indicators for other agriculturally valuable traits. We examined 9,000 leaves from 869 unique apple accessions using linear measurements and comprehensive morphometric techniques. We identified allometric variation in the length-to-width aspect ratio between accessions and species of apple. The allometric variation was due to variation in the width of the leaf blade, not length. Aspect ratio was highly correlated with the primary axis of morphometric variation (PC1) quantified using elliptical Fourier descriptors (EFDs) and persistent homology (PH). While the primary source of variation was aspect ratio, subsequent PCs corresponded to complex shape variation not captured by linear measurements. After linking the morphometric information with over 122,000 genome-wide SNPs, we found high narrow-sense heritability values even at later PCs, indicating that comprehensive morphometrics can capture complex, heritable phenotypes. Thus, techniques such as EFDs and PH are capturing heritable biological variation that would be missed using linear measurements alone, and which could potentially be used to select for a hidden phenotype only detectable using comprehensive morphometrics.


2021 ◽  
Author(s):  
◽  
Karl Graeme Yager

<p>There is an immense amount of variation in leaf shape, size, and colouration, both across and within plant species. Leaf shape and colour, in some instances, can be attributed as a physiological response to particular abiotic stressors. However, leaf shape, size, and colour are used by herbivores to identify sources of palatable foliage for food. It is possible, therefore, that an undefended plant might gain protection from herbivores by matching leaf characteristics of a chemically defended species. The matching of defensive signals by an undefended species in order to dupe a predator is known as Batesian mimicry, and whilst believed to be a relatively common phenomenon amongst animals, it has yet to be proven in plants. The foliage of Alseuosmia pusilla (Colenso) A. Cunningham, is strikingly similar to the human eye to that of Pseudowintera colorata (Raoul) Dandy, an unrelated sympatric species found in New Zealand. Unlike the foliage of A. pusilla, that of P. colorata contains a number of secondary metabolites associated with herbivore defence, including a sesquiterpene dialdehyde known as polygodial, a known potent insect antifeedant that imparts a pungent peppery taste when eaten. It has been hypothesised that this similarity evolved under browsing pressure from nine species of large extinct herbivorous birds, collectively known as moa. Whilst moa became extinct soon after the arrival of humans, the large herbivore guild has been effectively replaced by a range of introduced mammalian herbivores including several species of deer, though to what degree remains controversial.  In chapter two, I established a robust spatially explicit morphometric analysis method to test how similar the leaves of A. pusilla and P. colorata leaves were, and whether leaf shape was a distinctive trait within their shared habitat. Using the Cartesian coordinates of leaf margins as descriptors of leaf shape, I found that P. colorata leaves were morphologically distinct from all of the neighbouring species except for those of A. pusilla. A. pusilla individuals were more similar to neighbouring than to distant P. colorata, and 90% of leaf shape variation in the two species varied similarly across an elevational gradient. The data are consistent with Batesian mimicry, wherein the conspicuous characteristic of a defended model is replicated by an undefended mimic across its entire growing range.  In chapter three, I tested how leaf shape variation within, and between, A. pusilla and P. colorata responded when exposed to high levels of mammalian herbivory. I demonstrated that in a forest population of P. colorata and A. pusilla exposed to high mammalian herbivory pressure, leaf shape variation is reduced in both focal species, but not in other sympatric species. This is consistent with Batesian mimicry, wherein increased herbivory pressure selects for a stronger signal in the distinctive characteristic of the defended plant, and through the selection for mimicry, variation in the mimic’s phenotype converges on the model’s phenotype. Additionally, when alternative palatable food is preferentially targeted, P. colorata increased in abundance along with a proportionate increase in A. pusilla’s abundance. Invertebrate herbivory was estimated to be similar on both species at both sites.  In chapter four, I tested the hypothesis that A. pusilla is a Batesian mimic of P. colorata using farmed red deer (Cervus elaphus scoticus) in feeding trials. The deer found A. pusilla more palatable than P. colorata, and after eating a P. colorata individual, they became reluctant to eat another plant. Although the two plants differ significantly in volatile organic compound emissions, deer were equally likely to first eat an A. pusilla as they were a P. colorata, therefore were unable to use olfactory cues, or visually differentiate between the two species. As the relative abundance of P. colorata increased, herbivory damage was lower, both in the defended P. colorata and in the undefended A. pusilla. This study provides the first unequivocal proof of defensive Batesian mimicry in plants.  In chapter five, using humans as surrogate herbivores, I tested how leaf shape and colour can be used as cues or signals by herbivores when foraging for food under different conditions. Subjects found leaf size a distracting characteristic, foraging more effectively when A. pusilla and P. colorata individuals were most similar in 94% of their shared shape variation. The trait of leaf colour, whilst unreliable by itself, acted to potentiate the trait of leaf shape, as a signal or cue. Fast feedback on species palatability improved accuracy in identifying A. pusilla, but neither fast nor slow feedback improved discriminability of P. colorata. A. pusilla leaves were harder to discriminate when presented on a “disruptive” backdrop. My results demonstrate that leaf shape can act as a signal or cue. These results indicate why further research into plant-herbivore communication is important and that it could provide powerful insights into the functional significance of leaf morphology.  This thesis provides a significant contribution to our understanding of how leaves function as signals or cues to herbivores in three ways: (i) it provides the first detailed and powerful quantitative evidence of leaf shape matching between two species, and demonstrates the importance of using a spatially explicit morphometric method when investigating leaf shape; (ii) it is the first to unequivocally prove defensive Batesian mimicry in plants; and (iii) it demonstrates that leaf traits can act as signals or cues.</p>


