scholarly journals Salmonella typhimurium synthesizes cobalamin (vitamin B12) de novo under anaerobic growth conditions.

1984 ◽  
Vol 159 (1) ◽  
pp. 206-213 ◽  
Author(s):  
R M Jeter ◽  
B M Olivera ◽  
J R Roth
Keyword(s):  
Vitamin B12 ◽  
Salmonella Typhimurium ◽  
De Novo ◽  
Growth Conditions ◽  
Anaerobic Growth

scholarly journals A Novel Involvement of the PurG and PurI Proteins in Thiamine Synthesis Via the Alternative Pyrimidine Biosynthetic (APB) Pathway in Salmonella typhimurium

Genetics ◽  
1996 ◽  
Vol 144 (3) ◽  
pp. 883-892 ◽  
Author(s):  
Julie L Zilles ◽  
Diana M Downs
Keyword(s):  
De Novo ◽  
Point Mutations ◽  
Growth Conditions ◽  
Anaerobic Growth ◽  
Alternative Pathways ◽  
Aerobic Function ◽  
Distinct Allele ◽  
Allele Specific ◽  
Purine Pathway ◽  
Insertion Mutations

Abstract Thiamine is thought to be synthesized by two alternative pathways, one involving the first four enzymes of the purine pathway and a second that can function independently of the purine pathway. Insertion mutations in purG and purl prevent thiamine synthesis through the alternative pyrimidine biosynthetic (APB) pathway under aerobic but not anaerobic growth conditions. In contrast, point mutations in purG and purl caused one of three distinct phenotypes: Pur− Apb−, Pur− Apb+, or Pur+ Apb−. Analysis of these three mutant classes demonstrated two genetically separable functions for PurG and PurI in thiamine synthesis. In addition to their known enzymatic role in de novo purine synthesis, we propose that PurG and PurI play a novel, possibly nonenzymatic role in the APB pathway. Suppression analysis of Pur− Apb− mutants identified two new genetic loci involved in the APB pathway, apbB and apbD. We show here that mutations in apbB and apbD cause distinct, allele-specific suppression of the thiamine requirement of purG and purl mutants. Our results suggest that PurG and PurI and one or more components of the APB pathway may function as a complex needed for aerobic function of the APB pathway.

scholarly journals Acute Peritonitis Caused by Propionibacterium Acnes in a Peritoneal Dialysis Patient

2017 ◽  
Vol 15 (1) ◽  
pp. 33-34
Author(s):  
Nikolina Basic-Jukic ◽  
Vesna Furic-Cunko ◽  
Ivana Juric ◽  
Lea Katalinic ◽  
Ana Rukavina ◽  
...  
Keyword(s):  
Peritoneal Dialysis ◽  
Human Skin ◽  
Dialysis Patient ◽  
Propionibacterium Acnes ◽  
Peritoneal Dialysis Patient ◽  
Growth Conditions ◽  
Anaerobic Growth ◽  
Gram Positive ◽  
Acute Peritonitis ◽  
Clinical Conditions

AbstractPropionibacterium acnes is a gram-positive human skin commensal that is involved in the pathogenesis of acne and prefers anaerobic growth conditions. It has been considered as a low virulence pathogen in different clinical conditions. We present the case of acute peritonitis caused by Propionibacterium acnes in a peritoneal dialysis patient.

scholarly journals Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth

2020 ◽  
Author(s):  
Colton J. Lloyd ◽  
Jonathan Monk ◽  
Laurence Yang ◽  
Ali Ebrahim ◽  
Bernhard O. Palsson
Keyword(s):  
Amino Acids ◽  
Growth Conditions ◽  
Anaerobic Growth ◽  
Metabolic Phenotype ◽  
E Coli ◽  
Scale Models ◽  
Protein Components ◽  
K 12 ◽  
Genome Scale ◽  
Prosthetic Groups

