Effects of intraspecific cooperative interactions in large ecosystems

We analyze the role of the Allee effect - a positive correlation between population density and mean individual fitness - for ecological communities formed by a large number of species. Our study is performed using the generalized Lotka-Volterra model with random interactions between species. We obtain the phase diagram and analyze the nature of the multiple equilibria phase. Remarkable differences emerge with respect to the logistic growth case, thus revealing the major role played by the functional response in determining aggregate behaviors of large ecosystems.

Can Status Inequality Organize Cooperation in Multi-leader Systems? An Evolutionary Theory

Status hierarchies often emerge in small collective task groups. In these groups, clearly defined hierarchies facilitate and stabilize structured cooperative interactions among group members, supporting their evolutionary function in the real world. What the existing research in this field has failed to consider, however, is that cooperation matters in these hierarchies with clear status inequality, as well as in other more realistic, multiple-leader groups with less clear hierarchies. Multi-leadership is ubiquitous but, by definition, flattens status inequality and may, in turn, jeopardize its capacity to sustain cooperation. Leveraging the relationship between multi-leadership and cooperation, our evolutionary game model reveals that hierarchies, in general, promote cooperation in groups with multiple leaders, but these hierarchies only do that up to a point, after which multi-leadership backfires. Accordingly, the model provides not only a theoretical account for how multi-leadership coexists with cooperation but also the conditions under which the coexistence would break.

Molecular Mechanisms of Staphylococcus and Pseudomonas Interactions in Cystic Fibrosis

Cystic fibrosis (CF) is an autosomal recessive genetic disorder that is characterized by recurrent and chronic infections of the lung predominantly by the opportunistic pathogens, Gram-positive Staphylococcus aureus and Gram-negative Pseudomonas aeruginosa. While S. aureus is the main colonizing bacteria of the CF lungs during infancy and early childhood, its incidence declines thereafter and infections by P. aeruginosa become more prominent with increasing age. The competitive and cooperative interactions exhibited by these two pathogens influence their survival, antibiotic susceptibility, persistence and, consequently the disease progression. For instance, P. aeruginosa secretes small respiratory inhibitors like hydrogen cyanide, pyocyanin and quinoline N-oxides that block the electron transport pathway and suppress the growth of S. aureus. However, S. aureus survives this respiratory attack by adapting to respiration-defective small colony variant (SCV) phenotype. SCVs cause persistent and recurrent infections and are also resistant to antibiotics, especially aminoglycosides, antifolate antibiotics, and to host antimicrobial peptides such as LL-37, human β-defensin (HBD) 2 and HBD3; and lactoferricin B. The interaction between P. aeruginosa and S. aureus is multifaceted. In mucoid P. aeruginosa strains, siderophores and rhamnolipids are downregulated thus enhancing the survival of S. aureus. Conversely, protein A from S. aureus inhibits P. aeruginosa biofilm formation while protecting both P. aeruginosa and S. aureus from phagocytosis by neutrophils. This review attempts to summarize the current understanding of the molecular mechanisms that drive the competitive and cooperative interactions between S. aureus and P. aeruginosa in the CF lungs that could influence the disease outcome.

The face never lies: facial expressions and mimicry modulate playful interactions in wild geladas

Play fighting, the most common form of social play in mammals, is a fertile field to investigate the use of visual signals in animals’ communication systems. Visual signals can be exclusively emitted during play (e.g. play faces, PF, context-dependent signals), or they can be released under several behavioural domains (e.g. lip-smacking, LS, context-independent signals). Rapid facial mimicry (RFM) is the involuntary rapid facial congruent response produced after perceiving others’ facial expressions. RFM leads to behavioural and emotional synchronisation that often translates into the most balanced and longest playful interactions. Here, we investigate the role of playful communicative signals in geladas (Theropithecus gelada). We analysed the role of PF and LS produced by wild immature geladas during play fighting. We found that PFs, but not LS, were particularly frequent during the riskiest interactions such as those including individuals from different groups. Furthermore, we found that RFM (PF→PF) was highest when playful offensive patterns were not biased towards one of the players and when the session was punctuated by LS. Under this perspective, the presence of context-independent signals such as LS may be useful in creating an affiliative mood that enhances communication and facilitates most cooperative interactions. Indeed, we found that sessions punctuated by the highest frequency of RFM and LS were also the longest ones. Whether the complementary use of PF and LS is strategically guided by the audience or is the result of the emotional arousal experienced by players remains to be investigated. Significance Statement Facial expressions and their rapid replication by an observer are fundamental communicative tools during social contacts in human and non-human animals. Play fighting is one of the most complex forms of social interactions that can easily lead to misunderstanding if not modulated through an accurate use of social signals. Wild immature geladas are able to manage their play sessions thus limiting the risk of aggressive escalation. While playing with unfamiliar subjects belonging to other groups, they make use of a high number of play faces. Moreover, geladas frequently replicate others’ play faces and emit facial expressions of positive intent (i.e. lip-smacking) when engaging in well-balanced long play sessions. In this perspective, this “playful facial chattering” creates an affiliative mood that enhances communication and facilitates most cooperative interactions.

