scholarly journals Interaction of the transmembrane domain of lysis protein E from bacteriophage ϕX174 with bacterial translocase MraY and peptidyl-prolyl isomerase SlyD

Microbiology ◽  
2006 ◽  
Vol 152 (10) ◽  
pp. 2959-2967 ◽  
Author(s):  
Sharon Mendel ◽  
Joanne M. Holbourn ◽  
James A. Schouten ◽  
Timothy D. H. Bugg

The molecular target for the bacteriolytic E protein from bacteriophage ϕX174, responsible for host cell lysis, is known to be the enzyme phospho-MurNAc-pentapeptide translocase (MraY), an integral membrane protein involved in bacterial cell wall peptidoglycan biosynthesis, with an essential role being played by peptidyl-prolyl isomerase SlyD. A synthetic 37 aa peptide Epep, containing the N-terminal transmembrane α-helix of E, was found to be bacteriolytic against Bacillus licheniformis, and inhibited membrane-bound MraY. The solution conformation of Epep was found by circular dichroism (CD) spectroscopy to be 100 % α-helical. No change in the CD spectrum was observed upon addition of purified Escherichia coli SlyD, implying that SlyD does not catalyse prolyl isomerization upon E. However, Epep was found to be a potent inhibitor of SlyD-catalysed peptidyl-prolyl isomerization (IC50 0.15 μM), implying a strong interaction between E and SlyD. Epep was found to inhibit E. coli MraY activity when assayed in membranes (IC50 0.8 μM); however, no inhibition of solubilized MraY was observed, unlike nucleoside natural product inhibitor tunicamycin. These results imply that the interaction of E with MraY is not at the MraY active site, and suggest that a protein–protein interaction is formed between E and MraY at a site within the transmembrane region.

2003 ◽  
Vol 14 (10) ◽  
pp. 4238-4249 ◽  
Author(s):  
Markus Geisler ◽  
H. Üner Kolukisaoglu ◽  
Rodolphe Bouchard ◽  
Karla Billion ◽  
Joachim Berger ◽  
...  

Null-mutations of the Arabidopsis FKBP-like immunophilin TWISTED DWARF1 (TWD1) gene cause a pleiotropic phenotype characterized by reduction of cell elongation and disorientated growth of all plant organs. Heterologously expressed TWD1 does not exhibit cis-trans-peptidylprolyl isomerase (PPIase) activity and does not complement yeast FKBP12 mutants, suggesting that TWD1 acts indirectly via protein-protein interaction. Yeast two-hybrid protein interaction screens with TWD1 identified cDNA sequences that encode the C-terminal domain of Arabidopsis multidrugresistance-like ABC transporter AtPGP1. This interaction was verified in vitro. Mapping of protein interaction domains shows that AtPGP1 surprisingly binds to the N-terminus of TWD1 harboring the cis-trans peptidyl-prolyl isomerase-like domain and not to the tetratrico-peptide repeat domain, which has been shown to mediate protein-protein interaction. Unlike all other FKBPs, TWD1 is shown to be an integral membrane protein that colocalizes with its interacting partner AtPGP1 on the plasma membrane. TWD1 also interacts with AtPGP19 (AtMDR1), the closest homologue of AtPGP1. The single gene mutation twd1-1 and double atpgp1-1/atpgp19-1 (atmdr1-1) mutants exhibit similar phenotypes including epinastic growth, reduced inflorescence size, and reduced polar auxin transport, suggesting that a functional TWD1-AtPGP1/AtPGP19 complex is required for proper plant development.


2020 ◽  
Author(s):  
Chrysoula Zografou ◽  
Maria Dimou ◽  
Panagiotis Katinakis

AbstractFklB is a member of the FK506-binding proteins (FKBPs), a family that consists of five genes in Escherichia coli. Little is known about the physiological and functional role of FklB in bacterial movement. In the present study, FklB knock-out mutant ΔfklB presented an increased swarming and swimming motility and biofilm formation phenotype, suggesting that FklB is a negative regulator of these cellular processes. Complementation with Peptidyl-prolyl isomerase (PPIase)-deficient fklB gene (Y181A) revealed that the defects in biofilm formation were not restored by Y181A, indicating that PPIase activity of FklB is modulating biofilm formation in E. coli. The mean cell length of ΔfklB swarming cells was significantly smaller as compared to the wild-type BW25113. Furthermore, the mean cell length of swarming and swimming wild-type and ΔfklB cells overexpressing fklB or Y181A was considerably larger, suggesting that PPIase activity of FklB plays a role in cell elongation and/or cell division. A multi-copy suppression assay demonstrated that defects in motility and biofilm phenotype were compensated by overexpressing sets of PPIase-encoding genes. Taken together, our data represent the first report demonstrating the involvement of FklB in cellular functions of E. coli.


