scholarly journals Draft Genome Sequence of the Radioresistant Bacterium Deinococcus grandis , Isolated from Freshwater Fish in Japan

2016 ◽  
Vol 4 (1) ◽  
Author(s):  
Katsuya Satoh ◽  
Takefumi Onodera ◽  
Kota Omoso ◽  
Kiyoko Takeda-Yano ◽  
Takeshi Katayama ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Freshwater Fish ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Genomic Sequences ◽  
The Common

Deinococcus grandis is a radioresistant bacterium isolated from freshwater fish in Japan. Here we reported the draft genome sequence of D. grandis (4.1 Mb), which will be useful for elucidating the common principles of radioresistance in Deinococcus species through the comparative analysis of genomic sequences.

scholarly journals Draft Genome Sequence of Rhizobium tropici SARCC-755, a Free-Living Rhizobium That Nodulated and Promoted Growth in Pigeonpea [Cajanus cajan (L.) Millsp.]

2020 ◽  
Vol 9 (2) ◽  
Author(s):  
Francina Lebogang Bopape ◽  
Ahmed Idris Hassen ◽  
Zacharias H. Swanevelder ◽  
Eastonce T. Gwata
Keyword(s):  
Genome Sequence ◽  
Cajanus Cajan ◽  
Draft Genome ◽  
Soil Bacterium ◽  
Draft Genome Sequence ◽  
Rhizobium Tropici ◽  
Free Living ◽  
Content Type ◽  
Legume Plant ◽  
The Common

Rhizobium tropici SARCC-755 is a free-living soil bacterium that formed nodules on pigeonpea roots in the present study. However, the draft genome sequence reveals that this Rhizobium species contains the nolR gene but lacks the common nodulation (nodABC) genes and probably uses other pathways to induce nodules on the legume plant.

scholarly journals Draft Genome Sequence of Clostridium sporogenes PA 3679, the Common Nontoxigenic Surrogate for Proteolytic Clostridium botulinum

2012 ◽  
Vol 194 (6) ◽  
pp. 1631-1632 ◽  
Author(s):  
M. Bradbury ◽  
P. Greenfield ◽  
D. Midgley ◽  
D. Li ◽  
N. Tran-Dinh ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Clostridium Botulinum ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Clostridium Sporogenes ◽  
The Common

scholarly journals Draft Genome Sequence of an Environmental trh + Vibrio parahaemolyticus K23 Strain Isolated from Kerala, India

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Divya Meparambu Prabhakaran ◽  
Goutam Chowdhury ◽  
Gururaja Perumal Pazhani ◽  
Thandavarayan Ramamurthy ◽  
Sabu Thomas
Keyword(s):  
Comparative Analysis ◽  
Genome Sequence ◽  
Vibrio Parahaemolyticus ◽  
Draft Genome ◽  
Clinical Isolates ◽  
Draft Genome Sequence

Vibrio parahaemolyticus is the leading cause of seafood-related gastroenteritis. Here, we report the draft genome sequence of a trh + strain, V. parahaemolyticus K23, isolated from seafood. The sequence will be useful for comparative analysis between environmental and clinical isolates of V. parahaemolyticus .

scholarly journals Comparative analysis using the draft genome sequence of California poppy (Eschscholzia californica) for exploring the candidate genes involved in benzylisoquinoline alkaloid biosynthesis

2021 ◽  
Vol 85 (4) ◽  
pp. 851-859
Author(s):  
Yasuyuki Yamada ◽  
Hideki Hirakawa ◽  
Kentaro Hori ◽  
Yohei Minakuchi ◽  
Atsushi Toyoda ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Plant Species ◽  
Genome Sequence ◽  
Repetitive Sequences ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Rrna Genes ◽  
Eschscholzia Californica ◽  
California Poppy ◽  
Genes Encoding

ABSTRACT Genome characterization of California poppy (Eschscholzia californica cv. “Hitoezaki”), which produces pharmaceutically important benzylisoquinoline alkaloids (BIAs), was carried out using the draft genome sequence. The numbers of tRNA and rRNA genes were close to those of the other plant species tested, whereas the frequency of repetitive sequences was distinct from those species. Comparison of the predicted genes with those of Amborella trichopoda, Nelumbo nucifera, Solanum lycopersicum, and Arabidopsis thaliana, and analyses of gene ontology and Kyoto Encyclopedia of Genes and Genomes pathway indicated that the enzyme genes involved in BIA biosynthesis were highly enriched in the California poppy genome. Further comparative analysis using the genome information of Papaver somniferum and Aquilegia coerulea, both BIA-producing plants, revealed that many genes encoding BIA biosynthetic enzymes, transcription factors, transporters, and candidate proteins, possibly related to BIA biosynthesis, were specifically distributed in these plant species.