Metal-Hydrogen-Pi-Bonded Organic Frameworks

We report the synthesis and characterization of a new series of permanently porous, three-dimensional metal-organic frameworks (MOFs), M-HAF-2 (M= Fe, Ga or In), constructed from tetratopic, hydroxamate-based, chelating linkers. The structure of M-HAF-2 was determined by three-dimensional electron diffraction (3DED), revealing a unique interpenetrated hcb-a net topology. This unusual topology is enabled by the presence of free hydroxamate groups, which lead to the formation of a diverse network of cooperative interactions comprising single metal-hydroxamate nodes, staggered π–π interactions between linkers and H-bonding interactions between metal-coordinated and free hydroxamate groups. Such extensive, multimodal interconnectivity is reminiscent of the complex noncovalent interaction networks of proteins and endows M-HAF-2 frameworks with good thermal and exceptionally high chemical stability and allows them to readily undergo post-synthetic metal exchange (PSE). We demonstrate that M-HAF-2 can serve as versatile porous materials for ionic separations, likely aided by one-dimensional channels lined by continuously π-stacked aromatic groups and H-bonding hydroxamate functionalities. As a new addition to the small group of hydroxamate-based MOFs, M-HAF-2 represents a structural merger between MOFs and hydrogen-bonded organic frameworks (HOFs).

Dopamine enhances model-free credit assignment through boosting of retrospective model-based inference

Dopamine is implicated in representing model-free (MF) reward prediction errors a as well as influencing model-based (MB) credit assignment and choice. Putative cooperative interactions between MB and MF systems include a guidance of MF credit assignment by MB inference. Here, we used a double-blind, placebo-controlled, within-subjects design to test an hypothesis that enhancing dopamine levels boosts the guidance of MF credit assignment by MB inference. In line with this, we found that levodopa enhanced guidance of MF credit assignment by MB inference, without impacting MF and MB influences directly. This drug effect correlated negatively with a dopamine-dependent change in purely MB credit assignment, possibly reflecting a trade-off between these two MB components of behavioural control. Our findings of a dopamine boost in MB inference guidance of MF learning highlights a novel DA influence on MB-MF cooperative interactions.

The evolution of cheating in viruses

The success of many viruses depends upon cooperative interactions between viral genomes. However, whenever cooperation occurs, there is the potential for ‘cheats’ to exploit that cooperation. We suggest that: (1) the biology of viruses makes viral cooperation particularly susceptible to cheating; (2) cheats are common across a wide range of viruses, including viral entities that are already well studied, such as defective interfering genomes, and satellite viruses. Consequently, the evolutionary theory of cheating could help us understand and manipulate viral dynamics, while viruses also offer new opportunities to study the evolution of cheating.

The role of competition versus cooperation in microbial community coalescence

New microbial communities often arise through the mixing of two or more separately assembled parent communities, a phenomenon that has been termed “community coalescence”. Understanding how the interaction structures of complex parent communities determine the outcomes of coalescence events is an important challenge. While recent work has begun to elucidate the role of competition in coalescence, that of cooperation, a key interaction type commonly seen in microbial communities, is still largely unknown. Here, using a general consumer-resource model, we study the combined effects of competitive and cooperative interactions on the outcomes of coalescence events. To do so, we simulate coalescence events between pairs of communities with different degrees of competition for shared carbon resources and cooperation through cross-feeding on leaked metabolic by-products (facilitation). We also study how structural and functional properties of post-coalescence communities evolve when they are subjected to repeated coalescence events. We find that in coalescence events, the less competitive and more cooperative parent communities contribute a higher proportion of species to the new community because this endows superior ability to deplete resources and resist invasions. Consequently, when a community is subjected to repeated coalescence events, it gradually evolves towards being less competitive and more cooperative, as well as more speciose, robust and efficient in resource use. Encounters between microbial communities are becoming increasingly frequent as a result of anthropogenic environmental change, and there is great interest in how the coalescence of microbial communities affects environmental and human health. Our study provides new insights into the mechanisms behind microbial community coalescence, and a framework to predict outcomes based on the interaction structures of parent communities.

Scaffolding protein CcmM directs multiprotein phase separation in β-carboxysome biogenesis

Carboxysomes in cyanobacteria enclose the enzymes Rubisco and carbonic anhydrase to optimize photosynthetic carbon fixation. Understanding carboxysome assembly has implications in agricultural biotechnology. Here we analyzed the role of the scaffolding protein CcmM of the β-cyanobacterium Synechococcus elongatus PCC 7942 in sequestrating the hexadecameric Rubisco and the tetrameric carbonic anhydrase, CcaA. We find that the trimeric CcmM, consisting of γCAL oligomerization domains and linked small subunit-like (SSUL) modules, plays a central role in mediation of pre-carboxysome condensate formation through multivalent, cooperative interactions. The γCAL domains interact with the C-terminal tails of the CcaA subunits and additionally mediate a head-to-head association of CcmM trimers. Interestingly, SSUL modules, besides their known function in recruiting Rubisco, also participate in intermolecular interactions with the γCAL domains, providing further valency for network formation. Our findings reveal the mechanism by which CcmM functions as a central organizer of the pre-carboxysome multiprotein matrix, concentrating the core components Rubisco and CcaA before β-carboxysome shell formation.