scholarly journals A Technique To Quantify the Population Size and Composition of the Biofilm Component in Communities of Bacteria in the Phyllosphere

1998 ◽  
Vol 64 (12) ◽  
pp. 4789-4795 ◽  
Author(s):  
Cindy E. Morris ◽  
Jean-Michel Monier ◽  
Marie-Agnès Jacques
Keyword(s):  
Bacterial Population ◽  
Culture Media ◽  
Retention Rates ◽  
Plant Tissues ◽  
Oligonucleotide Probes ◽  
Terrestrial Plants ◽  
Living Plant ◽  
Microbial Biofilms ◽  
Broad Leaf

ABSTRACT The presence of microbial biofilms in the phyllosphere of terrestrial plants has recently been demonstrated, but few techniques to study biofilms associated with living plant tissues are available. Here we report a technique to estimate the proportion of the bacterial population on leaves that is assembled in biofilms and to quantitatively isolate bacteria from the biofilm and nonbiofilm (solitary) components of phyllosphere microbial communities. This technique is based on removal of bacteria from leaves by gentle washing, separation of biofilm and solitary bacteria by filtration, and disintegration of biofilms by ultrasonication. The filters used for this technique were evaluated for their nonspecific retention rates of solitary bacteria and for the efficiency of filtration for different concentrations of solitary bacteria in the presence of biofilms and other particles. The lethality and efficiency of disintegration of the sonication conditions used here were also evaluated. Isolation and quantification of bacteria by this technique is based on use of culture media. However, oligonucleotide probes, sera, or epifluorescent stains could also be used for direct characterization of the biofilm and solitary bacteria in the suspensions generated by this technique. Preliminary results from estimates of biofilm abundance in phyllosphere communities show that bacteria in biofilms constitute between about 10 and 40% of the total bacterial population on broad-leaf endive and parsley leaves.

scholarly journals Clohesyomyces symbioticus sp. nov., a fungal endophyte associated with roots of water smartweed (Persicaria amphibia)

2021 ◽  
Vol 66 (2) ◽  
pp. 201-210
Author(s):  
A. Elizabeth Arnold ◽  
Dustin Sandberg
Keyword(s):  
Aquatic Plant ◽  
Fungal Endophytes ◽  
Fungal Endophyte ◽  
Western Hemisphere ◽  
Plant Tissues ◽  
Plant Responses ◽  
Terrestrial Plants ◽  
Living Plant ◽  
Terrestrial Environments ◽  
Lentic Waters

The widespread aquatic plant Persicaria amphibia (water smartweed, Polygonaceae) occurs in both flooded aquatic habitats and moist terrestrial environments. Its physiological versatility and wide geographic range highlight its resilience to stress and make the species intriguing for the study of fungal endophytes. Endophytes occur within living plant tissues and are known from diverse aquatic, marine, and terrestrial plants, where they often mitigate plant responses to stress. As part of a study evaluating endophyte communities associated with aquatic plants in lentic waters of Arizona, USA, we isolated a distinctive clade of endophytes from healthy, living roots of seasonally inundated P. amphibia, which we describe here on the basis of morphology and evidence from four loci as new species Clohesyomyces symbioticus (Lindgomycetaceae, Pleosporales, Dothideomycetes, Ascomycota). Clohesyomyces has long been considered a monotypic genus comprising the saprobic species C. aquaticus, presently known from submerged wood in freshwater systems in Asia and Australia. Description of Clohesyomyces symbioticus highlights the occurrence of endophytism in this genus and expands its geographic scope to the western hemisphere.

scholarly journals The Coevolution of Plants and Microbes Underpins Sustainable Agriculture

2021 ◽  
Vol 9 (5) ◽  
pp. 1036
Author(s):  
Dongmei Lyu ◽  
Levini A. Msimbira ◽  
Mahtab Nazari ◽  
Mohammed Antar ◽  
Antoine Pagé ◽  
...  
Keyword(s):  
Microbial Community ◽  
Plant Growth ◽  
Stress Resistance ◽  
Mycorrhizal Fungi ◽  
Plant Tissues ◽  
Terrestrial Plants ◽  
Plant Host ◽  
Symbiotic Relationships ◽  
Wide Range ◽  
Terrestrial Environments

