scholarly journals Whole-Genome Sequencing of Klebsiella pneumoniae BASUSDALSc45PDB48, a Unique Strain Capable of Growing in Pesticide-Containing Medium, Isolated from Soil in Bangladesh

2021 ◽  
Vol 10 (49) ◽  
Author(s):  
Md Atikur Rahman ◽  
Sadiya Tahsin ◽  
Salek Ahmed Sajib ◽  
Mohammad Tanbir Habib ◽  
Khaled Mahmud Sujon ◽  
...  
Keyword(s):  
Carbon Source ◽  
Klebsiella Pneumoniae ◽  
Genome Sequencing ◽  
Genome Assembly ◽  
Contaminated Soil ◽  
Draft Genome ◽  
Gc Content ◽  
Whole Genome ◽  
Content Type ◽  
Unique Strain

We report the draft genome sequence of Klebsiella pneumoniae strain BASUSDALSc45PDB48, isolated from pesticide-contaminated soil; this strain showed the ability to grow in a medium with cypermethrin as the only carbon source. The genome assembly comprised 5,249,704 bp, with 128.17 Ns per 100 kbp, an N 50 value of 5,035,968 bp, a GC content of 57.57%, and 5,349 annotated genes.

scholarly journals Draft Genome Sequence of Clostridium sp. Strain chh4-2 Isolated from Human Feces

2018 ◽  
Vol 6 (8) ◽  
Author(s):  
Chien-Hsun Huang ◽  
Jong-Shian Liou ◽  
Chun-Lin Wang ◽  
Lina Huang
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Fecal Sample ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Human Feces ◽  
Content Type ◽  
Old Adult

ABSTRACT Here, we report the draft genome sequence of a Clostridium sp. strain isolated from a fecal sample of a 34-year-old adult male in Taiwan. This strain may represent a new bacterium, as suggested by a comparison based on whole-genome sequencing. The genome assembly comprised 6,089,737 bp, with a 45.63% G+C content.

scholarly journals Draft Genome Sequences of Lactobacillus salivarius A3iob and Lactobacillus johnsonii CRL1647, Novel Potential Probiotic Strains for Honeybees (Apis mellifera L.)

2018 ◽  
Vol 7 (6) ◽  
Author(s):  
Marcela Carina Audisio ◽  
Leonardo Albarracín ◽  
Maria Julia Torres ◽  
Lucila Saavedra ◽  
Elvira Maria Hebert ◽  
...  
Keyword(s):  
Apis Mellifera ◽  
Genome Sequencing ◽  
Draft Genome ◽  
Illumina Miseq ◽  
Whole Genome ◽  
Genome Sequences ◽  
Lactobacillus Johnsonii ◽  
Lactobacillus Salivarius ◽  
Content Type ◽  
Probiotic Strains

This report describes the draft genome sequences of Lactobacillus salivarius A3iob and Lactobacillus johnsonii CRL1647, probiotic strains isolated from the gut of honeybee Apis mellifera workers. The reads were generated by a whole-genome sequencing (WGS) strategy on an Illumina MiSeq sequencer and were assembled into contigs with total sizes of 2,054,490 and 2,137,413 bp for the A3iob and CRL1647 strains, respectively.

scholarly journals Draft Genome Sequence of Helicobacter cinaedi, Compiled by Direct Whole-Genome Sequencing of a Blood Culture-Positive Isolate in Hong Kong

2018 ◽  
Vol 7 (18) ◽  
Author(s):  
Wai-Sing Chan ◽  
Chun-Hang Au ◽  
Henry Chi-Ming Leung ◽  
Dona N. Ho ◽  
Tsun-Leung Chan ◽  
...  
Keyword(s):  
Blood Culture ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Positive Blood Culture ◽  
Draft Genome ◽  
Whole Genome ◽  
Content Type ◽  
Helicobacter Cinaedi ◽  
Positive Isolate ◽  
Timely Treatment

Isolation of Helicobacter cinaedi from a positive blood culture requires prolonged and stringent subculture conditions. Direct whole-genome sequencing (WGS) of a positive blood culture may provide timely treatment-associated genetic information.

scholarly journals Whole-Genome Sequencing of Nontyphoidal Salmonella enterica Isolates Obtained from Various Meat Types in Ghana

2019 ◽  
Vol 8 (15) ◽  
Author(s):  
Moon Y. F. Tay ◽  
Frederick Adzitey ◽  
Stella Amelia Sultan ◽  
Joseph Makija Tati ◽  
Kelyn L. G. Seow ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Salmonella Enterica ◽  
Draft Genome ◽  
Protein Source ◽  
Whole Genome ◽  
Genome Sequences ◽  
Content Type ◽  
Important Protein ◽  
Retail Meats

Here, we report the draft genome sequences of 16 nontyphoidal Salmonella enterica isolates obtained from locally produced meats in Tamale, Ghana, which are commonly consumed by most natives as an important protein source. The draft genomes will help provide a molecular snapshot of Salmonella enterica isolates found in these retail meats in Tamale.

