scholarly journals Fungal Community Shifts in Structure and Function across a Boreal Forest Fire Chronosequence

2015 ◽  
Vol 81 (22) ◽  
pp. 7869-7880 ◽  
Author(s):  
Hui Sun ◽  
Minna Santalahti ◽  
Jukka Pumpanen ◽  
Kajar Köster ◽  
Frank Berninger ◽  
...  
Keyword(s):  
Boreal Forest ◽  
Forest Fire ◽  
Fungal Community ◽  
Structure And Function ◽  
Fire Disturbance ◽  
Fungal Communities ◽  
Content Type ◽  
Soil Fungal Community ◽  
Ecm Fungi ◽  
And Function

ABSTRACTForest fires are a common natural disturbance in forested ecosystems and have a large impact on the microbial communities in forest soils. The response of soil fungal communities to forest fire is poorly documented. Here, we investigated fungal community structure and function across a 152-year boreal forest fire chronosequence using high-throughput sequencing of the internal transcribed spacer 2 (ITS2) region and a functional gene array (GeoChip). Our results demonstrate that the boreal forest soil fungal community was most diverse soon after a fire disturbance and declined over time. The differences in the fungal communities were explained by changes in the abundance of basidiomycetes and ascomycetes. Ectomycorrhizal (ECM) fungi contributed to the increase in basidiomycete abundance over time, with the operational taxonomic units (OTUs) representing the generaCortinariusandPilodermadominating in abundance. Hierarchical cluster analysis by using gene signal intensity revealed that the sites with different fire histories formed separate clusters, suggesting differences in the potential to maintain essential biogeochemical soil processes. The site with the greatest biological diversity had also the most diverse genes. The genes involved in organic matter degradation in the mature forest, in which ECM fungi were the most abundant, were as common in the youngest site, in which saprotrophic fungi had a relatively higher abundance. This study provides insight into the impact of fire disturbance on soil fungal community dynamics.

scholarly journals Effects of long-term integrated agri-aquaculture on the soil fungal community structure and function in vegetable fields

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Xianqing Zheng ◽  
Ke Song ◽  
Shuangxi Li ◽  
Hanlin Zhang ◽  
Naling Bai ◽  
...  
Keyword(s):  
Community Structure ◽  
Fungal Community ◽  
Soil Fungi ◽  
Structure And Function ◽  
Dominant Factor ◽  
Fungal Community Structure ◽  
Vegetable Field ◽  
Soil Fungal Community ◽  
Field Systems ◽  
And Function

AbstractThe diversity and community structure of soil fungi play an important role in crop production and ecosystem balance, especially in paddy-upland vegetable field systems. High-throughput sequencing was used to study changes in the soil fungal community structure and function in paddy-upland vegetable field systems. The results showed that compared with traditional planting, the diversity and community structure of soil fungi were changed by the combination of flooding and drought, the Shannon index increased by 11.07%, and the proportion of the dominant species, Mortierella, decreased by 22.74%. Soil available nitrogen, total phosphorus, available phosphorus, total nitrogen and organic matter played a leading role in the initial stage of the experiment, while the dominant factor changed to total potassium 3 years later and then to soil pH and water content 6 years later. FUNGuild analysis showed that the proportion of three independent trophic modes of soil fungi were increased by the combined flooded-drought model, and there were multiple interaction factors, For example, nutrient supply, pH and planting pattern. This study showed that soil fertility, crop yield and economic benefits were better than the traditional model after three years of planting and breeding. The longer the time, the better the effect.

scholarly journals Bacterial community structure and function shift across a northern boreal forest fire chronosequence

2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Hui Sun ◽  
Minna Santalahti ◽  
Jukka Pumpanen ◽  
Kajar Köster ◽  
Frank Berninger ◽  
...  
Keyword(s):  
Community Structure ◽  
Bacterial Community ◽  
Boreal Forest ◽  
Forest Fire ◽  
Bacterial Community Structure ◽  
Structure And Function ◽  
And Function

Reflections on team culture, structure and function of an intensive support service centred on positive behavioural support

