Agar substrate

2007 ◽  
Vol 2007 (23) ◽  
pp. pdb.rec11218-pdb.rec11218
Keyword(s):  
Author(s):  
Zeinab Ghezelayagh ◽  
Naeimeh Sadat Abtahi ◽  
Sepideh Khodaverdi ◽  
Mojtaba Rezazadeh Valojerdi ◽  
Aboulfazl Mehdizadeh ◽  
...  

1976 ◽  
Vol 22 (2) ◽  
pp. 261-263 ◽  
Author(s):  
A Burlina ◽  
L Galzigna

Abstract We describe here a simple, time-saving method for separating alkaline phosphatases on cellulose acetate, with a parallel detection of serum protein pattern. The staining procedure is based on a coupling reaction between the reaction product of alpha-naphthol with Fast Red Violet LB. The enzymatic reaction is done by bringing the cellulose acetate strip containing the phosphatase band into contact with the surface of a solid agar/substrate mixture. The whole procedure requires 80 min. The method has some features in common with other recently proposed procedures but is more reproducible and rapid because of the choice of the reagents and an improved yield of the coupling step.


2015 ◽  
Vol 73 (3) ◽  
pp. 527-534 ◽  
Author(s):  
Xiaoling Wang ◽  
Mudong Hao ◽  
Guoqing Wang

Wrinkle morphology is a distinctive phenomenon observed in mature biofilms that are produced by a great number of bacteria. The wrinkle pattern depends on the mechanical properties of the agar substrate and the biofilm itself, governed by the extracellular matrix (ECM). Here we study the macroscopic structures and the evolution of Bacillus subtilis biofilm wrinkles using the commercial finite element software ABAQUS. A mechanical model and simulation are set up to analyze and evaluate bacteria biofilm's wrinkle characteristics. We uncover the wrinkle formation mechanism and enumerate the quantitative relationship between wrinkle structure and mechanical properties of biofilm and its substrate. Our work can be used to modify the wrinkle pattern and control the biofilm size.


2008 ◽  
Vol 190 (20) ◽  
pp. 6811-6816 ◽  
Author(s):  
Rion G. Taylor ◽  
Roy D. Welch

ABSTRACT We have characterized and quantified a form of bacterial chemotaxis that manifests only as an emergent property by measuring symmetry breaking in a swarm of Myxococcus xanthus exposed to a two-dimensional nutrient gradient from within an agar substrate. M. xanthus chemotaxis requires cell-cell contact and coordinated motility, as individual motile cells exhibit only nonvectorial movement in the presence of a nutrient gradient. Genes that specifically affect M. xanthus chemotaxis include at least 10 of the 53 that express enhancer binding proteins of the NtrC-like class, an indication that this behavior is controlled through transcription, most likely by a complex signal transduction network.


1984 ◽  
Vol 30 (12) ◽  
pp. 1522-1525 ◽  
Author(s):  
C. R. MacKenzie ◽  
R. E. Williams

A simple, rapid, and highly sensitive technique is described for the detection of endoglucanase and endoxylanase in isoelectric-focused gels. Agar substrate gels containing 0.1% carboxymethyl cellulose or xylan are prepared on GelBond® plastic film and placed in contact with an electrofocused gel containing the enzymes under study. Hydrolysis zones in substrate gels are visualized by staining with Congo red. As little as 1 ng of enzyme is detected in 5 min using this technique.


Nematology ◽  
2016 ◽  
Vol 18 (4) ◽  
pp. 403-415 ◽  
Author(s):  
Michael Ackermann ◽  
Paul Prill ◽  
Liliane Ruess

Interactions between bacteria and nematode grazers are an important component of soil food webs yet, due to the cryptic habitat, they are almost exclusively investigated in artificial agar substrate. Transport, food choice and foraging experiments were performed in a modular microcosm system with the nematode Acrobeloides buetschlii and bacterial diets (Escherichia coli, Pseudomonas putida and Bacillus subtilis) in gamma-irradiated soil. Bacterial biomass was assessed by soil phospholipid fatty acids (PLFAs). Continuous random foraging of nematodes was affected by soil type. Food choice experiments revealed diet switch and time lag preference responses, suggesting that nematode population fluctuations are driven by multiple factors such as bacterial attractants, defence strategies or food quality. Application of PLFA markers revealed a strong nematode predation pressure, as biomass in P. putida declined by 50%, whereas no transport of bacteria through soil was indicated. Overall, semi-natural experimental systems are an essential prerequisite to gain a realistic picture in microbial-microfaunal interactions.


1980 ◽  
Vol 58 (18) ◽  
pp. 1994-2000 ◽  
Author(s):  
J. F. Kollmorgen ◽  
E. J. Trione

Mating-type interactions between monokaryons (secondary sporidia and mycelia] of Tilletia caries were studied. Preconjugation pegs were produced by sporidia after displacement of stimulating (opposite mating type) cells and the pegs continued to elongate. Sporidia of opposite mating types conjugated when subjected to a treatment that would disrupt fimbrial connections. Multiple hyphal tips were produced by differentiating sporidia separated from monokaryons of opposite mating type. The response was sex specific. In some instances the factors causing these responses were apparently retained in the agar substrate.


1998 ◽  
Vol 64 (7) ◽  
pp. 2367-2373 ◽  
Author(s):  
Jacques-Olivier Thaler ◽  
Bernard Duvic ◽  
Alain Givaudan ◽  
Noël Boemare

ABSTRACT Xenorhabdus spp. and Photorhabdus spp., entomopathogenic bacteria symbiotically associated with nematodes of the families Steinernematidae and Heterorhabditidae, respectively, were shown to produce different lipases when they were grown on suitable nutrient agar. Substrate specificity studies showed thatPhotorhabdus spp. exhibited a broad lipase activity, while most of the Xenorhabdus spp. secreted a specific lecithinase. Xenorhabdus spp. occur spontaneously in two variants, phase I and phase II. Only the phase I variants ofXenorhabdus nematophilus and Xenorhabdus bovienii strains produced lecithinase activity when the bacteria were grown on a solid lecithin medium (0.01% lecithin nutrient agar; 24 h of growth). Five enzymatic isomers responsible for this activity were separated from the supernatant of a X. nematophilus F1 culture in two chromatographic steps, cation-exchange chromatography and C18 reverse-phase chromatography. The substrate specificity of the X. nematophilus F1 lecithinase suggested that a phospholipase C preferentially active on phosphatidylcholine could be isolated. The entomotoxic properties of each isomer were tested by injection into the hemocoels of insect larvae. None of the isomers exhibited toxicity with the insects tested, Locusta migratoria, Galleria mellonella, Spodoptera littoralis, and Manduca sexta. The possible role of lecithinase as either a virulence factor or a symbiotic factor is discussed.


1986 ◽  
Vol 18 (1) ◽  
pp. 47-49 ◽  
Author(s):  
P. Bubrick ◽  
Margalith Galun

AbstractAxenic, spore to spore resynthesis of Xanthoria parietina has been accomplished on an agar substrate.


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