scholarly journals Spatial and Resource Factors Influencing High Microbial Diversity in Soil

2002 ◽  
Vol 68 (1) ◽  
pp. 326-334 ◽  
Author(s):  
Jizhong Zhou ◽  
Beicheng Xia ◽  
David S. Treves ◽  
L.-Y. Wu ◽  
Terry L. Marsh ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Communities ◽  
Uniform Distribution ◽  
Diversity Index ◽  
Carbon Surface ◽  
Low Carbon ◽  
Small Subunit Rrna ◽  
Surface Soils ◽  
Diversity Patterns ◽  
Spatial Isolation

ABSTRACT To begin defining the key determinants that drive microbial community structure in soil, we examined 29 soil samples from four geographically distinct locations taken from the surface, vadose zone, and saturated subsurface using a small-subunit rRNA-based cloning approach. While microbial communities in low-carbon, saturated, subsurface soils showed dominance, microbial communities in low-carbon surface soils showed remarkably uniform distributions, and all species were equally abundant. Two diversity indices, the reciprocal of Simpson’s index (1/D) and the log series index, effectively distinguished between the dominant and uniform diversity patterns. For example, the uniform profiles characteristic of the surface communities had diversity index values that were 2 to 3 orders of magnitude greater than those for the high-dominance, saturated, subsurface communities. In a site richer in organic carbon, microbial communities consistently exhibited the uniform distribution pattern regardless of soil water content and depth. The uniform distribution implies that competition does not shape the structure of these microbial communities. Theoretical studies based on mathematical modeling suggested that spatial isolation could limit competition in surface soils, thereby supporting the high diversity and a uniform community structure. Carbon resource heterogeneity may explain the uniform diversity patterns observed in the high-carbon samples even in the saturated zone. Very high levels of chromium contamination (e.g., >20%) in the high-organic-matter soils did not greatly reduce the diversity. Understanding mechanisms that may control community structure, such as spatial isolation, has important implications for preservation of biodiversity, management of microbial communities for bioremediation, biocontrol of root diseases, and improved soil fertility.

STRUKTUR KOMUNITAS MAKRO ALGA DI PESISIR PULAU KECAMATAN BULANG

SIMBIOSA ◽  
2014 ◽  
Vol 3 (2) ◽  
Author(s):  
Notowinarto Notowinarto ◽  
Ramses Ramses ◽  
Mulhairi Mulhairi
Keyword(s):  
Community Structure ◽  
Diversity Index ◽  
Algal Species ◽  
Algal Communities ◽  
Marine Life ◽  
Ph Values ◽  
Abundance Patterns ◽  
Coastal Marine ◽  
Temperature Parameter ◽  
Important Value Index

Bulang districts Batam Islands of  Riau province (Riau Islands), its consists of many islands with as well as having the potential diversity of coastal marine life in particular kinds of macro algae or seaweed. Conducted research aimed to determine the structure of macro- algal communities in the intertidal zone islands. The results of the identification of algal species found 16 species are: the Order of Chlorophyceae as 6 spesies; Order Phaeophyceae as 2 spesies; and Order Rhodophyceae as 8 spesies. The community structure at the five stations showed the highest values were found in the island of dominance Cicir (D ' = 0.79) , uniformity index values on Tengah Island (E ' = 0.99) , while the island Balak had the highest diversity index (H ' = 0.88) , with the abundance patterns of population structure on the island is pretty good Central . Results of correlation analysis of regression between IVI types of algae with the conditions of environmental quality suggests that there is a significance (Fhit ˃ F table and the value of r = > 90 %) between IVI algae Halimeda sp and Cryptarachne polyglandulosa at each station with a temperature parameter surface (⁰C) , depth temperature (⁰C) and pH values. Keywords : Algae, Community Structure, Important Value Index.

scholarly journals Effects of Plastic Debris on the Biofilm Bacterial Communities in Lake Water

Water ◽  
2021 ◽  
Vol 13 (11) ◽  
pp. 1465
Author(s):  
Chao Shen ◽  
Liuyan Huang ◽  
Guangwu Xie ◽  
Yulai Wang ◽  
Zongkai Ma ◽  
...  
Keyword(s):  
Community Structure ◽  
Bacterial Community ◽  
Bacterial Communities ◽  
Bacterial Community Structure ◽  
Diversity Index ◽  
Plastic Substrate ◽  
Simpson Index ◽  
Plastic Debris ◽  
Plastic Substrates ◽  
Wiener Diversity Index

