scholarly journals Multilevel selection favors fragmentation modes that maintain cooperative interactions in multispecies communities

2021 ◽  
Author(s):  
Gil J. B. Henriques ◽  
Simon van Vliet ◽  
Michael Doebeli

Reproduction is one of the requirements for evolution and a defining feature of life. Yet, across the tree of life, organisms reproduce in many different ways. Groups of cells (e.g., multicellular organisms, colonial microbes, or multispecies biofilms) divide by releasing propagules that can be single-celled or multicellular. What conditions determine the number and size of reproductive propagules? In multicellular organisms, existing theory suggests that single-cell propagules prevent the accumulation of deleterious mutations (e.g., cheaters). However, groups of cells, such as biofilms, sometimes contain multiple metabolically interdependent species. This creates a reproductive dilemma: small daughter groups, which prevent the accumulation of cheaters, are also unlikely to contain the species diversity that is required for ecological success. Here, we developed an individual-based, multilevel selection model to investigate how such multi-species groups can resolve this dilemma. By tracking the dynamics of groups of cells that reproduce by fragmenting into smaller groups, we identified fragmentation modes that can maintain cooperative interactions. We systematically varied the fragmentation mode and calculated the maximum mutation rate that communities can withstand before being driven to extinction by the accumulation of cheaters. We find that for groups consisting of a single species, the optimal fragmentation mode consists of releasing single-cell propagules. For multi-species groups we find various optimal strategies. With migration between groups, single-cell propagules are favored. Without migration, larger propagules sizes are optimal; in this case, group-size dependent fissioning rates can prevent the accumulation of cheaters. Our work shows that multi-species groups can evolve reproductive strategies that allow them to maintain cooperative interactions.

2021 ◽  
Vol 17 (9) ◽  
pp. e1008896
Author(s):  
Gil J. B. Henriques ◽  
Simon van Vliet ◽  
Michael Doebeli

Reproduction is one of the requirements for evolution and a defining feature of life. Yet, across the tree of life, organisms reproduce in many different ways. Groups of cells (e.g., multicellular organisms, colonial microbes, or multispecies biofilms) divide by releasing propagules that can be single-celled or multicellular. What conditions determine the number and size of reproductive propagules? In multicellular organisms, existing theory suggests that single-cell propagules prevent the accumulation of deleterious mutations (e.g., cheaters). However, groups of cells, such as biofilms, sometimes contain multiple metabolically interdependent species. This creates a reproductive dilemma: small daughter groups, which prevent the accumulation of cheaters, are also unlikely to contain the species diversity that is required for ecological success. Here, we developed an individual-based, multilevel selection model to investigate how such multi-species groups can resolve this dilemma. By tracking the dynamics of groups of cells that reproduce by fragmenting into smaller groups, we identified fragmentation modes that can maintain cooperative interactions. We systematically varied the fragmentation mode and calculated the maximum mutation rate that communities can withstand before being driven to extinction by the accumulation of cheaters. We find that for groups consisting of a single species, the optimal fragmentation mode consists of releasing single-cell propagules. For multi-species groups we find various optimal strategies. With migration between groups, single-cell propagules are favored. Without migration, larger propagules sizes are optimal; in this case, group-size dependent fissioning rates can prevent the accumulation of cheaters. Our work shows that multi-species groups can evolve reproductive strategies that allow them to maintain cooperative interactions.


Zootaxa ◽  
2009 ◽  
Vol 2213 (1) ◽  
pp. 1-46 ◽  
Author(s):  
MATTHEW J. COLLOFF

