scholarly journals Stable Isotope Tracing In Vivo Reveals A Metabolic Bridge Linking The Microbiota To Host Histone Acetylation

2021 ◽  
Author(s):  
Peder J Lund ◽  
Leah A Gates ◽  
Marylene Leboeuf ◽  
Sarah A Smith ◽  
Lillian Chau ◽  
...  

The gut microbiota influences host epigenetics by fermenting dietary fiber into butyrate. Although butyrate could promote histone acetylation by inhibiting histone deacetylases, it may also undergo oxidation to acetyl-CoA, a necessary cofactor for histone acetyltransferases. Here, we find that epithelial cells from germ-free mice harbor a loss of histone H4 acetylation across the genome except at promoter regions. Using stable isotope tracing in vivo with 13C-labeled fiber, we demonstrate that the microbiota supplies carbon for histone acetylation. Subsequent metabolomic profiling revealed hundreds of labeled molecules and supported a microbial contribution to host fatty acid metabolism, which declined in response to colitis and correlated with reduced expression of genes involved in fatty acid oxidation. These results illuminate the flow of carbon from the diet to the host via the microbiota, disruptions to which may affect energy homeostasis in the distal gut and contribute to the development of colitis.

2008 ◽  
Vol 413 (1) ◽  
pp. 143-150 ◽  
Author(s):  
Dennis Wegener ◽  
Christian Hildmann ◽  
Daniel Riester ◽  
Andreas Schober ◽  
Franz-Josef Meyer-Almes ◽  
...  

HDACs (histone deacetylases) are considered to be among the most important enzymes that regulate gene expression in eukaryotic cells. In general, increased levels of histone acetylation are associated with increased transcriptional activity, whereas decreased levels are linked to repression of gene expression. HDACs associate with a number of cellular oncogenes and tumour-suppressor genes, leading to an aberrant recruitment of HDAC activity, which results in changes of gene expression, impaired differentiation and excessive proliferation of tumour cells. Therefore HDAC inhibitors are efficient anti-proliferative agents in both in vitro and in vivo pre-clinical models of cancer, making them promising anticancer therapeutics. In the present paper, we present the results of a medium-throughput screening programme aiming at the identification of novel HDAC inhibitors using HDAH (HDAC-like amidohydrolase) from Bordetella or Alcaligenes strain FB188 as a model enzyme. Within a library of 3719 compounds, several new classes of HDAC inhibitor were identified. Among these hit compounds, there were also potent inhibitors of eukaryotic HDACs, as demonstrated by an increase in histone H4 acetylation, accompanied by a decrease in tumour cell metabolism in both SHEP neuroblastoma and T24 bladder carcinoma cells. In conclusion, screening of a compound library using FB188 HDAH as model enzyme identified several promising new lead structures for further development.


Blood ◽  
2014 ◽  
Vol 124 (21) ◽  
pp. 536-536 ◽  
Author(s):  
Nathan Mathewson ◽  
Anna Mathew ◽  
Katherine Oravecz-Wilson ◽  
Julia Wu ◽  
Tomomi Toubai ◽  
...  