Increasing discharge of plastic debris into aquatic ecosystems and the worsening ecological risks have received growing attention. Once released, plastic debris could serve as a new substrate for microbes in waters. The complex relationship between plastics and biofilms has aroused great interest. To confirm the hypothesis that the presence of plastic in water affects the composition of biofilm in natural state, in situ biofilm culture experiments were conducted in a lake for 40 days. The diversity of biofilm attached on natural (cobble stones (CS) and wood) and plastic substrates (Polyethylene terephthalate (PET) and Polymethyl methacrylate (PMMA)) were compared, and the community structure and composition were also analyzed. Results from high-throughput sequencing of 16S rRNA showed that the diversity and species richness of biofilm bacterial communities on natural substrate (observed species of 1353~1945, Simpson index of 0.977~0.989 and Shannon–Wiener diversity index of 7.42~8.60) were much higher than those on plastic substrates (observed species of 900~1146, Simpson index of 0.914~0.975 and Shannon–Wiener diversity index of 5.47~6.99). The NMDS analyses were used to confirm the taxonomic significance between different samples, and Anosim (p = 0.001, R = 0.892) and Adonis (p = 0.001, R = 808, F = 11.19) demonstrated that this classification was statistically rigorous. Different dominant bacterial communities were found on plastic and natural substrates. Alphaproteobacterial, Betaproteobacteria and Synechococcophycideae dominated on the plastic substrate, while Gammaproteobacteria, Phycisphaerae and Planctomycetia played the main role on the natural substrates. The bacterial community structure of the two substrates also showed significant difference which is consistent with previous studies using other polymer types. Our results shed light on the fact that plastic debris can serve as a new habitat for biofilm colonization, unlike natural substrates, pathogens and plastic-degrading microorganisms selectively attached to plastic substrates, which affected the bacterial community structure and composition in aquatic environment. This study provided a new insight into understanding the potential impacts of plastics serving as a new habitat for microbial communities in freshwater environments. Future research should focus on the potential impacts of plastic-attached biofilms in various aquatic environments and the whole life cycle of plastics (i.e., from plastic fragments to microplastics) and also microbial flock characteristics using microbial plastics in the natural environment should also be addressed.

scholarly journals Spatial and Temporal Variation in Microbial Diversity and Community Structure in a Contaminated Mangrove Wetland

2020 ◽  
Vol 10 (17) ◽  
pp. 5850
Author(s):  
Jiaojiao Ma ◽  
Ting Zhou ◽  
Chunyu Xu ◽  
Dawen Shen ◽  
Songjun Xu ◽  
...  
Keyword(s):  
Community Structure ◽  
Spatial Variation ◽  
Temporal Variation ◽  
Bacterial Diversity ◽  
Diversity Index ◽  
Total Carbon ◽  
Spatial And Temporal Variation ◽  
Rrna Gene ◽  
Mangrove Wetland ◽  
Mangrove Soils

Field and laboratory investigations were conducted to characterize bacterial diversity and community structure in a badly contaminated mangrove wetland adjacent to the metropolitan area of a megacity in subtropical China. Next-generation sequencing technique was used for sequencing the V4–V5 region of the 16s rRNA gene on the Illumina system. Collectively, Proteobacteria, Chloroflexi, Planctomycetes, Actinobacteria and Bacteroidetes were the predominant phyla identified in the investigated soils. A significant spatial variation in bacterial diversity and community structure was observed for the investigated mangrove soils. Heavy metal pollution played a key role in reducing the bacterial diversity. The spatial variation in soil-borne heavy metals shaped the spatial variation in bacterial diversity and community structure in the study area. Other environmental factors such as total carbon and total nitrogen in the soils that are affected by seasonal change in temperature could also influence the bacterial abundance, diversity and community structure though the temporal variation was relatively weaker, as compared to spatial variation. The bacterial diversity index was lower in the investigated site than in the comparable reference site with less contaminated status. The community structure in mangrove soils at the current study site was, to a remarkable extent, different from those in the tropical mangrove wetlands around the world.

scholarly journals Effects of Ecological Restoration Using Non-Native Mangrove Kandelia obovata to Replace Invasive Spartina alterniflora on Intertidal Macrobenthos Community in Maoyan Island (Zhejiang, China)