Terrestrial plants evolution occurred in the presence of microbes, the phytomicrobiome. The rhizosphere microbial community is the most abundant and diverse subset of the phytomicrobiome and can include both beneficial and parasitic/pathogenic microbes. Prokaryotes of the phytomicrobiome have evolved relationships with plants that range from non-dependent interactions to dependent endosymbionts. The most extreme endosymbiotic examples are the chloroplasts and mitochondria, which have become organelles and integral parts of the plant, leading to some similarity in DNA sequence between plant tissues and cyanobacteria, the prokaryotic symbiont of ancestral plants. Microbes were associated with the precursors of land plants, green algae, and helped algae transition from aquatic to terrestrial environments. In the terrestrial setting the phytomicrobiome contributes to plant growth and development by (1) establishing symbiotic relationships between plant growth-promoting microbes, including rhizobacteria and mycorrhizal fungi, (2) conferring biotic stress resistance by producing antibiotic compounds, and (3) secreting microbe-to-plant signal compounds, such as phytohormones or their analogues, that regulate aspects of plant physiology, including stress resistance. As plants have evolved, they recruited microbes to assist in the adaptation to available growing environments. Microbes serve themselves by promoting plant growth, which in turn provides microbes with nutrition (root exudates, a source of reduced carbon) and a desirable habitat (the rhizosphere or within plant tissues). The outcome of this coevolution is the diverse and metabolically rich microbial community that now exists in the rhizosphere of terrestrial plants. The holobiont, the unit made up of the phytomicrobiome and the plant host, results from this wide range of coevolved relationships. We are just beginning to appreciate the many ways in which this complex and subtle coevolution acts in agricultural systems.

Characterization of 1, 3-β-glucanases produced during autolysis of Penicillium oxalicum in different culture media

1987 ◽  
Vol 88 (3) ◽  
pp. 317-321 ◽  
Author(s):  
J.L. Copa-Patiño ◽  
I.F. Monistrol ◽  
F. Laborda ◽  
M.I. Pérez-Leblic
Keyword(s):  
Culture Media ◽  
Penicillium Oxalicum

Characterization of the impact of classical cell‐culture media on the response of electrochemical sensors

2021 ◽  
Author(s):  
Ayman Chmayssem ◽  
Lauriane Petit ◽  
Nicolas Verplanck ◽  
Véronique Mourier ◽  
Séverine Vignoud ◽  
...  
Keyword(s):  
Cell Culture ◽  
Electrochemical Sensors ◽  
Culture Media ◽  
Cell Culture Media ◽  
The Impact

The current state of mycotoxin biomarker development in humans and animals and the potential for application to plant systems

2011 ◽  
Vol 4 (3) ◽  
pp. 257-270 ◽  
Author(s):  
T. Baldwin ◽  
R. Riley ◽  
N. Zitomer ◽  
K. Voss ◽  
R. Coulombe Jr. ◽  
...  
Keyword(s):  
Disease Risk ◽  
Biological Effects ◽  
Fusarium Verticillioides ◽  
Laboratory Animals ◽  
Plant Tissues ◽  
Living Plant ◽  
Disease Symptoms ◽  
Mechanisms Of Toxicity ◽  
Livestock Feeds ◽  
Commercially Important

Filamentous fungi that contaminate livestock feeds and human food supply often produce toxigenic secondary metabolites known as mycotoxins. Among the hundreds of known mycotoxins, aflatoxins, deoxynivalenol, fumonisins, ochratoxin A and zearalenone are considered the most commercially important. Intense research on these mycotoxins, especially aflatoxin, has resulted in the development of 'biomarkers' used to link exposure to disease risk. In the case of aflatoxin this effort has led to the discovery of both exposure and mechanism-based biomarkers, which have proven essential for understanding aflatoxin's potential for causing disease in humans, including subtle effects on growth and immune response. Fumonisin biomarkers have also been used extensively in farm and laboratory animals to study the fumonisin-induced disruption of cellular and systemic physiology which leads to disease. This review summarises the status of mycotoxin biomarker development in humans and animals for the commercially important mycotoxins. Since the fungi responsible for the production of these mycotoxins are often endophytes that infect and colonise living plant tissues, accumulation of mycotoxins in the plant tissues may at times be associated with development of plant disease symptoms. The presence of mycotoxins, even in the absence of disease symptoms, may still have subtle biological effects on the physiology of plants. This review examines the question of whether or not the knowledge gained from mechanistic studies and development of biomarkers in animal and human systems is transferable to the study of mycotoxin effects on plant systems. Thus far, fumonisin has proven amenable to development of mechanism-based biomarkers to study maize seedling disease caused by the fumonisin producer, Fusarium verticillioides. Expanding our knowledge of mechanisms of toxicity and the overt and subtle effects on animal, human, and plant systems through the identification and validation of biomarkers will further our ability to monitor and limit the damage and economic impact of mycotoxins.

scholarly journals MOLECULAR DETECTION AND CHARACTERIZATION OF STAPHYLOCOCCUS AUREUS ISOLATED FROM RAW MILK SOLD IN DIFFERENT MARKETS OF BANGLADESH

2017 ◽  
Vol 14 (2) ◽  
pp. 277-282 ◽  
Author(s):  
M. A. Islam ◽  
S. M. L. Kabir ◽  
M. T. Rahman
Keyword(s):  
Molecular Detection ◽  
Culture Media ◽  
Raw Milk ◽  
Rrna Gene ◽  
Biochemical Tests ◽  
Selective Media ◽  
Milk Samples ◽  
Antimicrobial Sensitivity ◽  
Antimicrobial Sensitivity Test

The study was intended for molecular detection of S. aureus isolated from raw cow’s milk. A total of 20 milk samples were collected from different upazila markets of Jamalpur, Tangail, Kishoreganj and Netrokona districts of Bangladesh. Milk samples were cultured onto various culture media for the isolation of bacteria. The isolated bacteria were identified by studying cultural properties on different selective media, biochemical tests, and finally by PCR. Out of 20 samples, 15 (75%) milk samples were found to be positive for S. aureus. S. aureus specific 16S rRNA gene was amplified from all isolates and identified as S. aureus. Antimicrobial sensitivity test was carried out to ascertain the susceptibility of the organism to various antibiotics. Its results showed that the S. aureus isolates were resistant to amoxicillin (100%), erythromycin (73.33%) and tetracycline (73.33%) but sensitive to azithromycin (93.33%), ciprofloxacin (93.33%), gentamicin (100%), norfloxacin (86.67%) and streptomycin (86.67%).