2016 ◽  
Vol 21 (4) ◽  
pp. 203-211 ◽  
Author(s):  
Lawrence A. Patterson ◽  
Samuel Berry
Keyword(s):  
Social Services ◽  
Support Service ◽  
Structure And Function ◽  
Content Type ◽  
Case Examples ◽  
Behavioural Support ◽  
Team Culture ◽  
Shared Identity ◽  
The Right ◽  
And Function

Purpose The purpose of this paper is to explore experiences of team culture, structure and function of an intensive support service (ISS) within the context of the recent service guidance “Building the Right Support” (NHS England, Local Government Association and Association of Directors of Adult Social Services, 2015). Reflections on the Hampshire and Southampton ISS set up in 2010 are discussed with a view to informing a debate about frameworks for ISS services nationally. Design/methodology/approach A reflective piece, drawing on experience and case examples. Findings This paper describes that a key function of an ISS is making individuals safe and this is significantly assisted by using shared team formulation, which can enable information and perspectives to be shared between and within teams as rapidly as possible. Further, a case is made for recognising the importance of inter-disciplinary practice, as the Southampton and Hampshire ISS has removed the “old fashioned” demarcations that led to individuals seeing a “procession” of different professionals from different disciplines. This relates to team structure, but importantly is about a culture of holding a shared identity based on positive behavioural support values, rather than a traditional uni-disciplinary perspective. Practical implications ISS models are being proposed by NHS England and this paper suggests some important practical aspects. Originality/value Limited literature exists examining the team culture within ISSs, which contributes to desired outcomes for service users. This paper opens a debate about structural and functional aspects of service delivery in this service model.

scholarly journals Campylobacter jejuni Triggers Signaling through Host Cell Focal Adhesions To Inhibit Cell Motility

mBio ◽  
2021 ◽  
Author(s):  
Courtney M. Klappenbach ◽  
Nicholas M. Negretti ◽  
Jesse Aaron ◽  
Teng-Leong Chew ◽  
Michael E. Konkel
Keyword(s):  
Epithelial Cells ◽  
Cell Motility ◽  
Host Cell ◽  
Campylobacter Jejuni ◽  
Focal Adhesion ◽  
Foodborne Pathogen ◽  
Focal Adhesions ◽  
Structure And Function ◽  
Content Type ◽  
And Function

Campylobacter jejuni is a major foodborne pathogen that causes severe gastritis. We investigated the dynamics of focal adhesion structure and function in C. jejuni -infected epithelial cells.

scholarly journals Species associations overwhelm abiotic conditions to dictate the structure and function of wood-decay fungal communities

Ecology ◽  
2018 ◽  
Vol 99 (4) ◽  
pp. 801-811 ◽  
Author(s):  
Daniel S. Maynard ◽  
Kristofer R. Covey ◽  
Thomas W. Crowther ◽  
Noah W. Sokol ◽  
Eric W. Morrison ◽  
...  
Keyword(s):  
Wood Decay ◽  
Structure And Function ◽  
Fungal Communities ◽  
Abiotic Conditions ◽  
And Function

scholarly journals Diversity and Structure of Soil Fungal Communities across Experimental Everglades Tree Islands

Diversity ◽  
2020 ◽  
Vol 12 (9) ◽  
pp. 324
Author(s):  
Brianna K. Almeida ◽  
Michael S. Ross ◽  
Susana L. Stoffella ◽  
Jay P. Sah ◽  
Eric Cline ◽  
...  
Keyword(s):  
Water Level ◽  
Fungal Community ◽  
Plant Pathogen ◽  
Fungal Diversity ◽  
Fungal Communities ◽  
Tree Islands ◽  
Fungal Community Composition ◽  
Everglades Tree Islands ◽  
And Function ◽  
Early Restoration

