scholarly journals Mitigating isolation: The use of rapid antigen testing to reduce the impact of self-isolation periods

Author(s):  
Declan Bays ◽  
Timothy Whiteley ◽  
Matt Pindar ◽  
Johnathon Taylor ◽  
Brodie F Walker ◽  
...  

Isolating, either enforced or self-guided, is a well-recognised and used technique in the limitation and reduction of disease spread. This usually balances the societal harm of disease transmission against the individual harm of being isolated and is typically limited to a very small number of individuals. With the widespread transmission of SARS-CoV-2 and requirements to self-isolate when symptomatic or having tested positive, the number of people affected has grown very large causing noticeable individual cost, and disruption to the provision of essential services. With widespread access to reliable rapid antigen tests (also known as LFD or LFTs), in this paper we examine strategies to utilise this testing technology to limit the individual harm whist maintaining the protective effect of isolation. We extend this work to examine how isolation may be improved and mitigate the release of infective individuals into the population caused by fixed time-periods.

2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Emily Joanne Nixon ◽  
Ellen Brooks-Pollock ◽  
Richard Wall

Abstract Background Ovine psoroptic mange (sheep scab) is a highly pathogenic contagious infection caused by the mite Psoroptes ovis. Following 21 years in which scab was eradicated in the UK, it was inadvertently reintroduced in 1972 and, despite the implementation of a range of control methods, its prevalence increased steadily thereafter. Recent reports of resistance to macrocyclic lactone treatments may further exacerbate control problems. A better understanding of the factors that facilitate its transmission are required to allow improved management of this disease. Transmission of infection occurs within and between contiguous sheep farms via infected sheep-to-sheep or sheep–environment contact and through long-distance movements of infected sheep, such as through markets. Methods A stochastic metapopulation model was used to investigate the impact of different transmission routes on the spatial pattern of outbreaks. A range of model scenarios were considered following the initial infection of a cluster of highly connected contiguous farms. Results Scab spreads between clusters of neighbouring contiguous farms after introduction but when long-distance movements are excluded, infection then self-limits spatially at boundaries where farm connectivity is low. Inclusion of long-distance movements is required to generate the national patterns of disease spread observed. Conclusions Preventing the movement of scab infested sheep through sales and markets is essential for any national management programme. If effective movement control can be implemented, regional control in geographic areas where farm densities are high would allow more focussed cost-effective scab management. Graphical Abstract


2017 ◽  
Vol 6 (2) ◽  
pp. 147
Author(s):  
Yavich Roman ◽  
Alexander Gein ◽  
Alexandra Gerkerova

Nowadays pedagogical testing technology has become the basic tool for diagnosis and assessment of the level of students’ mastery of learning material. Primarily they allow testing the acquired knowledge and skills in their use as a technology of the definite types of problems solution. Thus, the level of logical reasoning development plays a significant role in the successful mastery of many subjects (mathematical courses in particular). So, the problem of objective and measurable criteria for assessing the impact of the level of logical reasoning on the mastery of mathematical subjects is of current concern. We have studied the scientific sources that describe the testing technologies use for assessment of academic achievement as well as the level of logical reasoning development. We have found that the existing methods are based only on the individual work of the teacher with a student and don’t suggest any diagnosing technology. The goal of our research is to prove the effectiveness of our method as compared to the traditional one.


