Evolutionary pattern of the presence and absence genes in Fragaria species

2021 ◽  
Author(s):  
Yan Zhong ◽  
Ping Wang ◽  
Qinglong Shi ◽  
Zong-Ming Cheng
Keyword(s):  
Ecological Factors ◽  
Evolutionary Pattern ◽  
Ppr Protein ◽  
Ef Hand ◽  
In The Wild ◽  
Wild Strawberry ◽  
Cultivated Species ◽  
Presence And Absence ◽  
Genome Level ◽  
Tandem Duplications

Presence and absence polymorphisms (PAPs) exist extensively and have been investigated in different organisms. However, PAPs have rarely been detected between strawberry species at the genome level. This study identified the presence and absence genes (P/A genes) between wild strawberry species (Fragaria vesca) and octoploid cultivated species (F. × ananassa) under a relatively strict criterion. In total, 333 P/A genes present in the wild strawberry but absent in the cultivated strawberry were detected. Of the P/A genes, 91.89% (306/333) were single genes, and only 8.11% were confirmed as multi-genes. The majority of the identified P/A genes in Fragaria were generated by tandem duplications. The P/A genes were unevenly distributed on the seven chromosomes of woodland strawberry, and they clustered preferentially near the telomeric regions of the chromosomes. The P/A genes tended to encode proteins with domains closely associated with responses to varying ecological factors, such as PPR, Protein kinases (PKs), NB-ARC, F-box and EF-hand domains. This indicated that the P/A genes were associated with coping with biotic and abiotic stresses to improve the adaptability of plants to changing environments.

scholarly journals Group size and aquatic vegetation modulates male preferences for female shoals in wild zebrafish, Danio rerio

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Aditya Ghoshal ◽  
Anuradha Bhat
Keyword(s):  
Group Size ◽  
Aquatic Vegetation ◽  
Natural Habitat ◽  
Ecological Factors ◽  
Choice Test ◽  
Female Group ◽  
Aquatic Flora ◽  
In The Wild ◽  
The Individual

AbstractShoaling decisions in the wild are determined by a combination of innate preferences of the individual along with the interplay of multiple ecological factors. In their natural habitat as well as in the laboratory, zebrafish is a shoaling fish. Here, we investigate the role of group size and associated vegetation in shaping shoaling preferences of wild male zebrafish. We studied the association preference of males to groups of female shoals in a multi-choice test design. We found that males made greater proportion of visits to an 8-female group compared to 2 and 4-female groups. However, males spent similar proportions of time across the three female-containing groups. When artificial vegetation was incorporated along with female number as an additional factor, we found that males prefer high and moderately vegetated patches compared to low or no-vegetation groups, irrespective of the number of females in these patches. Based on experiments using a novel multi-choice design, our results show that preference for group size can change due to interaction of two separate factors. This work is a first attempt to understand the role of aquatic flora in determining shoaling preferences in zebrafish, using an experimental paradigm consisting of a gradation in female and vegetation densities.

scholarly journals Screening of Wild Strawberry Genotypes against Iron Deficiency under Greenhouse Conditions

2013 ◽  
Vol 41 (2) ◽  
pp. 560 ◽  
Author(s):  
Ayfer Alkan TORUN ◽  
Nazife ERDEM ◽  
Yildiz AKA KACAR ◽  
Sedat SERCE
Keyword(s):  
Dry Matter ◽  
Fe Deficiency ◽  
High Genetic Diversity ◽  
Breeding Programs ◽  
Deficiency Symptom ◽  
Wild Strawberry ◽  
Cultivated Species ◽  
Use Efficiency ◽  
Different Response ◽  
Spad Meter