AbstractSustaining a robust metabolic network requires a balanced and fully functioning proteome. In addition to amino acids, many enzymes require cofactors (coenzymes and engrafted prosthetic groups) to function properly. Extensively validated genome-scale models of metabolism and gene expression (ME-models) have the unique ability to compute an optimal proteome composition underlying a metabolic phenotype, including the provision of all required cofactors. Here we use the ME-model for Escherichia coli K-12 MG1655 to computationally examine how environmental conditions change the proteome and its accompanying cofactor usage. We found that: (1) The cofactor requirements computed by the ME model mostly agree with the standard biomass objective function used in models of metabolism alone (M models); (2) ME-model computations reveal non-intuitive variability in cofactor use under different growth conditions; (3) An analysis of ME-model predicted protein use in aerobic and anaerobic conditions suggests an enrichment in the use of prebiotic amino acids in the proteins used to sustain anaerobic growth (4) The ME-model could describe how limitation in key protein components affect the metabolic state of E. coli. Genome-scale models have thus reached a level of sophistication where they reveal intricate properties of functional proteomes and how they support different E. coli lifestyles.

scholarly journals The Anaerobic Regulatory Network Required for Pseudomonas aeruginosa Nitrate Respiration

2007 ◽  
Vol 189 (11) ◽  
pp. 4310-4314 ◽  
Author(s):  
Kerstin Schreiber ◽  
Robert Krieger ◽  
Beatrice Benkert ◽  
Martin Eschbach ◽  
Hiroyuki Arai ◽  
...  
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Dna Bending ◽  
Regulatory Gene ◽  
Regulatory System ◽  
Growth Conditions ◽  
Anaerobic Growth ◽  
Nitrate Respiration ◽  
Genetic Response ◽  
Anaerobic Conditions ◽  
Regulatory Model

ABSTRACT In Pseudomonas aeruginosa, the narK 1 K 2 GHJI operon encodes two nitrate/nitrite transporters and the dissimilatory nitrate reductase. The narK 1 promoter is anaerobically induced in the presence of nitrate by the dual activity of the oxygen regulator Anr and the N-oxide regulator Dnr in cooperation with the nitrate-responsive two-component regulatory system NarXL. The DNA bending protein IHF is essential for this process. Similarly, narXL gene transcription is enhanced under anaerobic conditions by Anr and Dnr. Furthermore, Anr and NarXL induce expression of the N-oxide regulator gene dnr. Finally, NarXL in cooperation with Dnr is required for anaerobic nitrite reductase regulatory gene nirQ transcription. A cascade regulatory model for the fine-tuned genetic response of P. aeruginosa to anaerobic growth conditions in the presence of nitrate was deduced.

scholarly journals Overexpression of WAX INDUCER1/SHINE1 Gene Enhances Wax Accumulation under Osmotic Stress and Oil Synthesis in Brassica napus

2019 ◽  
Vol 20 (18) ◽  
pp. 4435 ◽  
Author(s):  
Ning Liu ◽  
Jie Chen ◽  
Tiehu Wang ◽  
Qing Li ◽  
Pengpeng Cui ◽  
...  
Keyword(s):  
Salt Stress ◽  
Brassica Napus ◽  
De Novo ◽  
Normal Growth ◽  
Acid Synthesis ◽  
Growth Conditions ◽  
Lipid Profiling ◽  
Intracellular Lipids ◽  
Oil Synthesis ◽  
Genes Encoding

WAX INDUCER1/SHINE1 (WIN1) belongs to the AP2/EREBP transcription factor family and plays an important role in wax and cutin accumulation in plants. Here we show that BnWIN1 from Brassica napus (Bn) has dual functions in wax accumulation and oil synthesis. Overexpression (OE) of BnWIN1 led to enhanced wax accumulation and promoted growth without adverse effects on oil synthesis under salt stress conditions. Lipid profiling revealed that BnWIN1-OE plants accumulated more waxes with elevated C29-alkanes, C31-alkanes, C28-alcohol, and C29-alcohol relative to wild type (WT) under salt stress. Moreover, overexpression of BnWIN1 also increased seed oil content under normal growth conditions. BnWIN1 directly bound to the promoter region of genes encoding biotin carboxyl carrier protein 1 (BCCP1), glycerol-3-phosphate acyltransferase 9 (GPAT9), lysophosphatidic acid acyltransferase 5 (LPAT5), and diacylglycerol acyltransferase 2 (DGAT2) involved in the lipid anabolic process. Overexpression of BnWIN1 resulted in upregulated expression of numerous genes involved in de novo fatty acid synthesis, wax accumulation, and oil production. The results suggest that BnWIN1 is a transcriptional activator to regulate the biosynthesis of both extracellular and intracellular lipids.