2021 ◽  
Vol 9 (8) ◽  
pp. 788
Author(s):  
Qiuxuan Wang ◽  
Carlos Duarte ◽  
Li Song ◽  
George Christakos ◽  
Susana Agusti ◽  
...  
Keyword(s):  
Community Structure ◽  
Ecological Restoration ◽  
Spartina Alterniflora ◽  
Diversity Index ◽  
Invasion History ◽  
Kandelia Obovata ◽  
Wiener Diversity Index ◽  
Significant Difference ◽  
Spatial Differences ◽  
Average Biomass

Spartina alterniflora has extensively invaded the coastline of China, including in Maoyan Island of Zhejiang Province. Ecological restoration has been conducted using non-native mangrove Kandelia obovata to replace S. alterniflora in an attempt to restore the impacted intertidal zones. To illustrate the ecological effectiveness of the restoration projects, macrobenthos communities were studied among different habitats within the restored areas, including one non-restored S. alterniflora marsh (SA) and three differently-aged restored K. obovata stands planted in 2003, 2009, and 2011 respectively (KF14, KF8, and KF6). Besides, one unvegetated mudflat (MF) adjacent to the non-restored S. alterniflora marsh and one K. obovata forest transplanted in 2006 (RKF) at a previously barren mudflat without invasion history of S. alterniflora were set as reference sites. A total of 69 species of macrobenthos were collected from Maoyan Island, and the species richness was dominated by gastropoda (23 species), polychaeta (18 species), and malacostraca (16 species). There was no significant difference between the six sites in terms of the abundance of macrobenthos, with the average values of abundance peaking in KF6 (734.7 ind m−2) and being lowest in RKF (341.3 ind m−2). The six sites had significant differences in terms of the biomass of macrobenthos. The KF8 site contained the highest average biomass (168.3 g m−2), whereas the MF site had the lowest (54.3 g m−2). The Shannon-Wiener diversity index and Pielou’s evenness index of the macrobenthos did not exhibit significant differences among the six sites. However, the results of permutational multivariate analysis of variance (PERMANOVA) revealed significant spatial differences in the macrobenthos community structure between the sites. Since KF14 shared a similar macrobenthos community structure with RKF, while representing a strikingly different structure from SA, we infer that ecological restoration using K. obovata can restore the macrobenthos community to resemble to a normally planted K. obovata forest about 15 years after restoration.

Bird community structure in natural and urbanized habitats along an altitudinal gradient in Pauri district (Garhwal Himalaya) of Uttarakhand state, India

Biologia ◽  
2012 ◽  
Vol 67 (4) ◽  
Author(s):  
Archana Naithani ◽  
Dinesh Bhatt
Keyword(s):  
Community Structure ◽  
Altitudinal Gradient ◽  
Diversity Index ◽  
Bird Species ◽  
Bird Community ◽  
High Elevation ◽  
Base Line ◽  
Natural Habitats ◽  
Forest Habitat ◽  
Rarefaction Analysis

AbstractIn the Indian subcontinent there is hardly any study that compares the bird community structure of urban/suburban areas with those of forest habitat. The present survey identified diverse assemblages of birds in the Pauri district at different elevations. A total of 125 bird species belonging to 40 families including two least count species (Lophura leucomelanos and Pucrasia marcolopha) were recorded during this survey in the forest and urbanized habitats of Pauri District (Garhwal Hiamalaya) of Uttarakhand state, India. The high elevation (Pauri 1600–2100 m a.s.l.), mid elevation (Srikot-Khanda 900–1300 m a.s.l.) and low elevation (Srinagar 500–900 m a.s.l.) contributed 88.8%, 63.2% and 58.4% of the total species respectively. Rarefaction analysis and Shannon diversity index showed that the high elevation forest habitat had highest bird species richness (BSR) and bird species diversity (BSD) followed by the mid and then the low elevation forests. BSR and BSD fluctuated across seasons at all elevations but not across habitat types. Present study provides a base line data about avian community composition in urbanized and natural habitats along altitudinal gradient in the study area. This information may be useful to the conservation biologists for the better management and conservation of the avifauna in the Western Himalaya, a part of one of the hot biodiversity spots of the world.

Temporal and spatial variability in the community structure of the fauna of four sandy beaches in south-eastern New South Wales.