Abstract Alterations in the gastrointestinal (GI) microbiota have recently been implicated in the severity of graft versus host disease (GVHD). While most studies are focused on annotating the distinct microbial taxonomic compositions and/or the recognition of bacterial molecules by the immune system, little is known about the microbial metabolite composition (crucial for achieving the effects of the microbiota) on the GI epithelium and immune responses after allogeneic BMT. In order to profile the microbial metabolite composition in an unbiased way following allogeneic BMT, weutilized a clinically relevant MHC disparate (B6→BALB/c) model of GVHD and determined the metabolites by performing gas chromatography-mass spectrometry (GC-MS/MS) in a blinded manner. The syngeneic (BALB/c→BALB/c) animals and the naive untransplanted, age-matched BALB/c animals treated with similar diet, served as controls. We made the surprising observation that on day +7 (relative to transplant) there were no statistically significant differences in either the luminal contents of the small bowel or large bowel or in the plasma and spleens of the allogeneic animals when compared to the control animals. However, the short chain fatty acids (SCFA) derived from the microbiota, specifically butyrate, was significantly less only in the intestinal epithelial cells (IECs) of allo-recipients (P<0.03). These surprising results were validated by repeating the unbiased profiling studies on day +21. Additionally, the IECs (CD326+) harvested from the allo-animals on day +7 demonstrated reduced expression of SLC5A8 and GPR43 (P<0.015), which were recently recognized as receptors for butyrate. Because butyrate is known to inhibit histone deacetylases and alter the epigenome through histone acetylation, we next hypothesized that reduced butyrate levels within the IECs would affect the IEC histone acetylation. Consistent with the hypothesis, the (CD326+) IECs from the allo-recipients demonstrated significantly reduced histone H4-acetylation (P<0.02) on day +7. To determine whether butyrate has any direct functional effects, we harvested primary IECs from B6 animals, incubated them with butyrate, and next used them as targets in a cytotoxic assay with allo-stimulated BALB/c CD8+ T cells. Pretreatment of IECs with butyrate, enhanced their histone acetylation and their ability to resist apoptosis (P<0.04) induced by the allo-T cells, demonstrating direct functional relevance of butyrate on IECs. Next, to determine the potential in vivo relevance of reduced butyrate in IECs, and to determine if diminished butyrate absorption could be overcome in vivo, we administered butyrate (10mg/kg) daily from day 0 through 21 to the recipients of a B6→BALB/c model BMT. Intra-gastric administration of butyrate to allo-recipients significantly enhanced the acetylation of histone-H4 (P<0.003). Importantly, examination of the IECs on day +7 post-BMT with transmission electron microscopy (TEM), demonstrated significantly improved junction integrity in allo-recipients treated with butyrate (Fig. 1C), compared to vehicle treated controls (Fig. 1B) demonstrating direct effects on preservation of GI epithelial integrity. Further, immunophenotype analyses of the donor T cells in the GI tract and the spleen on day +7 and +21 demonstrated a significant decrease in the total number of activated donor T cells (CD4+CD69+ & CD4+CD44hi) and an increase in the ratio of donor T regulatory cells (FoxP3+/CD44hi+) only on day +21 and not day +7, suggesting that this could be an indirect consequence of the reduction of IEC damage by butyrate observed at earlier time-point, day +7. Consistent with these observations, butyrate treatment resulted in the increased survival of the allogeneic animals (P<0.04). Similar protection from GVHD was also observed in a second, B6→B6D2F1 model of BMT demonstrating strain independent effects. Collectively our results demonstrate for the first time that (a) alterations of microbial metabolites, specifically the SCFAs that have direct and profound effects on the GVHD target tissue, GI epithelium and (b) suggest that enhancing the local microbial metabolite, butyrate, could be a potential novel strategy for mitigating GVHD. Figure 1 Figure 1. Disclosures No relevant conflicts of interest to declare.


2021 ◽  
pp. 101294
Author(s):  
Manuel Grima-Reyes ◽  
Adriana Martinez-Turtos ◽  
Ifat Abramovich ◽  
Eyal Gottlieb ◽  
Johanna Chiche ◽  
...  

2020 ◽  
Vol 22 (Supplement_2) ◽  
pp. ii19-ii19
Author(s):  
Anca Mihalas ◽  
Heather Feldman ◽  
Anoop Patel ◽  
Patrick Paddison