2018 ◽  
Vol 10 (1) ◽  
Author(s):  
Sultanah Alshammari ◽  
Armin Mikler

ObjectiveTo develop a computational model to assess the risk of epidemics in global mass gatherings and evaluate the impact of various measures of prevention and control of infectious diseases.IntroductionGlobal Mass gatherings (MGs) such as Olympic Games, FIFA World Cup, and Hajj (Muslim pilgrimage to Makkah), attract millions of people from different countries. The gathering of a large population in a proximity facilitates transmission of infectious diseases [1]. Attendees arrive from different geographical areas with diverse disease history and immune responses. The associated travel patterns with global events can contribute to a further disease spread affecting a large number of people within a short period and lead to a potential pandemic. Global MGs pose serious health threats and challenges to the hosting countries and home countries of the participants [2]. Advanced planning and disease surveillance systems are required to control health risks in these events. The success of computational models in different areas of public health and epidemiology motivates using these models in MGs to study transmission of infectious diseases and assess the risk of epidemics. Computational models enable simulation and analysis of different disease transmission scenarios in global MGs. Epidemic models can be used to evaluate the impact of various measures of prevention and control of infectious diseases.MethodsThe annual event of the Hajj is selected to illustrate the main aspects of the proposed model and to address the associated challenges. Every year, more than two million pilgrims from over 186 countries arrive in Makkah to perform Hajj with the majority arriving by air. Foreign pilgrims can stay at one of the holy cities of Makkah and Madinah up to 30-35 days prior the starting date of the Hajj. The long duration of the arrival phase of the Hajj allows a potential epidemic to proceed in the population of international pilgrims. Stochastic SEIR (Susceptible−Exposed−Infected−Recovered) agent-based model is developed to simulate the disease transmission among pilgrims. The agent-based model is used to simulate pilgrims and their interactions during the various phases of the Hajj. Each agent represents a pilgrim and maintains a record of demographic data (gender, country of origin, age), health data (infectivity, susceptibility, number of days being exposed or infected), event related data (location, arrival date and time), and precautionary or health-related behaviors.Each pilgrim can be either healthy but susceptible to a disease, exposed who are infected but cannot transmit the infection, or infectious (asymptomatic or symptomatic) who are infected and can transmit the disease to other susceptibles. Exposed individuals transfer to the infectious compartment after 1/α days, and infectious individuals will recover and gain immunity to that disease after 1/γ days. Where α is the latent period and γ is the infectious period. Moving susceptible individuals to exposed compartment depends on a successful disease transmission given a contact with an infectious individual. The disease transmission rate is determined by the contact rate and thetransmission probability per contact. Contact rate and mixing patterns are defined by probabilistic weights based on the features of infectious pilgrims and the duration and setting of the stage where contacts are taking place. The initial infections are seeded in the population using two scenarios (Figure 1) to measure the effects of changing, the timing for introducing a disease into the population and the likelihood that a particular flight will arrive with one or more infected individuals.ResultsThe results showed that the number of initial infections is influenced by increasing the value of λ and selecting starting date within peak arrival days. When starting from the first day, the average size of the initial infectious ranges from 0.05% to 1% of the total arriving pilgrims. Using the SEIR agent-based model, a simulation of the H1N1 Influenza epidemic was completed for the 35-days arrival stage of the Hajj. The epidemic is initiated with one infectious pilgrim per flight resulting in infected 0.5% of the total arriving pilgrims. As pilgrims spend few hours at the airport, the results obtained from running the epidemic model showed only new cases of susceptible individuals entering the exposed state in a range of 0.20% to 0.35% of total susceptibles. The number of new cases is reduced by almost the same rate of the number of infectious individuals following precautionary behaviors.ConclusionsA data-driven stochastic SEIR agent-based model is developed to simulate disease spread at global mass gatherings. The proposed model can provide initial indicators of infectious disease epidemic at these events and evaluate the possible effects of intervention measures and health-related behaviors. The proposed model can be generalized to model the spread of various diseases in different mass gatherings, as it allows different factors to vary and entered as parameters.References1. Memish ZA, Stephens GM, Steffen R, Ahmed QA. Emergence of medicine for mass gatherings: lessons from the Hajj. The Lancet infectious diseases. 2012 Jan 31;12(1):56-65.2. Chowell G, Nishiura H, Viboud C. Modeling rapidly disseminating infectious disease during mass gatherings. BMC medicine. 2012 Dec 7;10(1):159.


2015 ◽  
Author(s):  
◽  
Rebecca Shattuck Lander

Epidemics have played a role in shaping human experiences of conflict among both soldiers and civilians. Prisoners of war, displaced populations, and confined refugees have experienced, and continue to experience, outbreaks of infectious disease, which are exacerbated by physical, environmental, and psychological stressors. Observations of epidemics at the global, regional, or national level are not always able to provide a complete picture of the unique health challenges of these wartime populations. This research develops and applies a computer simulation model to examine the way human behaviors, and the impact of those behaviors on the environment, can impact the way diarrheal diseases develop and spread in confined high-density living situations. This simulation was tested against the recorded death and sickness patterns for a dysentery outbreak at Camp Douglas, Illinois, a 19th Century Civil War prison camp. The agent-based simulation used in this research is a unique approach, and is based on the feedback relationship between human movement and behavior and the resulting contamination of physical spaces with infectious material, rather than direct person-to-person pathogen transmission. The results of this simulation suggests that modeling disease transmission based on environmental result in distinct epidemic dynamics. The results of this research emphasize the importance of examining the relationship between humans, their environment, and patterns of health and disease. Additionally, it highlights the way that model design can help to increase knowledge of how even limited movement and interaction options available to confined individuals can lead to significant differences in patterns of disease spread and epidemic development, which can help to better design public health interventions targeted at confined populations.