scholarly journals Identification and Characterization ofMAE1, the Saccharomyces cerevisiae Structural Gene Encoding Mitochondrial Malic Enzyme

1998 ◽  
Vol 180 (11) ◽  
pp. 2875-2882 ◽  
Author(s):  
Eckhard Boles ◽  
Patricia de Jong-Gubbels ◽  
Jack T. Pronk
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Enzyme Activity ◽  
Pyruvate Kinase ◽  
Malic Enzyme ◽  
Fold Increase ◽  
Growth Conditions ◽  
Anaerobic Growth ◽  
Oxidative Decarboxylation ◽  
Mrna Levels ◽  
Malic Enzyme Activity

ABSTRACT Pyruvate, a precursor for several amino acids, can be synthesized from phosphoenolpyruvate by pyruvate kinase. Nevertheless, pyk1 pyk2 mutants of Saccharomyces cerevisiae devoid of pyruvate kinase activity grew normally on ethanol in defined media, indicating the presence of an alternative route for pyruvate synthesis. A candidate for this role is malic enzyme, which catalyzes the oxidative decarboxylation of malate to pyruvate. Disruption of open reading frame YKL029c, which is homologous to malic enzyme genes from other organisms, abolished malic enzyme activity in extracts of glucose-grown cells. Conversely, overexpression ofYKL029c/MAE1 from the MET25 promoter resulted in an up to 33-fold increase of malic enzyme activity. Growth studies with mutants demonstrated that presence of either Pyk1p or Mae1p is required for growth on ethanol. Mutants lacking both enzymes could be rescued by addition of alanine or pyruvate to ethanol cultures. Disruption of MAE1 alone did not result in a clear phenotype. Regulation of MAE1 was studied by determining enzyme activities and MAE1 mRNA levels in wild-type cultures and by measuring β-galactosidase activities in a strain carrying a MAE1::lacZ fusion. Both in shake flask cultures and in carbon-limited chemostat cultures,MAE1 was constitutively expressed. A three- to fourfold induction was observed during anaerobic growth on glucose. Subcellular fractionation experiments indicated that malic enzyme in S. cerevisiae is a mitochondrial enzyme. Its regulation and localization suggest a role in the provision of intramitochondrial NADPH or pyruvate under anaerobic growth conditions. However, since null mutants could still grow anaerobically, this function is apparently not essential.

Regulation of the Synthesis of Ribulose-l,5-bisphosphate Carboxylase and Its Subunits in the Flagellate Chlorogonium elongatum. II. Coordinated Synthesis of the Large and Small Subunits

1981 ◽  
Vol 36 (11-12) ◽  
pp. 942-950 ◽  
Author(s):  
Peter Westhoff ◽  
Kurt Zimmermann ◽  
Frank Boege ◽  
Klaus Zetsche
Keyword(s):  
Rna Synthesis ◽  
De Novo ◽  
Fold Increase ◽  
Growth Conditions ◽  
Autotrophic Growth ◽  
De Novo Synthesis ◽  
Bisphosphate Carboxylase ◽  
Unicellular Green Alga ◽  
Protein And Rna Synthesis ◽  
Ribulosebisphosphate Carboxylase

Abstract Transfer of heterotrophically grown cells of the unicellular green alga Chlorogonium elongatum to autotrophic growth conditions causes a 10 -15 fold increase in the amount of the chloroplastic enzyme ribulose-1,5-bisphosphate carboxylase. This increase was found to be due to de novo synthesis. The relative proportions of large and small subunits of the enzyme do not change. Their ratio is close to 3.4, the proportions in weight of the two subunits in the holoenzyme. Continous labelling with [35S]sulfate reveals that the ratios of incorporation into large and small subunits are essentially the same in autotrophic and heterotrophic cells. Pulse-chase experiments show that the subunits are degraded synchronously. The coordinated subunit synthesis cannot be uncoupled using inhibitors of protein and RNA synthesis or high temperature of cultivation of the alga. The results suggests a very tightly coordinated synthesis of the large and small subunits of ribulosebisphosphate carboxylase.

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