Fungi play prominent roles in ecosystem services (e.g., nutrient cycling, decomposition) and thus have increasingly garnered attention in restoration ecology. However, it is unclear how most management decisions impact fungal communities, making it difficult to protect fungal diversity and utilize fungi to improve restoration success. To understand the effects of restoration decisions and environmental variation on fungal communities, we sequenced soil fungal microbiomes from 96 sites across eight experimental Everglades tree islands approximately 15 years after restoration occurred. We found that early restoration decisions can have enduring consequences for fungal communities. Factors experimentally manipulated in 2003–2007 (e.g., type of island core) had significant legacy effects on fungal community composition. Our results also emphasized the role of water regime in fungal diversity, composition, and function. As the relative water level decreased, so did fungal diversity, with an approximately 25% decline in the driest sites. Further, as the water level decreased, the abundance of the plant pathogen–saprotroph guild increased, suggesting that low water may increase plant-pathogen interactions. Our results indicate that early restoration decisions can have long-term consequences for fungal community composition and function and suggest that a drier future in the Everglades could reduce fungal diversity on imperiled tree islands.

scholarly journals Redevelopment of biological activity in stripmine spoils: saprotrophic fungi – abstract

1988 ◽  
Vol 94 ◽  
pp. 85-85
Author(s):  
Suzanne Visser
Keyword(s):  
Fungal Community ◽  
Soil Disturbance ◽  
Plant Residues ◽  
Fungal Community Composition ◽  
Saprotrophic Fungi ◽  
Fungal Community Structure ◽  
Soil Fungal Community ◽  
And Function ◽  
The Impact ◽  
Decomposition Of Plant Residues

The impact of severe soil disturbance on soil fungal community composition and function and how this relates to the resultant decomposition/mineralisation process is very poorly understood. Consequently, research was conducted to determine: (a) to what degree fungal community structure and potential function are altered in a sub-alpine coal mine spoil (Luscar, Alberta), and (b) how do alterations in the fungal community affect patterns of fungal colonisation and decomposition of plant residues deposited on recently mined soil.

scholarly journals Regulation of OmpA Translation and Shigella dysenteriae Virulence by an RNA Thermometer

2019 ◽  
Vol 88 (3) ◽  
Author(s):  
Erin R. Murphy ◽  
Johanna Roßmanith ◽  
Jacob Sieg ◽  
Megan E. Fris ◽  
Hebaallaha Hussein ◽  
...  
Keyword(s):  
In Silico ◽  
Bacterial Species ◽  
Regulation Of Gene Expression ◽  
Structure And Function ◽  
Shigella Dysenteriae ◽  
Content Type ◽  
Bacterial Physiology ◽  
Wide Range ◽  
Rna Thermometer ◽  
And Function

ABSTRACT RNA thermometers are cis-acting riboregulators that mediate the posttranscriptional regulation of gene expression in response to environmental temperature. Such regulation is conferred by temperature-responsive structural changes within the RNA thermometer that directly result in differential ribosomal binding to the regulated transcript. The significance of RNA thermometers in controlling bacterial physiology and pathogenesis is becoming increasingly clear. This study combines in silico, molecular genetics, and biochemical analyses to characterize both the structure and function of a newly identified RNA thermometer within the ompA transcript of Shigella dysenteriae. First identified by in silico structural predictions, genetic analyses have demonstrated that the ompA RNA thermometer is a functional riboregulator sufficient to confer posttranscriptional temperature-dependent regulation, with optimal expression observed at the host-associated temperature of 37°C. Structural studies and ribosomal binding analyses have revealed both increased exposure of the ribosomal binding site and increased ribosomal binding to the ompA transcript at permissive temperatures. The introduction of site-specific mutations predicted to alter the temperature responsiveness of the ompA RNA thermometer has predictable consequences for both the structure and function of the regulatory element. Finally, in vitro tissue culture-based analyses implicate the ompA RNA thermometer as a bona fide S. dysenteriae virulence factor in this bacterial pathogen. Given that ompA is highly conserved among Gram-negative pathogens, these studies not only provide insight into the significance of riboregulation in controlling Shigella virulence, but they also have the potential to facilitate further understanding of the physiology and/or pathogenesis of a wide range of bacterial species.

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