2007 ◽  
Vol 189 (21) ◽  
pp. 7549-7555 ◽  
Author(s):  
Dustin L. Johnson ◽  
James B. Mahony

ABSTRACT Chlamydophila pneumoniae is an obligate intracellular bacterium that causes bronchitis, pharyngitis, and pneumonia and may be involved in atherogenesis and Alzheimer's disease. Genome sequencing has identified three eukaryote-type serine/threonine protein kinases, Pkn1, Pkn5, and PknD, that may be important signaling molecules in Chlamydia. Full-length PknD was cloned and expressed as a histidine-tagged protein in Escherichia coli. Differential centrifugation followed by sodium carbonate treatment of E. coli membranes demonstrated that His-PknD is an integral membrane protein. Fusions of overlapping PknD fragments to alkaline phosphatase revealed that PknD contains a single transmembrane domain and that the kinase domain is in the cytoplasm. To facilitate solubility, the kinase domain was cloned and expressed as a glutathione S-transferase (GST) fusion protein in E. coli. Purified GST-PknD kinase domain autophosphorylated, and catalytic mutants (K33G, D156G, and K33G-D156G mutants) and activation loop mutants (T185A and T193A) were inactive. PknD phosphorylated recombinant Cpn0712, a type III secretion YscD homolog that has two forkhead-associated domains. Thin-layer chromatography revealed that the PknD kinase domain autophosphorylated on threonine and tyrosine and phosphorylated the FHA-2 domain of Cpn0712 on serine and tyrosine. To our knowledge, this is the first demonstration of a bacterial protein kinase with amino acid specificity for both serine/threonine and tyrosine residues and this is the first study to show phosphorylation of a predicted type III secretion structural protein.


2020 ◽  
Vol 152 (3) ◽  
Author(s):  
Robert C. Klipp ◽  
Megan M. Cullinan ◽  
John R. Bankston

Stomatin (STOM) is a monotopic integral membrane protein found in all classes of life that has been shown to regulate members of the acid-sensing ion channel (ASIC) family. However, the mechanism by which STOM alters ASIC function is not known. Using chimeric channels, we combined patch-clamp electrophysiology and FRET to search for regions of ASIC3 critical for binding to and regulation by STOM. With this approach, we found that regulation requires two distinct sites on ASIC3: the distal C-terminus and the first transmembrane domain (TM1). The C-terminal site is critical for formation of the STOM–ASIC3 complex, while TM1 is required only for the regulatory effect. We then looked at the mechanism of STOM-dependent regulation of ASIC3 and found that STOM does not alter surface expression of ASIC3 or shift the pH dependence of channel activation. However, a point mutation (Q269G) that prevents channel desensitization also prevents STOM regulation, suggesting that STOM may alter ASIC3 currents by stabilizing the desensitized state of the channel. Based on these findings, we propose a model whereby STOM is anchored to the channel via a site on the distal C-terminus and stabilizes the desensitized state of the channel via an interaction with TM1.


2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Benjamin Wiseman ◽  
Ram Gopal Nitharwal ◽  
Göran Widmalm ◽  
Martin Högbom

AbstractLipopolysaccharides are important components of the bacterial cell envelope that among other things act as a protective barrier against the environment and toxic molecules such as antibiotics. One of the most widely disseminated pathways of polysaccharide biosynthesis is the inner membrane bound Wzy-dependent pathway. Here we present the 3.0 Å structure of the co-polymerase component of this pathway, WzzB from E. coli solved by single-particle cryo-electron microscopy. The overall architecture is octameric and resembles a box jellyfish containing a large bell-shaped periplasmic domain with the 2-helix transmembrane domain from each protomer, positioned 32 Å apart, encircling a large empty transmembrane chamber. This structure also reveals the architecture of the transmembrane domain, including the location of key residues for the Wzz-family of proteins and the Wzy-dependent pathway present in many Gram-negative bacteria, explaining several of the previous biochemical and mutational studies and lays the foundation for future investigations.


2019 ◽  
Author(s):  
Robert C. Klipp ◽  
Megan M. Cullinan ◽  
John R. Bankston

AbstractStomatin is a monotopic integral membrane protein found in all classes of life that has been shown to regulate members of the Acid-Sensing Ion Channel (ASIC) family. However, the mechanism by which Stomatin alters ASIC function is not known. Using chimeric channels, we combined patch clamp electrophysiology and FRET to search for regions of ASIC3 critical for binding to and regulation by Stomatin. With this approach, we found that regulation requires two distinct sites on ASIC3: the distal C-terminus and the first transmembrane domain. Mutation of the C-terminal site disrupts binding and regulation whereas disruption of the transmembrane site eliminates functional regulation. We then showed that Stomatin does not alter surface expression using fluorescence imaging and a surface biotinylation assay. Based on these findings, we propose a model whereby STOM is anchored to the channel via a site on the distal C-terminus but alters ASIC3 gating through action on TM1.