The cultivated strawberry Fragaria × ananassa Duch. is the natural hybrid of F. chiloensis (L.) Mill. and F. virginiana Mill. The progenitor species have high genetic diversity compared with the cultivated genotypes; therefore, the use of wild relative in F. chiloensis breeding could provide a good for broadening the available genetic variations of cultivated species. In present study, 13 genotypes selected from strawberry super core collection were tested under Fe (-) and Fe (+) conditions for their response against Fe deficiency conditions in a growth medium (GM) (soil + sand + perlite), potentially able to simulate the actual GM in nature. SPAD-meter readings indicating chlorophyll levels of the leaf, shoot dry matter yield, Fe-efficiency rate, shoot total and active Fe concentrations were determined to evaluate the resistance levels of strawberry genotypes against Fe deficiency. Results of this study indicated that different response for strawberry subspecies and genotypes of the same subspecies grown in GM against Fe deficiency. Symptom for Fe deficiency of genotypes varied between 1-5, SPAD-meter readings 3, shoot dry matter yields and shoot Fe concentrations varied between 6.5-38, 1.02-6.06 g plant-1 and 41.8-233.1 mg kg-1 respectively. Iron-efficiencies of genotypes were found between 58–98%. Strawberry subspecies, F. virginiana spp. glauca, F. chiloensis ssp. chiloensis and F. chiloensis ssp. pacifica showed Fe-efficiency values of 93.8, 79.5 and 79.1% respectively. We concluded that shoot growth performance, Fe intake from GM, transfer of Fe from roots to shoots, shoot Fe-use efficiency, Fe deficiency symptom levels and SPAD-meter readings indicating chlorophyll levels were significant parameters to evaluate the resistance of strawberry genotypes against Fe deficiency. The most Fe-efficient genotypes belonging to F. virginiana spp. glauca could be used in breeding programs aiming at developing new strawberry genotypes suitable for growing under Fe deficient conditions.

scholarly journals Orchid Reintroduction Based on Seed Germination-Promoting Mycorrhizal Fungi Derived From Protocorms or Seedlings

2021 ◽  
Vol 12 ◽  
Author(s):  
Da-Ke Zhao ◽  
Marc-André Selosse ◽  
Limin Wu ◽  
Yan Luo ◽  
Shi-Cheng Shao ◽  
...  
Keyword(s):  
Seed Germination ◽  
Mycorrhizal Fungi ◽  
Essential Element ◽  
Ecological Factors ◽  
New Approach ◽  
Practical Procedure ◽  
In The Wild ◽  
Orchid Mycorrhizal Fungi ◽  
Ecological Specificity

Orchids are among the most endangered in the plant kingdom. Lack of endosperm in their seeds renders orchids to depend on nutrients provided by orchid mycorrhizal fungi (OMF) for seed germination and seedling formation in the wild. OMF that parasitize in germination seeds is an essential element for orchid seedling formation, which can also help orchid reintroduction. Considering the limitations of the previous orchid reintroduction technology based on seed germination-promoting OMF (sgOMF) sourced from orchid roots, an innovative approach is proposed here in which orchid seeds are directly co-sown with sgOMF carrying ecological specificity from protocorms/seedlings. Based on this principle, an integrative and practical procedure concerning related ecological factors is further raised for re-constructing long-term and self-sustained orchid populations. We believe that this new approach will benefit the reintroduction of endangered orchids in nature.

scholarly journals Determinants of differences in the activity budgets of Rhinopithecus bieti by age/sex class at Xiangguqing in the Baimaxueshan nature reserve, China

2015 ◽  
Vol 67 (2) ◽  
pp. 675-683 ◽  
Author(s):  
Yanhong Li ◽  
Dayong Li ◽  
Baoping Ren ◽  
Jie Hu ◽  
Baoguo Li ◽  
...  
Keyword(s):  
Nature Reserve ◽  
Reproductive Investment ◽  
Ecological Factors ◽  
Developmental Differences ◽  
Adult Males ◽  
Activity Budgets ◽  
Rhinopithecus Bieti ◽  
Adult Females ◽  
Class 1 ◽  
In The Wild

Ecological factors are known to influence the activity budgets of Yunnan snub-nosed monkeys (Rhinopithecus bieti). However, little is known about how activity budgets vary between age/sex classes, because the species is difficult to observe in the wild. This study provides the first detailed activity budgets subdivided by age/sex classes based on observations of the largest habituated group at Xiangguqing in Baimaxueshan Nature Reserve. This study was conducted from June 2008 to May 2009. We found that adult females spent more time feeding (44.8%) than adult males (39.5%), juveniles (39.1%), and infants (14.2%). Adult males allocated more time to miscellaneous activities (12.5%) than did adult females (3.8%). Infants were being groomed 6.9% of the time, which was the highest proportion among all age/sex classes. Adults spent more time feeding, while immature individuals allocated more time to moving and other activities. There are several reasons activity budgets may vary by age/sex class: 1) differential reproductive investment between males and females; 2) developmental differences among the age categories; 3) social relationships between members of different age/sex classes, particularly dominance. In addition, group size and adult sex ratio may also impact activity budgets. These variations in activity budgets among the different age/sex classes may become a selective pressure that shapes the development and growth pattern in this species. <br><br><font color="red"><b> This article has been retracted. Link to the retraction <u><a href="http://dx.doi.org/10.2298/ABS160112009E">10.2298/ABS160112009E</a><u></b></font>