scholarly journals A draft genome sequence of the common, or spectacled caiman Caiman crocodilus

F1000Research ◽  
2021 ◽  
Vol 10 ◽  
pp. 1230
Author(s):  
Kenichi Okamoto ◽  
Nichole Dopkins ◽  
Elias Kinfu
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
De Novo ◽  
Draft Genome ◽  
Global Market ◽  
Draft Genome Sequence ◽  
Draft Assembly ◽  
Caiman Crocodilus ◽  
The Common ◽  
Alligator Mississipiensis

The common, or spectacled, caiman Caiman crocodilus is an abundant, widely distributed Neotropical crocodilian exhibiting notable morphological and molecular diversification. The species also accounts by far for the largest share of crocodilian hides on the global market, with the C. crocodilus hide trade alone valued at about US$86.5 million per year. We obtained 239,911,946 paired-end reads comprising approximately 72 G bases using IlluminaTM sequencing of tissue sampled from a single Caiman crocodilus individual. These reads were de-novo assembled and progressively aligned against the genomes of increasingly related crocodilians; liftoff was used to annotate the draft C. crocodilus genome assembly based on an Alligator mississipiensis (a confamilial species) annotation. The draft assembly has been submitted to the National Center for Biotechnology Information and both assembly and annotation are currently available for review at doi.org/10.5281/zenodo.4755063

scholarly journals Draft Genome Sequence of the Xanthomonas bromi Type Strain LMG 947

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Lena Hersemann ◽  
Daniel Wibberg ◽  
Jochen Blom ◽  
Franco Widmer ◽  
Roland Kölliker
Keyword(s):  
Comparative Analysis ◽  
Host Plant ◽  
Genome Sequence ◽  
Type Strain ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Forage Grasses ◽  
Plant Adaptation ◽  
Host Plant Adaptation ◽  
Genome Level

Here, we report the draft genome sequence of the Xanthomonas bromi type strain LMG 947, an important pathogen of bromegrasses ( Bromus spp.). Comparative analysis with other Xanthomonas spp. that are pathogenic on forage grasses will assist the analysis of host-plant adaptation at the genome level.

scholarly journals Draft Genome Sequence of Streptomyces sp. Strain AM-2504, Identified by 16S rRNA Comparative Analysis as a Streptomyces kasugaensis Strain

2019 ◽  
Vol 8 (38) ◽  
Author(s):  
Valerio Napolioni ◽  
Lucia Cimarelli ◽  
Antonino Miano ◽  
Anna La Teana ◽  
Retina Çapuni ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
16S Rrna ◽  
Genome Sequence ◽  
Functional Characterization ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Rrna Sequence ◽  
16S Rrna Sequence ◽  
Content Type

We report here the draft genome sequence of Streptomyces sp. strain AM-2504, a microorganism producing a broad range of biotechnologically relevant molecules. The comparative analysis of its 16S rRNA sequence allowed the assignment of this strain to the Streptomyces kasugaensis species, thus fostering functional characterization of the secondary metabolites produced by this microorganism.

scholarly journals Draft Genome Sequence of Salt-Tolerant Yeast Debaryomyces hansenii var. hansenii MTCC 234

2012 ◽  
Vol 11 (7) ◽  
pp. 961-962 ◽  
Author(s):  
Shailesh Kumar ◽  
Anmoldeep Randhawa ◽  
Kaliannan Ganesan ◽  
Gajendra Pal Singh Raghava ◽  
Alok K. Mondal
Keyword(s):  
Comparative Analysis ◽  
Genome Sequence ◽  
Draft Genome ◽  
Debaryomyces Hansenii ◽  
Draft Genome Sequence ◽  
Salt Tolerant ◽  
Content Type ◽  
Insight Into

ABSTRACTDebaryomyces hanseniiis one of the most halotolerant species of yeast, and the genome sequence ofD. hanseniistrain CBS767 is already available. Here we report the 11.46-Mb draft genome ofD. hanseniistrain MTCC 234, which is even more halotolerant than strain CBS767. Comparative analysis of these sequences would definitely provide further insight into the halotolerance of this yeast.

Sign in / Sign up

Export Citation Format

Share Document