Abstract Current standard of care therapy for glioblastoma (GBM) includes cytoreduction followed by ablative therapies that target rapidly dividing cell types. However, the presence of quiescent-like/G0 states, therefore, represents a natural reservoir of tumor cells that are resistant to current treatments. Quiescence or G0 phase is a reversible state of “stasis” cells enter in response to developmental or environmental cues. To gain insight into how glioblastoma cells might regulate G0-like states, we performed a genome-wide CRISPR-Cas9 screen in patient-derived GBM stem-like cells (GSCs) harboring a G0-reporter to identify genes that when inhibited trap GSCs in G0-like states. Among the top screen hits were members of the Tip60/KAT5 histone acetyltransferase complex, which targets both histones (e.g., H4) and non-histone proteins for acetylation. NuA4 functions as a transcriptional activator, whose activities are coordinated with MYC in certain contexts, and also participates in DNA double-strand break repair by facilitating chromatin opening. However, currently little is known about the roles for NuA4 complex in GBM biology. Through modeling KAT5 function in GSC in vitro cultures and in vivo tumors, we find that KAT5 inhibition causes cells to arrest in a G0-like state with high p27 levels, G1-phase DNA content, low protein synthesis rates, low rRNA rates, lower metabolic rate, suppression of cell cycle gene expression, and low histone H4 acetylation. Interestingly, partial inhibition of KAT5 activity slows highly aggressive tumor growth, while increasing p27hi H4-aclow populations. Remarkably, we that low grade gliomas have significantly higher H4-aclow subpopulations and generally lower H4-ac levels than aggressive grade IV tumors. Taken together, our results suggest that NuA4/KAT5 activity may play a key role in quiescence ingress/egress in glioma and that targeting its activity in high grade tumors may effectively “down grade” them, thus, increase patient survival.


2021 ◽  
Author(s):  
Brandon Faubert ◽  
Alpaslan Tasdogan ◽  
Sean J. Morrison ◽  
Thomas P. Mathews ◽  
Ralph J. DeBerardinis

2021 ◽  
Author(s):  
Rory P. Cunningham ◽  
Mary P. Moore ◽  
Ryan J. Daskek ◽  
Grace M. Meers ◽  
Takamune Takahashi ◽  
...  

Regulation of endothelial nitric oxide synthase (eNOS) in hepatocytes may be an important target in nonalcoholic fatty liver disease (NAFLD) development and progression to steatohepatitis (NASH). In this study, we show genetic deletion and viral knockdown of hepatocyte-specific eNOS exacerbated hepatic steatosis and inflammation, decreased hepatic mitochondrial fatty acid oxidation and respiration, increased mitochondrial H<sub>2</sub>O<sub>2</sub> emission, and impaired the hepatic mitophagic (BNIP3 and LC3II) response. Conversely, overexpressing eNOS in hepatocytes in vitro and in vivo increased hepatocyte mitochondrial respiration and attenuated western diet induced NASH. Moreover, patients with elevated NAFLD activity score (histology score of worsening steatosis, hepatocyte ballooning, and inflammation) exhibited reduced hepatic eNOS expression which correlated with reduced hepatic mitochondrial fatty acid oxidation and lower hepatic protein expression of mitophagy protein BNIP3. The current study reveals an important molecular role for hepatocyte-specific eNOS as a key regulator of NAFLD/NASH susceptibility and mitochondrial quality control with direct clinical correlation to patients with NASH.


2012 ◽  
Vol 26 (S1) ◽  
Author(s):  
YEOJIN PARK ◽  
Elly Ok ◽  
Hyo Jung Lee ◽  
Ji Yeon Kim ◽  
Mi Kyung Kim ◽  
...  

2009 ◽  
Vol 44 (2) ◽  
pp. 87-97 ◽  
Author(s):  
Chung Thong Lim ◽  
Blerina Kola ◽  
Márta Korbonits

AMP-activated protein kinase (AMPK) is a key molecular player in energy homeostasis at both cellular and whole-body levels. AMPK has been shown to mediate the metabolic effects of hormones such as leptin, ghrelin, adiponectin, glucocorticoids and insulin as well as cannabinoids. Generally, activated AMPK stimulates catabolic pathways (glycolysis, fatty acid oxidation and mitochondrial biogenesis) and inhibits anabolic pathways (gluconeogenesis, glycogen, fatty acid and protein synthesis), and has a direct appetite-regulating effect in the hypothalamus. Drugs that activate AMPK, namely metformin and thiazolidinediones, are often used to treat metabolic disorders. Thus, AMPK is now recognised as a potential target for the treatment of obesity and associated co-morbidities.


Sign in / Sign up

Export Citation Format

Share Document