Thermal Rectification in Silicon Nanowires With Mass Gradients

2008 ◽  
Author(s):  
Shuai-Chuang Wang ◽  
Xin-Gang Liang ◽  
Xiang-Hua Xu
Keyword(s):  
Molecular Dynamics ◽  
Heat Flux ◽  
Molecular Dynamics Simulation ◽  
Silicon Nanowires ◽  
Dynamics Simulation ◽  
Effect Of Temperature ◽  
Phonon Density ◽  
Phonon Density Of States ◽  
Thermal Rectification ◽  
Axial Mass

Thermal rectification as a new phenomenon is attracting great attention. Thermal rectification in silicon nanowires with axial mass gradient is investigated by molecular dynamics simulation. The results of the simulations show that the thermal conductivities are different for the heat flux with opposite directions. The rectification efficiency becomes larger when the mass gradient increases. The effect of temperature gradient on the thermal rectification is also considered. The phonon density of states is calculated to explain the phenomenon. It is found that the interface is responsible to the thermal rectification.

Thermal Rectification in Bi-Layered Nanofilm by Molecular Dynamics

2009 ◽  
Author(s):  
Shuai-Chuang Wang ◽  
Xin-Gang Liang
Keyword(s):  
Thermal Conductivity ◽  
Molecular Dynamics ◽  
Heat Flux ◽  
Density Of States ◽  
Atomic Mass ◽  
Interfacial Thermal Resistance ◽  
Phonon Density ◽  
Total Thickness ◽  
Phonon Density Of States ◽  
Thermal Rectification

A thermal rectifier has such nature that its thermal conductance or thermal conductivity has different values with reversed heat flux direction. This work investigates the rectification of the cross-plane thermal conductivity and interfacial thermal resistance of nanoscale bi-layered films using the nonequilibrium molecular dynamics (NEMD) method. The effects of the thickness of the single layer with the total thickness constant, the ratio of the atomic mass and temperature difference in the two ends on the thermal rectification are all considered. The results of the simulations show that the thermal conductivity and the interfacial thermal resistance are different for the heat flux with opposite directions. For the composite film with two layers of the same thicknesses, the thermal conductivity is larger when the heat flux direction is from the light layer to the heavy one. The difference becomes larger when the ratio of the atomic mass in the two layers increases. Increasing the heat flux makes the rectification of thermal conductivity larger, which means that the rectification is dependent on the temperature. For the composite film with fixed total thickness, the rectification becomes smaller when the thickness of the light layer increases. When the light layer is thick enough, the rectification is found reversed, which means that the thermal conductivity is larger with the heat flux direction from the heavy layer to the light one. The phonon density of states is also calculated to explain the phenomenon, and it is found that the overlap of the phonon density of states for the two layers is almost same even if the rectification of the thermal conductivity is reversed.

scholarly journals Effects of the Temperature and the pH on the Main Protease of SARS-CoV-2: A Molecular Dynamics Simulation Study

2021 ◽  
Vol 12 (6) ◽  
pp. 7239-7248
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Root Mean Square ◽  
Dynamics Simulation ◽  
Effect Of Temperature ◽  
Water Molecules ◽  
Mean Square ◽  
Main Protease ◽  
Decreasing Ph ◽  
Increasing Temperature

The novel coronavirus, recognized as COVID-19, is the cause of an infection outbreak in December 2019. The effect of temperature and pH changes on the main protease of SARS-CoV-2 were investigated using all-atom molecular dynamics simulation. The obtained results from the root mean square deviation (RMSD) and root mean square fluctuations (RMSF) analyses showed that at a constant temperature of 25℃ and pH=5, the conformational change of the main protease is more significant than that of pH=6 and 7. Also, by increasing temperature from 25℃ to 55℃ at constant pH=7, a remarkable change in protein structure was observed. The radial probability of water molecules around the main protease was decreased by increasing temperature and decreasing pH. The weakening of the binding energy between the main protease and water molecules due to the increasing temperature and decreasing pH has reduced the number of hydrogen bonds between the main protease and water molecules. Finding conditions that alter the conformation of the main protease could be fundamental because this change could affect the virus’s functionality and its ability to impose illness.

Effect of temperature on properties of aluminum/single-walled carbon nanotube nanocomposite by molecular dynamics simulation

2019 ◽  
Vol 234 (2) ◽  
pp. 635-642 ◽  
Author(s):  
Mohsen Motamedi ◽  
AH Naghdi ◽  
SK Jalali
Keyword(s):  
Mechanical Properties ◽  
Molecular Dynamics ◽  
Carbon Nanotube ◽  
Molecular Dynamics Simulation ◽  
Young’S Modulus ◽  
Young's Modulus ◽  
Strain Curve ◽  
Dynamics Simulation ◽  
Effect Of Temperature ◽  
Metal Composite

Composite materials have become popular because of high mechanical properties and lightweight. Aluminum/carbon nanotube is one of the most important metal composite. In this research, mechanical properties of aluminum/carbon nanotube composite were obtained using molecular dynamics simulation. Then, effect of temperature on stress–strain curve of composite was studied. The results showed by increasing temperature, the Young’s modulus of composite was decreased. More specifically increasing the temperature from 150 K to 620 K, decrease the Young’s modulus to 11.7%. The ultimate stress of composite also decreased by increasing the temperature. A continuum model of composite was presented using finite element method. The results showed the role of carbon nanotube on strengthening of composite.

The Effect of Temperature on the Interaction of Phenanthroline-based Ligands with G-quadruplex: In Silico Viewpoint

2019 ◽  
Vol 22 (8) ◽  
pp. 546-554
Author(s):  
Mohadeseh Bazoobandi ◽  
Mohammad R. Bozorgmehr ◽  
Ali Mahmoudi ◽  
Ali Morsali
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Low Temperatures ◽  
Simulation Method ◽  
Dynamics Simulation ◽  
Effect Of Temperature ◽  
Quadruplex Structure ◽  
G Quadruplex ◽  
The Stability ◽  
Increasing Temperature

Aim and Objective: The stability of the G-quadruplex structure can increase its activity in telomerase inhibiting cancer cells. In this study, a molecular dynamics simulation method was used to study the effect of three phenanthroline-based ligands on the structure of G-quadruplex at the temperatures of 20, 40, 60 and 80°C. Materials and Methods: RMSD values and frequency of calculated RMSD in the presence and absence of ligands show that ligands cause the relative stability of the G-quadruplex, particularly at low temperatures. The calculation of hydrogen bonds in Guanine-tetrads in three different quadruplex sheets shows that the effect of ligands on the sheets is not the same so that the bottom sheet of G-quadruplex is most affected by the ligands at high temperatures, and the Guaninetetrads in this sheet are far away. Conformation factor was calculated as a measure of ligands binding affinity for each of the G-quadruplex residues. Results: The results show that the studied ligands interact more with the G-quadruplex than loop areas, although with increasing temperature, the binding area also includes the G-quadruplex sheets. The contribution of each of the residues involved in the G-quadruplex binding area with ligands was also calculated. Conclusion: The calculations performed are consistent with the previous experimental observations that can help to understand the molecular mechanism of the interaction of phenanthroline and its derivatives with quadruplex.

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