Prevalence and Genetic Analysis ofmcr-3-PositiveAeromonasSpecies from Humans, Retail Meat, and Environmental Water Samples
ABSTRACTThe mobile colistin resistance genemcr-3is globally disseminated in bothEnterobacteriaceaeandAeromonasspecies, with the latter potentially serving as a reservoir for this gene. Here, we investigated the prevalence ofmcr-3in rectal swabs from humans, in food-producing animals and their products, and in the aquatic environment, and we investigated the genetic relationships between themcr-3-positive isolates. An enriched broth screening method was used to detectmcr-3in samples, and species identification of isolates from positive samples was carried out by matrix-assisted laser desorption ionization–time of flight mass spectrometry and shotgun sequencing. Allmcr-3-positive isolates were subjected to antimicrobial susceptibility testing, conjugation, and whole-genome sequencing. TenAeromonasisolates, including 2 from human rectal swabs, 1 from pork, 3 from chicken meat, and 4 from the aquatic environment, were positive formcr-3, but only 2 showed resistance to colistin. In addition to themcr-3variants identified previously (the novel variants were termedmcr-3.13tomcr-3.18), all isolates harboredmcr-3-like genes downstream of themcr-3variants. The MCR-3.13 to MCR-3.18 proteins exhibited only 89.2% to 96.1% amino acid identity to the original MCR-3 protein. Whole-genome sequence analysis indicated diversity within the genetic environments ofmcr-3-positiveAeromonasisolates and possible transmission between different sources in China and even worldwide. Close relationships betweenmcr-3-positive andmcr-3-negativeAeromonasisolates suggested thatmcr-3might be common inAeromonasspecies, which are not inherent hosts ofmcr-3but may act as an important reservoir of this mobile colistin resistance gene.