1984 ◽  
Vol 35 (6) ◽  
pp. 663 ◽  
Author(s):  
DM Dexter
Keyword(s):  
Community Structure ◽  
Diversity Index ◽  
Abundant Species ◽  
Sandy Beaches ◽  
Sampling Procedure ◽  
Wave Action ◽  
Physical Factors ◽  
Faunal Composition ◽  
South Wales ◽  
Temporal And Spatial

Four intertidal sandy beaches with different exposures, La Perouse, Ocean Beach, Dolls Point, and Towra Point, were studied for temporal and spatial changes in faunal composition and community structure. Each of these beaches was sampled from 6 to 12 times between July 1980 and July 1981 using a 500 �m sieve. A stratified random sampling procedure across the intertidal zone isolated 40 660 individuals representing 85 species. Distribution and abundance of species were strongly influenced by tidal level. Densities changed during the year but no seasonal changes in intertidal zonation patterns were found. Changes in density were correlated with the reproductive activities of the abundant species, especially Pseudolana concinna and Exoediceros maculosus at La Perouse, and Spio pacifica at Dolls Point and Towra Point. The number of species increased from high to low tide, and also increased with decreasing exposure to wave action. Crustaceans dominated the fauna in the most exposed site and decreased in abundance with increasing protection. Ocean Beach experienced the least fluctuation in physical factors such as wave action, salinity, and temperature, and its fauna exhibited the highest diversity index (H') and evenness (J'), the most stable density, and the greatest stability in faunal composition through time. The highest densities and the most species were found at Towra Point, which also was the most protected site.

Community structure and elevational diversity patterns of soil Acidobacteria

2014 ◽  
Vol 26 (8) ◽  
pp. 1717-1724 ◽  
Author(s):  
Yuguang Zhang ◽  
Jing Cong ◽  
Hui Lu ◽  
Guangliang Li ◽  
Yuanyuan Qu ◽  
...  
Keyword(s):  
Community Structure ◽  
Diversity Patterns

Phylum-Specific Primer Design and Implication in Quantification of the Microbial Community Structure in GuJingGong Pit Mud

2014 ◽  
Vol 1051 ◽  
pp. 311-316 ◽  
Author(s):  
Xi Mei Luo ◽  
Zhi Lei Gao ◽  
Hui Min Zhang ◽  
An Jun Li ◽  
Hong Kui He ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Microbial Communities ◽  
Microbial Community Structure ◽  
Real Time Quantitative Pcr ◽  
Sequencing Technologies ◽  
Specific Pcr ◽  
Pit Mud ◽  
Almost All ◽  
Polymerase Chain Reaction Primers

In recent years, despite the significant improvement of sequencing technologies such as the pyrosequencing, rapid evaluation of microbial community structures remains very difficult because of the abundance and complexity of organisms in almost all natural microbial communities. In this paper, a group of phylum-specific primers were elaborately designed based on a single nucleotide discrimination technology to quantify the main microbial community structure from GuJingGong pit mud samples using the real-time quantitative PCR (qPCR). Specific PCR (polymerase chain reaction) primers targeting a particular group would provide promising sensitivity and more in-depth assessment of microbial communities.

Heterotrophic Bacterial Community Structure of Multistage Biofilters in a Commercial Pufferfish Takifugu rubripes RAS

2013 ◽  
Vol 726-731 ◽  
pp. 1621-1627 ◽  
Author(s):  
Zhu Chen ◽  
Ying Liu ◽  
Liang Zi Liu ◽  
Xiao Jing Wang ◽  
Zhi Pei Liu ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Bacterial Community ◽  
Bacterial Community Structure ◽  
Heterotrophic Bacteria ◽  
Diversity Index ◽  
Community Diversity ◽  
Takifugu Rubripes ◽  
Recirculating Aquaculture ◽  
Microbial Resources

The success of a recirculating aquaculture system (RAS) greatly depends on the structure, dynamics and activities of microbial community. Heterotrophic bacteria as the major members play various roles. The heterotrophic bacterial community structure in threestaged biofilters was studied using four different media. 228 isolates belonging to 77species were obtained and affiliated toGammaproteobacteria,Alphaproteobacteria,Bacteroidetes,Firmicutes,ActinobacteriaandBetaproteobacteria.Gammaproteobacteriawas the predominant group. The concurrence was found between potential pathogens (VibrioandShewanella) and probiotics (BacillusandPseudomonas). On the basis of community diversity index, we could infer that differences existed between stages, and the diversity index increased along the biofilters. A comprehensive understanding of microbial community in RAS will be in favor of utilization of microbial resources and optimizing the culture systems' operation.

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