Geometric and topological approaches to shape variation in Ginkgo leaves

Leaf shape is a key plant trait that varies enormously. The range of applications for data on this trait requires frequent methodological development so that researchers have an up-to-date toolkit with which to quantify leaf shape. We generated a dataset of 468 leaves produced by Ginkgo biloba , and 24 fossil leaves produced by evolutionary relatives of extant Ginkgo . We quantified the shape of each leaf by developing a geometric method based on elastic curves and a topological method based on persistent homology. Our geometric method indicates that shape variation in modern leaves is dominated by leaf size, furrow depth and the angle of the two lobes at the leaf base that is also related to leaf width. Our topological method indicates that shape variation in modern leaves is dominated by leaf size and furrow depth. We have applied both methods to modern and fossil material: the methods are complementary, identifying similar primary patterns of variation, but also revealing different aspects of morphological variation. Our topological approach distinguishes long-shoot leaves from short-shoot leaves, both methods indicate that leaf shape influences or is at least related to leaf area, and both could be applied in palaeoclimatic and evolutionary studies of leaf shape.

Genome-Wide Identification of Brassinosteroid Signaling Downstream Genes in Nine Rosaceae Species and Analyses of Their Roles in Stem Growth and Stress Response in Apple

Brassinosteroid signaling downstream genes regulate many important agronomic traits in rice. However, information on such genes is limited in Arabidopsis and Rosaceae species. We identified these genes in Arabidopsis and nine Rosaceae species. They were, respectively, named based on chromosomal locations. Segmental duplication and whole-genome duplication under purifying selection, as determined by Ka/Ks analysis, likely contributed to Rosaceae gene expansion. Apple (Malus domestica), Arabidopsis, and rice genes were generally similar, while several Rosaceae genes differed from their rice homologs in various characteristics, such as gene length, subcellular localization, transmembrane topology, conserved domains, secondary structures, and responses to external signals. The brassinosteroid downstream genes in apple were, respectively, induced or repressed by five phytohormones. Furthermore, these apple downstream genes were differentially expressed in different apple grafting combinations (“Nagafu No. 2”/“Malling 9” and “Nagafu No. 2”/“Nagafu No. 2”) and long–short shoot varieties (“Yanfu No. 6” and “Nagafu No. 2”). Responses of the MdBZR genes to diverse stress signals were examined and candidate hub genes were identified. These findings indicated that several brassinosteroid signaling downstream genes in Rosaceae functionally differed from their rice homologs, and certain apple genes may play roles in plant height and stress responses. This study provided valuable information and presented enriched biological theories on brassinosteroid signaling downstream genes in apple. Identification of such genes serve to help expand apple breeding and growth. This study provides useful information for brassinosteroid signaling downstream genes.

Functional Analysis of Aux/IAAs and SAURs on Shoot Growth of Lagerstroemia indica through Virus-Induced Gene Silencing (VIGS)

The plant hormone auxin plays an important role in cell division and the elongation of shoots to affect the plant architecture, which has a great impact on the plant yield, fruit quality and ornamental value; however, the regulatory mechanism of auxin controlling shoot growth is unclear in crape myrtle. In this study, two auxin/indole-3-acetic acid (Aux/IAA) genes and four small auxin upregulated RNA (SAUR) genes of auxin response gene families were isolated from dwarf and non-dwarf progenies of Lagerstroemia indica and then functionally characterized. Sequence alignment revealed that the six genes contain typical conserved domains. Different expression patterns of the six genes at three different tissue stages of two types of progenies showed that the regulation mechanism of these genes may be different. Functional verification of the six genes upon shoot growth of crape myrtle was performed via virus-induced gene silencing. When the LfiAUX22 gene was silenced, a short shoot phenotype was observed in non-dwarf progenies, accompanied by decreased auxin content. Therefore, we preliminarily speculated that LfiAUX22 plays an important role in the shoot growth of crape myrtle, which regulates the accumulation of indole-3-acetic acid (IAA) and the elongation of cells to eventually control shoot length.