2017 ◽  
Vol 51 ◽  
pp. 242-250
Author(s):  
M. V. Dulin

Tetralophozia setiformis is a widespread species occurring usually without organs of sexual and asexual reproduction. Gemmae of Tetralophozia setiformis were observed for the second time in Russia and Eurasia in the Northern Urals, Komi Republic. They form compact masses over upper leaves. The compact masses consist largely (70 %) of immature gemmae. Description of gemmae and gemmiparous shoots from the Northern Urals and their comparison with those from the other known localities, namely British Columbia (Canada) and the Murmansk Region (European Russia) were carried out. The gemmiparous plants of T. setiformis from the Northern Urals have approximately the same width as plants without gemmae but they are shorter. The leaves of gemmiparous plants from the Northern Urals are similar to leaves of gemmiparous plants from British Columbia. The leaf shape in upper part of the gemmiparous shoots varies from the typical to ± modified from gemmae production. These leaf shape transitions include reduction of leaf size and lobe number from 4 to 2–3, suppression of development and disappearance of characteristic teeth at the base of sinus. Gemmae size (17 × 22 μm) of plants from the Northern Urals is within variability recorded for plants from the Murmansk Region and British Columbia.


2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Yanping Zhang ◽  
Jing Peng ◽  
Xiaohui Yuan ◽  
Lisi Zhang ◽  
Dongzi Zhu ◽  
...  

AbstractRecognizing plant cultivars reliably and efficiently can benefit plant breeders in terms of property rights protection and innovation of germplasm resources. Although leaf image-based methods have been widely adopted in plant species identification, they seldom have been applied in cultivar identification due to the high similarity of leaves among cultivars. Here, we propose an automatic leaf image-based cultivar identification pipeline called MFCIS (Multi-feature Combined Cultivar Identification System), which combines multiple leaf morphological features collected by persistent homology and a convolutional neural network (CNN). Persistent homology, a multiscale and robust method, was employed to extract the topological signatures of leaf shape, texture, and venation details. A CNN-based algorithm, the Xception network, was fine-tuned for extracting high-level leaf image features. For fruit species, we benchmarked the MFCIS pipeline on a sweet cherry (Prunus avium L.) leaf dataset with >5000 leaf images from 88 varieties or unreleased selections and achieved a mean accuracy of 83.52%. For annual crop species, we applied the MFCIS pipeline to a soybean (Glycine max L. Merr.) leaf dataset with 5000 leaf images of 100 cultivars or elite breeding lines collected at five growth periods. The identification models for each growth period were trained independently, and their results were combined using a score-level fusion strategy. The classification accuracy after score-level fusion was 91.4%, which is much higher than the accuracy when utilizing each growth period independently or mixing all growth periods. To facilitate the adoption of the proposed pipelines, we constructed a user-friendly web service, which is freely available at http://www.mfcis.online.