scholarly journals Comparative Study of Ovule Development between Wild (Passiflora foetida L.) and Cultivated (P. edulis Sims) Species of Passiflora L. Provide Insights into Its Differential Developmental Patterns

2021 ◽  
Vol 2 (3) ◽  
pp. 502-516
Author(s):  
Archa Vijay ◽  
Ashifa Nizam ◽  
Arun Madasseril Radhakrishnan ◽  
Thattantavide Anju ◽  
Arun Kumar Kashyap ◽  
...  
Keyword(s):  
Wall Thickness ◽  
Pollen Morphology ◽  
Crop Improvement ◽  
Ovary Wall ◽  
Ovule Development ◽  
Wild Type ◽  
In The Wild ◽  
Cultivated Species ◽  
Improvement Programs ◽  
Passiflora Foetida

The ovules inside the ovary of a plant are the precursors of seeds and they are important for the perpetuation of the plants. The genus Passiflora L., produce fruits with numerous seeds and they have economic and medicinal value. The edible portion of the Passiflora are the seeds surrounded by pulp. Being the edible parts of a fruit, it is important to investigate the early development of ovules in Passiflora that lead to the formation of seeds after pollination. Wild relatives of the domesticated crops are increasingly being investigated for possible genetic resources that can be used for crop improvement programs. The present study was designed to investigate the comparative ovule development between a wild (Passiflora foetida L.) and a cultivated (Passiflora edulis Sims) species of Passiflora with an aim that it may provide important information about the common and diverging regulatory mechanisms during ovule development between the wild and the cultivated species. We also investigated the pollen morphology between the wild and cultivated species using light and scanning electron microscopy. Our results show that wild type P. foetida ovule growth is faster when compared with that of cultivated P. edulis. Furthermore, wild species harbour ovules of large size (0.14 mm2) but less in number (6) as compared to cultivated ones which show smaller size (0.05 mm2) of ovules but relatively more in number (21). The differences in ovary wall thickness were also stark between the two species. The ovary wall thickness was 0.10 mm in the wild type whereas it was 0.74 mm in cultivated species. Notable differences were also observed in diameter where the wild type (2.45 mm) reported smaller diameter than cultivated species (3.25 mm). We observed little difference in the pollen morphology between the two species.

Bonobos, chimpanzees and tools: Integrating species-specific psychological biases and socio-ecology

2018 ◽  
Author(s):  
Josep Call
Keyword(s):  
Tool Use ◽  
Cognitive Abilities ◽  
Ecological Factors ◽  
Striking Difference ◽  
Personality Profiles ◽  
Il Y A ◽  
In The Wild ◽  
The Difference ◽  
Species Specific

Over the years there has been some controversy regarding the comparison between chimpanzees and bonobos. Whereas some authors have stressed their differences, others have stressed their similarities. One striking difference between wild chimpanzees and bonobos is tool use, especially in foraging contexts. While several chimpanzee populations possess tool kits formed by multiple tools (and their associated techniques) to exploit embedded resources, bonobos display no such tool specialization. However, studies in the laboratory have shown that bonobos are perfectly capable of using tools. In fact, several studies devoted to investigate the cognitive abilities underlying tool use have failed to detect any substantial differences between the two species. This chapter explores three aspects that could explain the difference between chimpanzees and bonobos in their propensity to use tools in the wild: socio-ecological factors, social versus technical cognition, and personality profiles. Au cours du temps, il y a eu beaucoup de controverse en relation aux comparaisons entres les chimpanzés et les bonobos. Alors que certains auteurs ont stressé les différences entre eux, d’autres ont stressé les similarités. Une grande différence entre les chipmanzés et les bonobos sauvages est l’utilisation des outils, spécialement en butinage. Tandis que plusieurs populations de chimpanzés possèdent des boîtes à outils diverses (et leur techniques respectives) pour exploiter les ressources, les bonobos ne montrent pas une spécialisation pareille. Cependant, les études en laboratoir ont montré que les bonobos sont capables d’utiliser des outils. En faite, plusieurs études des facultés cognitives dans l’utilisation des outils n’ont pas pu détecter de différences substantielles entre les deux espèces. Je vais explorer trois aspects qui pourraient expliquer les différences entre les chimpanzés et les bonobos en ce qui concerne leur tendance naturelle à utiliser les outils: facteurs socio-écologiques, cognition social vs. technique, et profils de personnalité.