Climate factors influence on biological features of Crataegus maximowiczii C.K. Schneid. when introduced within the arctic circle

This study evaluates the development of Crataegus maximowiczii when introduced to the Kola Peninsula. The paper presents the timing of the onset of phenological phases, morphometric indicators of inflorescences and flowers, fruits, features of seed reproduction. C. maximowiczii is a plant with an early onset and short growing season. C. maximowiczii has a short shoot growth period, a short prefloral period, annual flowering and fruiting. The studied specimens of C. maximowiczii plants were characterized by heterogeneous morphometric parameters of flowers and inflorescences. Specimens with a denser inflorescence are characterized by a greater number of flowers per inflorescence, specimens with small flower sizes form medium-sized inflorescences. The species specificity factor affects the morphometric characteristics of inflorescences. Fruiting indicators largely depended on external conditions, among which temperature and relative humidity of the air have little effect. Plants of C. maximowiczii, when introduced to the Kola Peninsula, can be classified as small-fruited. The highest germination capacity is possessed by the samples with average values of mass, which have undergone combined pre-sowing preparation. The relative humidity of the air during the growing season has a greater effect than the temperature regime on the values of the mass of seeds for a given species under conditions of introduction.

Vascular bundle modifications in nodes and internodes of climbing Marantaceae

Nodes are interfaces between stems and leaves. Vascular bundles originate here and elongate into leaves and internodes. In Marantaceae, internodal bundles are highly diverse, including inverted bundles in the climbing genus Haumania. The objective of this paper is to characterize bundle forms, their position across the stem and their connection to leaves and short shoots in Haumania spp. and other unrelated African branch-angle climbers in the family (Hypselodelphys, Trachyphrynium). We question whether bundle inversion is a genus-specific trait in Haumania or related to the climbing growth form. Vascular bundles in internodes are scattered across the stem diameter in a characteristic pattern. Four (to five) bundle types follow each other in a centripetal order from highly sclerenchymatic ‘a’-bundles close to the epidermis to ‘d’-bundles in the centre with a low sclerenchyma proportion. Inverted bundles only appear in internodes of Haumania, making this trait a synapomorphy for the genus. The nodes show stem, leaf and short shoot bundles in a remarkably diverse pattern with partitioned phloem clusters and apparently augmented xylem elements. Our preliminary conclusion is that the inversion of bundles happens when leaf and short shoot traces join the main axis bundle layers.

Short Shoot Growth and Reproduction Response to Light Conditions Vary with Order Branching in the Proximal Part of C. atlantica Crown

This study compared the effects of shading in individual branch orders 2 and 3 on the needle survival, growth, and reproduction of five categories of short shoots of the proximal part of wild Atlas cedar (Cedrus atlantica (Endl.) G. Manetti ex Carrière). The sun exposure did not affect the number of short shoots in the two branch orders, whereas light compared to shade only stimulates the unbranched short shoot elongation of the branch order 3. The impact of shade exposure compared to sun on the loss of needles depends on the order of branching; it is weak to order 2 and increases to higher order. This effect in the branch order 3 is achieved by a significant decrease of the fallen leaf number in the unbranched short shoot SSnr and the short shoot SS/T worn by Twigs while in the branch order 2 only short shoot SS (nr + r) loses significantly few needles. In terms of short shoot extension and needle loss, the SS/T of the branch order 3 behaves in the same way as the SS (nr + r) of the branch order 2. The shadow compared to sunlit only decreases significantly the production of pollen strobili of the branch order 2. Close relationships between short shoot extension, leaf life span, and pollen strobili production of axillary products in the proximal part of C. atlantica crown were found.

Differences in growth and gas exchange between southern and northern provenances of silver birch (Betula pendula Roth) in northern Europe

Due to its ubiquity across northern latitudes, silver birch (Betula pendula Roth) is an attractive model species for studying geographical trait variation and acclimation capacity. Six birch provenances from 60 to 67°N across Finland were grown in a common garden and studied for provenance and genotype variation. We looked for differences in height growth, photosynthetic gas exchange and chlorophyll content index (CCI) and compared the gas exchange of early and late leaves on short and long shoots, respectively. The provenances stratified into southern and northern groups. Northern provenances attained less height growth increment and had higher stomatal conductance (gs) and lower intrinsic water-use efficiency (WUE, Anet/gs) than southern provenances, whereas net photosynthesis (Anet) or CCI did not show clear grouping. Short shoot leaves had lower gs and higher WUE than long shoot leaves in all provenances, but there was no difference in Anet between shoot types. The separation of the provenances into two groups according to their physiological responses might reflect the evolutionary history of B. pendula. Latitudinal differences in gas exchange and water use traits can have plausible consequences for global carbon and water fluxes in a warming climate.