1996 ◽  
Vol 351 (1348) ◽  
pp. 1671-1677 ◽  

Leaves display an enormous array of sizes and shapes. Although these attributes appear to have evolved primarily in response to abiotic conditions in the plant’s habitat, the importance of insect herbivores as additional selective agents is still poorly understood. A necessary requirem ent for leaf size and shape to evolve in response to attack by insects is that insects must respond to and/or be affected by, leaf morphology. We tested leaf-shape preferences in adult flea beetles ( Phyllotreta spp.) feeding on the highly variable rosette leaves of Capsella bursa-pastoris . Contrary to theoretical expectation (Brown & Lawton 1991), leaves with deeply lobed margins were more intensely damaged, both in field-collected and experimental plants. In two ancillary experiments with Capsella , we found that Spodoptera caterpillars showed no preferences for leaf shape, but that adult vine weevils ( Otiorhynchus sulcatus ) did, preferring (as predicted), undivided over divided leaves. We conclude that Brown & Law ton’s (1991) hypothesis is at best weakly supported by laboratory data for vine weevils, refuted by laboratory data for Spodoptera , and consistently refuted by both laboratory and field data for flea beetles. Although the experiment tried to reduce confounding variables to a minimum, interpretation was complicated by correlations between leaf shape and other developmental parameters of the plants, and highlights the difficulty of disentangling leaf-shape effects from other confounding factors.


Phytotaxa ◽  
2017 ◽  
Vol 317 (4) ◽  
pp. 292 ◽  
Author(s):  
JULIO ANTONIO LOMBARDI ◽  
MARCELA SERNA GONZÁLEZ

A new South American species of Salacia (Celastraceae, Salacioideae) found in Colombia and Venezuela, Salacia fugax Lombardi & M.Serna is described here. It is characterized by its indument, small long acuminate leaves with short petioles, branched inflorescences, flowers with an annular-pulvinate disk, and small pyriform fruits. This new species resembles S. mennegana J.Hedin ex Lombardi and S. opacifolia (J.F.Macbr.) A.C.Sm. by its short petioles, leaf shape, slender branched inflorescence, perianth form, and similar disc, but S. fugax differs by its hairs, leaf size and apex, calyx, and fruit size and shape.


Botany ◽  
2009 ◽  
Vol 87 (2) ◽  
pp. 210-221 ◽  
Author(s):  
Julia Nowak ◽  
Adam Nowak ◽  
Usher Posluszny

Compound palm leaf development is unique and consists of two processes. First, the primordial tissue folds through differential growth, forming plications. Second, these plications separate through an abscission-like process, forming leaflets. The second process of leaflet separation allows for the development of compound leaves. The question that this study addresses concerns the development of bifid leaves, as they do not form leaflets but only develop a cleft through an apical incision. The ideal genus to use for this study is Chamaedorea as it includes species with both pinnate and bifid leaves. Chamaedorea fragrans (Ruiz & Pav.) Mart. and Chamaedorea stolonifera H. Wendl. ex Hook. f. were chosen as the species with adult bifid leaves. Although Chamaedorea seifrizii Burret is a pinnate-leaved palm, its juvenile leaves are bifid. Scanning electron microscopy and light microscopy were used to study the development of bifid leaves. Our results indicate that neither of these bifid palms develop separation sites within the lamina, but rather the apical cleft develops through “late leaflet separation” or by an abscission-like process. In contrast, C. seifrizii juvenile leaves exhibit “early leaflet separation” when developing the apical cleft.


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