scholarly journals Whole-Genome Sequencing Confirms the Coexistence of Different Colonizing Group B Streptococcus Isolates Underscored by CRISPR Typing

2020 ◽  
Vol 9 (5) ◽  
Author(s):  
Clémence Beauruelle ◽  
Maxime Branger ◽  
Thierry Cochard ◽  
Adeline Pastuszka ◽  
Franck Biet ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Draft Genome ◽  
Group B Streptococcus ◽  
Whole Genome ◽  
Industrialized Countries ◽  
Genome Sequences ◽  
Neonatal Infections ◽  
Content Type ◽  
Phylogenetic Affiliation ◽  
Group B

Streptococcus agalactiae is a major pathogen and is the leading cause of neonatal infections in industrialized countries. The diversity of strains isolated from two pregnant women was investigated. Here, we present the draft genome sequences of strains W8A2, W8A6, W10E2, and W10F3, obtained in order to ascertain their phylogenetic affiliation.

scholarly journals Whole-Genome Sequencing of Mycobacterium tilburgii Strain MEPHI

2019 ◽  
Vol 8 (40) ◽  
Author(s):  
Jamal Saad ◽  
Michel Drancourt ◽  
Margaret M. Hannan ◽  
Patrick J. Stapleton ◽  
Simon Grandjean Lapierre
Keyword(s):  
Whole Genome Sequencing ◽  
Clinical Isolate ◽  
Genome Sequencing ◽  
Gc Content ◽  
Whole Genome ◽  
Content Type ◽  
Phylogenetic Placement ◽  
Mycobacterium Simiae

Mycobacterium tilburgii is a fastidious mycobacterium which has previously been reported to cause severe disseminated infections. Genome sequencing of the M. tilburgii MEPHI clinical isolate yielded 3.14 Mb, with 66.3% GC content, and confirmed phylogenetic placement within the Mycobacterium simiae complex.

scholarly journals Draft Genome Sequence of a blaNDM-1- and blaPME-1-Harboring Pseudomonas aeruginosa Clinical Isolate from Pakistan

2019 ◽  
Vol 8 (17) ◽  
Author(s):  
Sidra Irum ◽  
Robert F. Potter ◽  
Rubina Kamran ◽  
Zeeshan Mustafa ◽  
Meghan A. Wallace ◽  
...  
Keyword(s):  
Cystic Fibrosis ◽  
Pseudomonas Aeruginosa ◽  
Genome Sequencing ◽  
Draft Genome ◽  
Whole Genome ◽  
Beta Lactamase ◽  
Content Type ◽  
Extended Spectrum Beta Lactamase ◽  
Carbapenem Resistant ◽  
Airway Colonization

We performed Illumina whole-genome sequencing on a carbapenem-resistant Pseudomonas aeruginosa strain isolated from a cystic fibrosis patient with chronic airway colonization. The draft genome comprises 6,770,411 bp, including the carbapenemase bla NDM-1 and the extended-spectrum beta-lactamase bla PME-1.

scholarly journals Draft Genome Sequence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Strain from a Returned Traveler from Pakistan

2020 ◽  
Vol 9 (31) ◽  
Author(s):  
Samantha Hao ◽  
Tess Veuthey ◽  
Saharai Caldera ◽  
Paula Hayakawa Serpa ◽  
Barbara Haller ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Salmonella Enterica ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Drug Resistant ◽  
Content Type ◽  
Salmonella Enterica Serovar Typhi ◽  
Extensively Drug Resistant

ABSTRACT We report a draft genome sequence of extensively drug-resistant (XDR) Salmonella enterica serotype Typhi isolated from a returned traveler from Pakistan who developed sepsis. Whole-genome sequencing revealed relatedness to a previously reported outbreak in Pakistan and identified the blaCTX-M-15 and qnrS resistance genes.

scholarly journals Draft Genome Sequence of a Mycobacterium porcinum Strain Isolated from a Pet Cat with Atypical Mycobacterial Panniculitis

2020 ◽  
Vol 9 (11) ◽  
Author(s):  
Anthony Mannion ◽  
Tina McCollester ◽  
Alexander Sheh ◽  
Zeli Shen ◽  
Hilda Holcombe ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Fast Growing

A fast-growing Mycobacterium species was cultured from draining, purulent lesions on the caudal abdomen of a 12-year-old male domestic long-haired cat. Whole-genome sequencing identified the organism as Mycobacterium porcinum.

scholarly journals Draft Genome Sequence of Salirhabdus euzebyi Strain Q1438

2020 ◽  
Vol 9 (18) ◽  
Author(s):  
Rita Zgheib ◽  
Hussein Anani ◽  
Didier Raoult ◽  
Pierre-Edouard Fournier
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Bacterial Isolate ◽  
Draft Genome ◽  
Sea Salt ◽  
Whole Genome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Rna Genes

In 2007, Salirhabdus euzebyi was first described as a bacterial isolate from a sea salt evaporation pond. As no genome sequence was previously available for this species, we performed whole-genome sequencing. The chromosome of strain Q1438 was 3,784,443 bp long with 36% G+C content, 3,830 protein-coding genes, and 74 RNA genes.

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