The morphology of the genus Scapheremaeus Berlese, 1910 is reviewed and characters of taxonomic utility delineated. Based on the morphological review, some 13 species-groups are outlined based on major morphotypes. There are two main categories: i) species that have a complete circumdorsal scissure with plicate microsculpture on the circumnotogastral plate and strongly contrasting microsculpture (foveolae, ridges or tubercles) on the centrodorsal plate (plicate species-groups), and ii) species with the circumdorsal scissure complete, incomplete or absent but with little or no contrast in microsculpture between the central and lateral regions: typically both regions foveolate or reticulate (non- plicate species-groups). A catalogue of world species of Scapheremaeus is provided. Scapheremaeus petrophagus (Banks, 1906) is not a Scapheremaeus but belongs to an undetermined genus in the Ameronothroidea. Cymbaeremaeus cyclops Oudemans, 1915 is recombined to Scapheremaeus. Five new species are described (S. angusi sp. nov., S. cheloniella sp. nov., S. ewani sp. nov., S. lambieae sp. nov., and S. pulleni sp. nov.) from soil and litter habitats in semi-arid Mallee eucalypt vegetation at Bookmark Biosphere Reserve, South Australia. These are the first members of the genus Scapheremaeus to be described from Australia, though undescribed species have been recorded previously. All the new species are morphologically closely-related and belong to a single species-group: Carinatus.


2020 ◽  
Vol 11 (12) ◽  
pp. 866-880 ◽  
Author(s):  
Xin Shao ◽  
Xiaoyan Lu ◽  
Jie Liao ◽  
Huajun Chen ◽  
Xiaohui Fan

AbstractFor multicellular organisms, cell-cell communication is essential to numerous biological processes. Drawing upon the latest development of single-cell RNA-sequencing (scRNA-seq), high-resolution transcriptomic data have deepened our understanding of cellular phenotype heterogeneity and composition of complex tissues, which enables systematic cell-cell communication studies at a single-cell level. We first summarize a common workflow of cell-cell communication study using scRNA-seq data, which often includes data preparation, construction of communication networks, and result validation. Two common strategies taken to uncover cell-cell communications are reviewed, e.g., physically vicinal structure-based and ligand-receptor interaction-based one. To conclude, challenges and current applications of cell-cell communication studies at a single-cell resolution are discussed in details and future perspectives are proposed.


2018 ◽  
Vol 115 (47) ◽  
pp. E11053-E11060 ◽  
Author(s):  
Ang Gao ◽  
Krishna Shrinivas ◽  
Paul Lepeudry ◽  
Hiroshi I. Suzuki ◽  
Phillip A. Sharp ◽  
...  

A hallmark of biological systems is that particular functions and outcomes are realized in specific contexts, such as when particular signals are received. One mechanism for mediating specificity is described by Fisher’s “lock and key” metaphor, exemplified by enzymes that bind selectively to a particular substrate via specific finely tuned interactions. Another mechanism, more prevalent in multicellular organisms, relies on multivalent weak cooperative interactions. Its importance has recently been illustrated by the recognition that liquid-liquid phase transitions underlie the formation of membraneless condensates that perform specific cellular functions. Based on computer simulations of an evolutionary model, we report that the latter mechanism likely became evolutionarily prominent when a large number of tasks had to be performed specifically for organisms to function properly. We find that the emergence of weak cooperative interactions for mediating specificity results in organisms that can evolve to accomplish new tasks with fewer, and likely less lethal, mutations. We argue that this makes the system more capable of undergoing evolutionary changes robustly, and thus this mechanism has been repeatedly positively selected in increasingly complex organisms. Specificity mediated by weak cooperative interactions results in some useful cross-reactivity for related tasks, but at the same time increases susceptibility to misregulation that might lead to pathologies.


Zootaxa ◽  
2021 ◽  
Vol 4965 (3) ◽  
pp. 401-436
Author(s):  
ROBB BENNETT ◽  
CLAUDIA COPLEY ◽  
DARREN COPLEY

Species of North American Cybaeus L. Koch (Araneae: RTA clade: Cybaeidae) are common moist-forest spiders classified in Holarctic and Californian clades. Here, in the third paper in a planned series reviewing the six Californian clade species groups, we review the species of the consocius group. We recognize nine species: Cybaeus consocius Chamberlin & Ivie, C. hesper Chamberlin & Ivie, C. hummeli Bennett spec. nov., C. opulentus spec. nov., C. pan Bennett spec. nov., C. penedentatus Bennett, C. simplex Roth, C. ubicki Bennett spec. nov., and C. vulpinus Bennett. Eight of these species have restricted distributions in the central Sierra Nevada Mountains of eastern California, U.S.A (C. opulentus, C. pan spec. nov., and C. vulpinus) or the central coast of western California (C. consocius, C. hesper, C. hummeli spec. nov., C. penedentatus, and C. ubicki spec. nov.); a single species (C. simplex), is relatively widely distributed in western Oregon, U.S.A. Descriptions, illustrations, distribution maps, and an identification key are provided as well as a discussion of conservation issues of relevance to the group. 