Blood ◽  
2004 ◽  
Vol 104 (11) ◽  
pp. 1722-1722
Author(s):  
Emily M. Kerestes ◽  
James H. Morrissey

Abstract Tissue factor (TF), an integral membrane protein, is the protein cofactor for coagulation factor VIIa (VIIa). The membrane-bound enzyme complex of TF and VIIa (TF:VIIa) initiates coagulation by activating factor X to Xa via limited proteolysis. Free VIIa has limited enzymatic activity, but when in complex with TF, its activity -- particularly its ability to cleave macromolecular substrates -- dramatically increases. VIIa in complex with truncated, soluble TF (sTF; consisting of the isolated extracellular domain) has much lower procoagulant activity than VIIa in complex with membrane-anchored TF in a suitable phospholipid membrane. When TF binds to VIIa, it re-aligns the active site of VIIa relative to the membrane surface, and it is hypothesized that one of the essential functions of protein cofactors in the clotting cascade is to position the active sites of their cognate proteases the proper distance and orientation above the membrane surface for optimal attack on the scissile bonds of membrane-bound protein substrates. We are testing how this alignment contributes to catalysis by altering the distance of TF above the phospholipid surface, thereby altering the position of VIIa’s active site above the membrane. We created a number of chimeras between the extracellular domain of TF and portions of the integral membrane protein, P-selectin, in order to raise TF varying distances above the phospholipid surface. TFCR9 is the shortest chimera, containing the 9th consensus repeat domain (CR) and transmembrane domain of P-selectin. TFCR8.9 contains the 8th and 9th CR domains as well as the transmembrane domain of P-selectin. TFLCR8.9 is identical to TFCR8.9 except that a flexible linker of four glycines and a serine residue repeated three times, (G4S)3, separates the TF and P-selectin sequences. All of the chimeras allosterically activated VIIa to the same extent that sTF or TF did (measured by cleavage of small peptidyl-amide substrates) confirming that the chimeras are properly folded. VIIa bound to the chimeras with Kd values ranging from 2.6 to 4.2 nM, which is equivalent to its interaction with sTF (Kd, 2-5 nM) rather than with TF in phospholipid membranes (Kd < 50 pM). This also confirms that the chimeras are properly folded and strongly suggests that binding interactions do not take place between VIIa and the membrane surface when VIIa binds to these chimeras. The chimera:VIIa complexes had reduced ability to activate X compared to TF:VIIa complexes, and the reduction was greater with the longer chimera, TFCR8.9, demonstrating a three-fold reduction in activity compared to TF. The chimeras had greatly reduced procoagulant activity compared to TF, with only 6-10% the specific activity of TF. Interestingly, the chimeras had significantly higher procoagulant activity if the chimera:VIIa complexes were pre-assembled before adding plasma, suggesting that the chimeras may have a defect in capturing VII and/or supporting its conversion to VIIa. These results imply that maintaining the proper distance between TF and the membrane surface is important not only for TF:VIIa to activate macromolecular substrates, but possibly also for TF to capture and bind membrane-bound VII and/or VIIa.


2004 ◽  
Vol 383 (2) ◽  
pp. 343-351 ◽  
Author(s):  
Christina CHEN ◽  
Sharmistha GHOSH ◽  
Anne GROVE

The histone-like HU protein is ubiquitous in the eubacteria. A role for Escherichia coli HU in compaction of the bacterial genome has been reported, along with regulatory roles in DNA replication, transposition, repair and transcription. We show here that HU from the human pathogen Helicobacter pylori, which has been implicated in the development of ulcers and gastric cancer, exhibits enhanced thermal stability and distinct DNA substrate specificity. Thermal denaturation of HpyHU (H. pylori HU) measured by CD spectroscopy yields a melting temperature (Tm) of 56.4±0.1 °C. HpyHU binds linear duplex DNA with a site size of ∼19 bp and with low affinity, but in striking contrast to E. coli HU, HpyHU has only modest preference for DNA with mismatches, nicks or gaps. Instead, HpyHU binds stably to four-way DNA junctions with half-maximal saturation of 5 nM. Substitution of two residues adjacent to the DNA-intercalating prolines attenuates both the preference for flexible DNA and the ability to bend and supercoil DNA. These observations suggest that proline intercalation generates hinges that must be stabilized by adjacent residues; insufficient stabilization leads to reduced bending and a failure to bind preferably to DNA with flexure points, such as gaps and mismatches.


Pneumologie ◽  
2006 ◽  
Vol 60 (02) ◽  
Author(s):  
S Hammerschmidt ◽  
PV Adrian ◽  
C Albert ◽  
S Estevão ◽  
T Hoogenboezem ◽  
...  

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