2020 ◽  
Author(s):  
Buse Eylul Oruc ◽  
Arden Baxter ◽  
Pinar Keskinocak ◽  
John Asplund ◽  
Nicoleta Serban

Abstract Background. Recent research has been conducted by various countries and regions on the impact of non-pharmaceutical interventions (NPIs) on reducing the spread of COVID19. This study evaluates the tradeoffs between potential benefits (e.g., reduction in infection spread and deaths) of NPIs for COVID19 and being homebound (i.e., refraining from interactions outside of the household).Methods. An agent-based simulation model, which captures the natural history of the disease at the individual level, and the infection spread via a contact network assuming heterogeneous population mixing in households, peer groups (workplaces, schools), and communities, is adapted to project the disease spread and estimate the number of homebound people and person-days under multiple scenarios, including combinations of shelter-in-place, voluntary quarantine, and school closure in Georgia from March 1 to September 1, 2020.Results. Compared to no intervention, under voluntary quarantine, voluntary quarantine with school closure, and shelter-in-place with school closure scenarios 4.5, 23.1, and 200+ homebound adult-days were required to prevent one infection, with the maximum number of adults homebound on a given day in the range of 119K-248K, 465K-499K, 5,388K-5,389K, respectively. Compared to no intervention, school closure only reduced the percentage of the population infected by less than 16% while more than doubling the peak number of adults homebound.Conclusions. Voluntary quarantine combined with school closure significantly reduced the number of infections and deaths with a considerably smaller number of homebound person-days compared to shelter-in-place.


2020 ◽  
Vol 41 (S1) ◽  
pp. s220-s221
Author(s):  
Daniel Sewell ◽  
Samuel Justice ◽  
Amy Hahn ◽  
Sriram Pemmaraju ◽  
Alberto Segre ◽  
...  

Background: In the field of public health, network models are useful for understanding the spread of both information and infectious diseases. Collecting network data requires determining network boundaries (ie, the entities selected for data collection). These decisions, if not made carefully, have potential outsized downstream effects on study findings. In practice, collaboration and coordination between healthcare organizations are often dictated by historical or geopolitical boundaries (eg, state or county boundaries), which may distort the underlying network under study, and thereby affect the reliability and/or accuracy of the network model. Objective: We compared natural communities in a patient-sharing network with those induced by geopolitical boundaries. Methods: Using data from the Healthcare Cost and Utilization Project (HCUP), we constructed a patient-sharing network among hospitals in California, splitting the data into a training set and a holdout set. We performed edge-betweenness clustering on the training set, and with the holdout set, we compared the resulting partition with the partition by counties using modularity. We also clustered contiguous counties that might function more cohesively together than individually. We performed spatially constrained hierarchical clustering on the network constructed from total patient flow between pairs of counties. The results were again compared via modularity on the holdout set to the county partition. Lastly, we built an individual-based model (IBM) using HCUP and American Hospital Association data to perform epidemic simulations. For each of several counties, we implemented this model to estimate the proportion of patients infected over time. We then reran the individual-based model using the entire state while dividing the results into corresponding counties. Results: In total, 680,485 patients transferred between 374 hospitals in 55 counties from 2003 to 2011. The out-of-sample modularity for the edge-betweenness clustering partition was 464% higher than that of the county partition. Aggregating the counties into half as many contiguous clusters was 319% higher, and aggregating them into 6 clusters was 489% higher (Fig. 1). The epicurves from the individual-based model ranged from small to significant deviations between state versus county boundaries (Fig. 2) . Conclusions: Collecting network data using externally imposed boundaries may lead to inaccurate network models. For example, counties serve as a poor proxy for their underlying communities, resulting in poor overall disease spread simulation results when county boundaries are allowed to drive network construction. These issues should be considered when building coordination partnerships such as the Accountable Communities for Health.Funding: NoneDisclosures: None


2021 ◽  
Vol 13 (22) ◽  
pp. 12575
Author(s):  
Monika Podgórska ◽  
Grzegorz Łazarski

We studied the impact of secondary succession in xerothermic grasslands on a population of Pulsatilla patens, a species of European Community interest. We established two permanent plots with a high number of individuals of P. patens in a xerothermic grassland in Southern Poland. We compared two areas, the first in open grassland (plot A), and the second with overgrowing vegetation (plot B). We assessed the population structure as well as the individual traits of the species. The total abundance of P. patens in the open xerothermic grassland was five times higher than in the overgrowing xerothermic grassland. A randomly clustering distribution was noted only in plot A; in plot B a random type of distribution occurred. The density structure of the rosettes was higher in plot A. The mean number of leaves in rosettes of P. patens as well as dimensions of intermediate stems and leaves of the species is strongly correlated with habitat conditions. The shadowing caused by shrubs and trees and high weeds observed in the overgrowing xerothermic grassland negatively impacted on the number of individuals, distribution, structure and morphology of P. patens.