Zootaxa ◽  
2009 ◽  
Vol 2259 (1) ◽  
pp. 1-159 ◽  
Author(s):  
GARY A. P. GIBSON

Spalangia Latreille and Playaspalangia Yoshimoto, the only two genera classified in Spalangiinae (Chalcidoidea: Pteromalidae) are revised for the New World. Thirty-one species of Spalangia and a single species of Playaspalangia, P. rothi Yoshimoto, are recognized from the New World. One further name, Spalangia tarsalis Brèthes, is treated as a nomen dubium. European species of Spalangia not yet known from the New World are also discussed and illustrated relative to regional species, but are not treated formally. The following new synonymies are proposed: Spalangia erythromera brachyceps Bouček under Spalangia erythromera Förster n. syn., Spalangia bakeri Kieffer under Spalangia chontalensis Cameron n. syn., and Spalangia lanaiensis Ashmead under Spalangia impunctata Howard n. syn. Spalangia simplex Perkins is newly recorded from the New World and the following 13 species are described as new: Spalangia alyxia n. sp., Spalangia flavicrus n. sp., Spalangia imitator n. sp., Spalangia innuba n. sp., Spalangia leiopleura n. sp., Spalangia masneri n. sp., Spalangia nigroides n. sp., Spalangia noyesi n. sp., Spalangia plaumanni n. sp., Spalangia rugosifrons n. sp., Spalangia stictocephala n. sp., Spalangia stictocyla n. sp., and Spalangia xanthoscapa n. sp. The 2 genera and the 32 regional species of Spalangiinae are keyed, described and illustrated, and regional hosts and distributions are summarized for each species. Distribution maps document the known range of each of the species in the New World. For purposes of comparison of morphologically similar species, 7 informal species groups are recognized in Spalangia to include 29 of the 31 New World species: the attae-group (S. attae Burks, S. rugosifrons, S. stictocyla and S. stictocephala), the cameroni-group (S. cameroni Perkins, S. longepetiolata Bouček and S. gemina Bouček), the drosophilae- group (S. bethyloides Bouček, S. drosophilae Ashmead, S. flavicrus, S. impunctata, S. innuba, S. leiopleura and S. plaumanni), the endius group (S. endius Walker and S. nigripes), the nigra-group (S. alyxia, S. chontalensis, S. masneri, S. nigra Latreille, S. nigroides and S. nigroaenea Curtis), the noyesi-group (S. noyesi and S. xanthoscapa), and the subpunctata-group (S. erythromera, S. fuscipes, S. haematobiae Ashmead, S. imitator and S. subpunctata Förster).


Zootaxa ◽  
2006 ◽  
Vol 1385 (1) ◽  
pp. 1-30
Author(s):  
CURTIS EWING

The endemic Hawaiian nitidulid genus Apetasimus is revised and a key to species provided. Originally described for a single species, Apetasimus involucer, five new species are described and five species are moved from the endemic Hawaiian genus Orthostolus. The following new species are described: Apetasimus conditus sp. nov., A. ganeademus sp. nov., A. abstrusus sp. nov., A. pleomelarrosus sp. nov., and A. debbiae sp. nov. Six species previously assigned to Orthostolus and the monotypic Cyrtostolus are moved to Apetasimus; Apetasimus guttatus comb. nov., Apetasimus sordidus comb. nov., Apetasimus expers comb. nov., Apetasimus atratus comb. nov., Apetasimus kauaiensis comb. nov., and Apetasimus subalatus comb. nov. Apetasimus are arranged in three species groups: pleomelarrosus-group, involucer-group, and guttatus-group. The involucer-group is characterized by brachyptery, and are rarely collected. The pleomelarrosus-group is fully winged and one species, A. pleomelarrosus, is locally abundant on Kauai. One member of the guttatus-group, A. subalatus, is brachypterous. All guttatus-group species are presumed extinct, with the last known collection in 1935.