Noninvasive characterization of metabolites secreted in culture media by bovine embryos during in vitro production

Metabolomics ◽  
2016 ◽  
Vol 12 (5) ◽  
Author(s):  
Érika Cristina dos Santos ◽  
Camila Bruna de Lima ◽  
Kelly Annes ◽  
Marcella Pecora Milazzotto
Keyword(s):  
Culture Media ◽  
Bovine Embryos ◽  
In Vitro Production ◽  
Noninvasive Characterization ◽  
Vitro Production

scholarly journals Fungicidal effect of silver nanoparticles on toxigenic fungi in cocoa

2016 ◽  
Vol 51 (12) ◽  
pp. 1929-1936 ◽  
Author(s):  
Raquel Villamizar-Gallardo ◽  
Johann Faccelo Osma Cruz ◽  
Oscar Orlando Ortíz-Rodriguez
Keyword(s):  
Silver Nanoparticles ◽  
Fusarium Solani ◽  
Theobroma Cacao ◽  
Mycelial Growth ◽  
Culture Media ◽  
Fungal Growth ◽  
Inhibitory Effect ◽  
Plant Tissues ◽  
Inhibition Effect ◽  
Toxigenic Fungi

Abstract: The objective of this work was to evaluate the microbicidal effect of silver nanoparticles (AgNPs) on potentially toxigenic fungi affecting cocoa (Theobroma cacao) crops. These fungi, isolated from diseased cocoa pods, were characterized phenotypically and genotypically. The microbicidal effect was assessed by measuring radial mycelial growth, in synthetic culture media, and at different AgNP concentrations in plant tissues. The inhibition effect was monitored in Petri dishes, and changes in fungal structures were observed through scanning electron microscopy. Two potentially toxigenic fungi were highly prevalent: Aspergillus flavus and Fusarium solani. The inhibition assays, performed in liquid and solid synthetic culture media, showed that AgNPs did not significantly affect the growth of these fungi, even at the highest concentration (100 ppm). By contrast, they showed a positive inhibitory effect in plant tissues, especially in the cortex, when infected with A. flavus, in which an 80 ppm dose completely inhibited fungal growth. However, once fungi have managed to penetrate inside the pods, their growth is unavoidable, and AgNP effect is reduced. On F. solani, the studied nanomaterial only induced some texture and pigmentation changes. The microbicidal effect of chemically synthesized silver nanoparticles is greater in plant tissues than in culture media.

scholarly journals Short Communication: Characterization of Rhizoctonia-like mycorrhizae associated with five Dendrobium species in Java, Indonesia

2020 ◽  
Vol 21 (3) ◽  
Author(s):  
R Soelistijono ◽  
D.S. UTAMI ◽  
DARYANTI ◽  
M. FAIZIN ◽  
R. DIAN
Keyword(s):  
Short Communication ◽  
Culture Media ◽  
Dry Season ◽  
The Other ◽  
Root Tissue ◽  
Binucleate Rhizoctonia ◽  
Anatomical Characteristics ◽  
Macroscopic Observation

Abstract. Soelistijono R, Utami DS, Daryanti, Faizin M, Dian R. 2020. Plankton biodiversity in various typologies of inundation in Paminggir swamp, South Kalimantan, Indonesia on dry season. Biodiversitas 21: 1007-1011. This study aims to determine the morphological and anatomical characteristics of Rhizoctonia-like mycorrhizae associated with the roots of five Dendrobium species; to determine the association between Rhizoctonia-like mycorrhizae with the root of five Dendrobium sp.; to obtain difference between Rhizoctonia-like mycorrhizae with the other in adjacent location Mycorrhizal observations of Rhizoctonia-like mycorrhizae in this study were carried out macroscopically (morphologically) and microscopically (anatomically). The macroscopic observation was performed by observing directly the development of fungal colonies on culture media. Microscopic observations were performed to determine the shape of the hyphal of fungi and the number of nuclei. The results showed that the Rhizoctonia-like mycorrhizae associated with the root of five species of Dendrobium sp. in Java were the binucleate Rhizoctonia groups (BNR). The binucleate Rhizoctonia has white colonies, right-angle branching hyphae, two nuclei, and brown hyphae. The association of the root of five species of Dendrobium sp.with Rhizoctonia-like mycorrhizae fungi was indicated by the existence of a peloton structure in cortical root tissue.

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