scholarly journals Mutation in TERMINAL FLOWER1 Reverses the Photoperiodic Requirement for Flowering in the Wild Strawberry Fragaria vesca

2012 ◽  
Vol 159 (3) ◽  
pp. 1043-1054 ◽  
Author(s):  
Elli A. Koskela ◽  
Katriina Mouhu ◽  
Maria C. Albani ◽  
Takeshi Kurokura ◽  
Marja Rantanen ◽  
...  
Keyword(s):  
Fragaria Vesca ◽  
In The Wild ◽  
Wild Strawberry

scholarly journals Video demonstrations seed alternative problem-solving techniques in wild common marmosets

2014 ◽  
Vol 10 (9) ◽  
pp. 20140439 ◽  
Author(s):  
Tina Gunhold ◽  
Andrew Whiten ◽  
Thomas Bugnyar
Keyword(s):  
Problem Solving ◽  
Social Learning ◽  
Field Experiment ◽  
Ecological Factors ◽  
The Other ◽  
Field Conditions ◽  
Common Marmosets ◽  
Video Images ◽  
Artificial Fruit ◽  
In The Wild

Studies of social learning and tradition formation under field conditions have recently gained momentum, but suffer from the limited control of socio-ecological factors thought to be responsible for transmission patterns. The use of artificial visual stimuli is a potentially powerful tool to overcome some of these problems. Here, in a field experiment, we used video images of unfamiliar conspecifics performing virtual demonstrations of foraging techniques. We tested 12 family groups of wild common marmosets. Six groups received video demonstrations (footage of conspecifics either pulling a drawer open or pushing a lid upwards, in an ‘artificial fruit’); the other six groups served as controls (exposed to a static image of a conspecific next to the fruit). Subjects in video groups were more manipulative and successful in opening the fruit than controls; they were also more likely to use the technique they had witnessed and thus could serve as live models for other family members. To our knowledge, this is the first study that used video demonstrations in the wild and demonstrated the potent force of social learning, even from unfamiliar conspecifics, under field conditions.

Chromosome banding patterns in the annual species of Cicer

Genome ◽  
1994 ◽  
Vol 37 (4) ◽  
pp. 656-663 ◽  
Author(s):  
R. I. Tayyar ◽  
A. J. Lukaszewski ◽  
J. G. Waines
Keyword(s):  
Haploid Genome ◽  
Genome Length ◽  
Chromosome Identification ◽  
Annual Species ◽  
Banding Patterns ◽  
C Banding ◽  
In The Wild ◽  
Group Variation ◽  
Cultivated Species ◽  
Heterochromatin Content

Somatic karyotypes of the nine annual species of Cicer (2n = 16) were analyzed using C-banding. Highly significant differences in haploid genome length and C-band positive heterochromatin content were observed. The haploid genome length ranged from 20.0 μm in the wild species C. judaicum to 28.7 μm in the cultivated species C. arietinum, and significant differences for this character were observed between accessions within several species. Based on their heterochromatin content, the species were divided into two groups: low heterochromatin content (average of 41.7%), which included C. arietinum, C. chorassanicum, C. echinospermum, C. judaicum, C. pinnatifidum, C. reticulatum, and C. yamashitae, and high heterochromatin content (average of 59.5%), which included C. bijugum and C. cuneatum. Within-group variation for heterochromatin content was insignificant, while differences between groups were highly significant. There seemed to be a trend for reduction in C-heterochromatin content in the course of evolution in Cicer. In all species studied, C-bands were located proximally around the centromere with occasional bands in intercalary and distal positions. C-banding patterns allowed for chromosome identification and matching pairs of homologues in all species analyzed.Key words: C-banding, chickpea, heterochromatin, karyotype.

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