scholarly journals Repeat peptide motifs which contain beta-turns and modulate DNA condensation in chromatin

1990 ◽  
Vol 191 (1) ◽  
pp. 19-26 ◽  
Author(s):  
Monique ERARD ◽  
Faouzi LAKHDAR-GHAZAL ◽  
Francois AMALRIC
2014 ◽  
Vol 10 (2) ◽  
pp. 185-188 ◽  
Author(s):  
Atsushi Maruyama ◽  
Naotaka Sonda ◽  
Kohei Yamasaki ◽  
Masanori Hirano ◽  
Satoru Kidoaki ◽  
...  

2021 ◽  
Vol 22 (3) ◽  
pp. 1364
Author(s):  
V. V. Krishnan ◽  
Timothy Bentley ◽  
Alina Xiong ◽  
Kalyani Maitra

Both nuclear magnetic resonance (NMR) and molecular dynamics (MD) simulations are routinely used in understanding the conformational space sampled by peptides in the solution state. To investigate the role of single-residue change in the ensemble of conformations sampled by a set of heptapeptides, AEVXEVG with X = L, F, A, or G, comprehensive NMR, and MD simulations were performed. The rationale for selecting the particular model peptides is based on the high variability in the occurrence of tri-peptide E*L between the transmembrane β-barrel (TMB) than in globular proteins. The ensemble of conformations sampled by E*L was compared between the three sets of ensembles derived from NMR spectroscopy, MD simulations with explicit solvent, and the random coil conformations. In addition to the estimation of global determinants such as the radius of gyration of a large sample of structures, the ensembles were analyzed using principal component analysis (PCA). In general, the results suggest that the -EVL- peptide indeed adopts a conformational preference that is distinctly different not only from a random distribution but also from other peptides studied here. The relatively straightforward approach presented herein could help understand the conformational preferences of small peptides in the solution state.


Author(s):  
Bernat Pi-Boleda ◽  
Sravani Ramisetty ◽  
Ona Illa ◽  
Vicenç Branchadell ◽  
Rita S. Dias ◽  
...  

2010 ◽  
Vol 104 (14) ◽  
Author(s):  
C. Herold ◽  
P. Schwille ◽  
E. P. Petrov

2018 ◽  
Vol 114 (3) ◽  
pp. 596a
Author(s):  
Chetan Poudel ◽  
Nathan Curry ◽  
Kevin A. Feeney ◽  
Gabriele S. Kaminski Schierle ◽  
Clemens F. Kaminski

2003 ◽  
Vol 23 (5) ◽  
pp. 1674-1687 ◽  
Author(s):  
Liang-Nian Song ◽  
Roger Herrell ◽  
Stephen Byers ◽  
Salimuddin Shah ◽  
Elizabeth M. Wilson ◽  
...  

ABSTRACT β-Catenin is a multifunctional molecule that is activated by signaling through WNT receptors. β-Catenin can also enhance the transcriptional activity of some steroid hormone receptors such as the androgen receptor and retinoic acid receptor α. Androgens can affect nuclear translocation of β-catenin and influence its subcellular distribution. Using mammalian two-hybrid binding assays, analysis of reporter gene transcription, and coimmunoprecipitation, we now show that β-catenin binds to the androgen receptor ligand-binding domain (LBD) and modulates the transcriptional effects of TIF2 and the androgen receptor N-terminal domain (NTD). In functional assays, β-catenin bound to androgen receptor only in the presence of ligand agonists, not antagonists. β-Catenin binding to the androgen receptor LBD was independent of and cooperative with the androgen receptor NTD and the p160 coactivator TIF2, both of which bind to the activation function 2 (AF-2) region of the androgen receptor. Different mutations of androgen receptor helix 3 amino acids disrupted binding of androgen receptor NTD and β-catenin. β-Catenin, androgen receptor NTD, and TIF2 binding to the androgen receptor LBD were affected similarly by a subset of helix 12 mutations, but disruption of two sites on helix 12 affected only binding of β-catenin and not of TIF2 or the androgen receptor NTD. Mutational disruption of each of five LXXLL peptide motifs in the β-catenin armadillo repeats did not disrupt either binding to androgen receptor or transcriptional coactivation. ICAT, an inhibitor of T-cell factor 4 (TCF-4), and E-cadherin binding to β-catenin also blocked binding of the androgen receptor LBD. We also demonstrated cross talk between the WNT and androgen receptor signaling pathways because excess androgen receptor could interfere with WNT signaling and excess TCF-4 inhibited the interaction of β-catenin and androgen receptor. Taken together, the data show that β-catenin can bind to the androgen receptor LBD and modulate the effects of the androgen receptor NTD and TIF2 on transcription.


2003 ◽  
Vol 80 ◽  
pp. 152
Author(s):  
R.D. Powers ◽  
Michael M. Alper ◽  
Marie Hayes ◽  
Shafrira Shai ◽  
G. Fihman

2010 ◽  
Vol 107 (36) ◽  
pp. 15728-15732 ◽  
Author(s):  
S. T. Arold ◽  
P. G. Leonard ◽  
G. N. Parkinson ◽  
J. E. Ladbury

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