Zootaxa ◽  
2012 ◽  
Vol 3365 (1) ◽  
pp. 1 ◽  
Author(s):  
FRANCISCO HITA GARCIA ◽  
BRIAN L. FISHER

The taxonomy of the T. bessonii, T. bonibony, T. dysalum, T. marginatum, T. tsingy, and T. weitzeckeri species groups isrevised. A total of 33 species is treated, of which 27 are newly described and one is raised to species status. The T.weitzeckeri group contains the single species T. humbloti Forel, which is of Afrotropical origin and the only representativeof the group in the Malagasy region. The species T. bessonii Forel, T. dysalum Bolton, T. marginatum Forel, and T. stein-heili Forel, which were originally members of the T. weitzeckeri group, are now placed in other groups. Tetramorium bes-sonii is the core species of the T. bessonii group, which also contains the four newly described species T. artemis sp. n., T.malagasy sp. n., T. ryanphelanae sp. n., T. wardi sp. n., and T. orientale Forel stat. n., which was a junior synonym of T.bessonii but is now raised to species rank. The T. dysalum group is a moderately-sized group with ten species, of whichonly T. dysalum and T. steinheili were previously known; the other eight species are all newly described. The newly described species in this group are: T. ambatovy sp. n., T. macki sp. n., T. mallenseana sp. n., T. orc sp. n., T. robitika sp. n.,T. sargina sp. n., T. yammer sp. n., and T. vohitra sp. n. A lectotype and several paralectotypes of T. steinheili are desig-nated. Tetramorium marginatum is the central species of the T. marginatum group, which also includes the five newly de-scribed species T. valky sp. n., T. hector sp. n., T. norvigi sp. n., T. shamshir sp. n., and T. silvicola sp. n. The T. bonibonyand T. tsingy groups represent completely new groups that consist entirely of previously unknown, undescribed species.The first group holds the new species T. bonibony sp. n., T. kali sp. n., T. sada sp. n., T. nosybe sp. n., T. olana sp. n., T.popell sp. n., and T. trafo sp. n. and T. vony sp. n. The last group, the T. tsingy group, only contains the two species T. tyrionsp. n. and T. tsingy sp. n., both among the rarest Tetramorium species in Madagascar. All groups are fully revised withillustrated species-level identification keys, and all species are described/re-described and illustrated with high qualitymontage images. In addition, the current status of the Malagasy Tetramorium species groups is discussed and further modifications are proposed.


2011 ◽  
Vol 78 (1) ◽  
pp. 194-203 ◽  
Author(s):  
M. V. Sizova ◽  
T. Hohmann ◽  
A. Hazen ◽  
B. J. Paster ◽  
S. R. Halem ◽  
...  

ABSTRACTA significant number of microorganisms from the human oral cavity remain uncultivated. This is a major impediment to the study of human health since some of the uncultivated species may be involved in a variety of systemic diseases. We used a range of innovations previously developed to cultivate microorganisms from the human oral cavity, focusing on anaerobic species. These innovations include (i)in vivocultivation to specifically enrich for species actively growing in the oral cavity (the “minitrap” method), (ii) single-cell long-term cultivation to minimize the effect of fast-growing microorganisms, and (iii) modifications of conventional enrichment techniques, using media that did not contain sugar, including glucose. To enable cultivation of obligate anaerobes, we maintained strict anaerobic conditions in most of our cultivation experiments. We report that, on a per cell basis, the most successful recovery was achieved using minitrap enrichment (11%), followed by single-cell cultivation (3%) and conventional plating (1%). Taxonomically, the richest collection was obtained using the single-cell cultivation method, followed by minitrap and conventional enrichment, comprising representatives of 13, 9, and 4 genera, respectively. Interestingly, no single species was isolated by all three methods, indicating method complementarity. An important result is the isolation and maintenance in pure culture of 10 strains previously only known by their molecular signatures, as well as representatives of what are likely to be three new microbial genera. We conclude that the ensemble of new methods we introduced will likely help close the gap between cultivated and uncultivated species from the human oral cavity.


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