2021 ◽  
Vol 83 (12) ◽  
Author(s):  
Lydia Wren ◽  
Alex Best

AbstractSusceptible–Infected–Recovered (SIR) models have long formed the basis for exploring epidemiological dynamics in a range of contexts, including infectious disease spread in human populations. Classic SIR models take a mean-field assumption, such that a susceptible individual has an equal chance of catching the disease from any infected individual in the population. In reality, spatial and social structure will drive most instances of disease transmission. Here we explore the impacts of including spatial structure in a simple SIR model. We combine an approximate mathematical model (using a pair approximation) and stochastic simulations to consider the impact of increasingly local interactions on the epidemic. Our key development is to allow not just extremes of ‘local’ (neighbour-to-neighbour) or ‘global’ (random) transmission, but all points in between. We find that even medium degrees of local interactions produce epidemics highly similar to those with entirely global interactions, and only once interactions are predominantly local do epidemics become substantially lower and later. We also show how intervention strategies to impose local interactions on a population must be introduced early if significant impacts are to be seen.


2021 ◽  
Author(s):  
Tessa Swanson ◽  
Seth Guikema ◽  
James Bagian ◽  
Christopher Schemanske ◽  
Claire Payne

AbstractAs educational institutions begin a school year following a year and a half of disruption from the COVID-19 pandemic, risk analysis can help to support decision-making for resuming in-person instructional operation by providing estiamtes of the relative risk reduction due to different interventions. In particular, a simulation-based risk analysis approach enables scenario evaluation and comparison to guide decision making and action prioritization under uncertainty. We develop a simulation model to characterize the risks and uncertainties associated with infections resulting from aerosol exposure in in-person classes. We demonstrate this approach by applying it to model a semester of courses in a real college with approximately 11,000 students embedded within a larger university. To have practical impact, risk cannot focus on only infections as the end point of interest, we estimate the risks of infection, hospitalizations, and deaths of students and faculty in the college. We incorporate uncertainties in disease transmission, the impact of policies such as masking and facility interventions, and variables outside of the college’s control such as population-level disease and immunity prevalence. We show in our example application that universal use of masks that block 40% of aerosols and the installation of near-ceiling, fan-mounted UVC systems both have the potential to lead to substantial risk reductions and that these effects can be modeled at the individual room level. These results exemplify how such simulation-based risk analysis can inform decision making and prioritization under great uncertainty.


2011 ◽  
Vol 8 (63) ◽  
pp. 1510-1520 ◽  
Author(s):  
H. L. Mills ◽  
T. Cohen ◽  
C. Colijn

Individuals living with HIV experience a much higher risk of progression from latent M. tuberculosis infection to active tuberculosis (TB) disease relative to individuals with intact immune systems. A several-month daily course of a single drug during latent infection (i.e. isoniazid preventive therapy (IPT)) has proved in clinical trials to substantially reduce an HIV-infected individual's risk of TB disease. As a result of these findings and ongoing studies, the World Health Organization has produced strong guidelines for implementing IPT on a community-wide scale for individuals with HIV at risk of TB disease. To date, there has been limited use of IPT at a community-wide level. In this paper, we present a new co-network model for HIV and TB co-epidemics to address questions about how the population-level impact of community-wide IPT may differ from the individual-level impact of IPT offered to selected individuals. In particular, we examine how the effect of clustering of contacts within high-TB incidence communities may affect the rates of re-infection with TB and how this clustering modifies the expected population-level effects of IPT. We find that populations with clustering of respiratory contacts experience aggregation of TB cases and high numbers of re-infection events. While, encouragingly, the overall population-level effects of community-wide IPT appear to be sustained regardless of network structure, we find that in populations where these contacts are highly clustered, there is dramatic heterogeneity in the impact of IPT: in some sub-regions of these populations, TB is nearly eliminated, while in others, repeated re-infection almost completely undermines the effect of IPT. Our findings imply that as IPT programmes are brought to scale, we should expect local heterogeneity of effectiveness as a result of the complex patterns of disease transmission within communities.


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