Soil quality and C-S-R fungal communities in monoculture plantations after conversion from subtropical forest

Intensive clear cutting of natural forests and conversion to monoculture plantations are ongoing worldwide, leading to degradation of soil quality and microbial functions. Here, we compared soil quality index (SQI) and fungal community in a natural forest (Forest) and four 5-year-old monoculture plantations, including Camellia oleifera (Oil), Amygdalus persica (Peach), Myrica rubra (Berry) and Cunninghamia lanceolata (Fir), in a subtropical region of China. After conversion, soil pH rose up to 0.31, but organic carbon, total nitrogen, sucrase, acid protease, glutaminase and phosphatase activities decreased by 83%, 59%, 43%, 31%, 64%, 66% and 77%, respectively, in the plantations. Correspondingly, the SQI dropped by 65%. High-throughput sequencing of the ITS1 region demonstrated an increase in α-diversity and a striking difference in β-diversity following conversion. Changes in the dominant fungal taxa following forest conversion to plantations was interpreted by Grime’s C-S-R life history framework. Conversion increased the fungal groups with stress-tolerant (S) and ruderal (R) strategies - mainly copiotrophic saprophytes, such as Ascomycota and Zygomycota, but decreased the fungal groups with competitor (C) strategies - mainly oligotrophic saprophytes and mycorrhizal fungi, such as Basidiomycota. Genera affiliated to those phyla including Pseudophialophora, Rhytisma increased, but Russula decreased. Redundancy analysis and structural equation modeling indicated that the diversity and composition of fungal communities changed with soil quality degradation, which were mainly driven by increased soil pH, decreased available carbon and nutrients (N, P), and related enzymes activities.

Roux-en-Y Gastric Bypass and Caloric Restriction but Not Gut Hormone-Based Treatments Profoundly Impact the Hypothalamic Transcriptome in Obese Rats

Background: The hypothalamus is an important brain region for the regulation of energy balance. Roux-en-Y gastric bypass (RYGB) surgery and gut hormone-based treatments are known to reduce body weight, but their effects on hypothalamic gene expression and signaling pathways are poorly studied. Methods: Diet-induced obese male Wistar rats were randomized into the following groups: RYGB, sham operation, sham + body weight-matched (BWM) to the RYGB group, osmotic minipump delivering PYY3-36 (0.1 mg/kg/day), liraglutide s.c. (0.4 mg/kg/day), PYY3-36 + liraglutide, and saline. All groups (except BWM) were kept on a free choice of high- and low-fat diets. Four weeks after interventions, hypothalami were collected for RNA sequencing. Results: While rats in the RYGB, BWM, and PYY3-36 + liraglutide groups had comparable reductions in body weight, only RYGB and BWM treatment had a major impact on hypothalamic gene expression. In these groups, hypothalamic leptin receptor expression as well as the JAK–STAT, PI3K-Akt, and AMPK signaling pathways were upregulated. No significant changes could be detected in PYY3-36 + liraglutide-, liraglutide-, and PYY-treated groups. Conclusions: Despite causing similar body weight changes compared to RYGB and BWM, PYY3-36 + liraglutide treatment does not impact hypothalamic gene expression. Whether this striking difference is favorable or unfavorable to metabolic health in the long term requires further investigation.

Stratospheric circulation trends in ERA5 reanalysis compared to climate models over 1960-2020

<p>The recent release of the long-term ERA5 reanalysis data spanning from 1950 to present offers new opportunities for analysing trends and variability of stratospheric dynamics. For the first time, a 60 year period (1960-2020) can be analysed in reanalysis data and compared with chemistry-climate model simulations. The analyses of stratospheric circulation trends and seasonalities over this long time period can help us to better understand the long-term evolution of the Brewer-Dobson circulation (BDC), and the related inter-model differences and model dependencies. Therefore, this way an improved credibility in future projections of the BDC can be obtained.<br />We find that the global trend patterns of the temperature, zonal wind and residual vertical velocity agrees well between ERA5 and the multi model mean. However, differences occur in the width and altitude of the maximum trend. The tropical upwelling mass flux time series in the lower stratosphere of models and reanalysis disagrees at the beginning of the period, but they converge after around 1980. The agreement of the time series increases with altitude, where the QBO dominates the signal. Moreover, we find a generally good agreement in the zonal wind trends, although some differences are detected in the subtropical jet strength and upward shift, as well as in the polar vortex region where the models exhibit larger changes than ERA5. Another striking difference is the temperature trend in the tropical upper troposphere/lower stratosphere, where models show a more extended warming trend into the lower stratosphere. In this presentation, we show these results, put them in relation to what had been shown in previous studies for other time periods and discuss possible explanations for the differences as well as implications for the further evolution of the BDC.</p>

Exploring the Irony in Japanese Popular Culture. A Cross-Cultural and Linguistic Analysis.

The present study addresses the status and use of irony in Japanese popular culture by closely examining its’ cultural variations on a corpus consisting of ironic utterances and situations from three popular culture media: Japanese drama, anime, and manga. While it is likely that Western popular culture abounds in ironic aesthetics and standpoints, the concept of “irony” faces cultural reconstruction within Japanese culture and society, a fact easily reflected in national media and cinematographic productions. In such cases, the cultural and linguistic distance between Japanese and English, and the striking difference, which exists between these two geographical and cultural contexts, increase the challenge interposed by the understanding and interpreting of irony. Moreover, on a conversational level, ironizing one’s communication partner is considered socially unacceptable and penalised accordingly. It stands against the much-expected politeness and traditional Japanese concepts such as “honne” and “tatemae,” which, if preserved, can create harmony in communication. In conclusion, the ambiguous definition of irony, together with the negative perception and reluctance of Japanese people towards its usage, has contributed to frequently branding irony strictly as a Western phenomenon. However, as the present research attempts to demonstrate, the usage of irony in Japanese popular culture embraces multifarious approaches, and it extends to reach the borders of semantics.

Bursting Rate Variability

In this paper, a new electromyographic phenomenon, referred to as Bursting Rate Variability (BRV), is reported. Not only does it manifest itself visually as a train of short periods of accrued surface electromyographic (sEMG) activity in the traces, but it has a deeper underpinning because the sEMG bursts are synchronous with wavelet packets in the D8 subband of the Daubechies 3 (db3) wavelet decomposition of the raw signal referred to as “D8 doublets”—which are absent during muscle relaxation. Moreover, the db3 wavelet decomposition reconstructs the entire sEMG bursts with two contiguous relatively high detail coefficients at level 8, suggesting a high incidence of two consecutive neuronal discharges. Most importantly, the timing between successive bursts shows some variability, hence the BRV acronym. Contrary to Heart Rate Variability (HRV), where the R-wave is easily identified, here, time-localization of the burst requires a statistical waveform matching between the “D8 doublet” and the burst in the raw sEMG signal. Furthermore, statistical fitting of the empirical distribution of return times shows a striking difference between control and quadriplegic subjects. Finally, the BRV rate appears to be within 60–88 bursts per minute on average among 9 human subjects, suggesting a possible connection between BRV and HRV.

Spin-Up from Rest of a Liquid Metal with Deformable Free Surface in a Cylinder under the Influence of a Uniform Axial Magnetic Field

Spin-up from rest of a liquid metal having deformable free surface in the presence of a uniform axial magnetic field is numerically studied. Both liquid and gas phases in a vertically mounted cylinder are assumed to be an incompressible, immiscible, Newtonian fluid. Since the viscous dissipation and the Joule heating are neglected, thermal convection due to buoyancy and thermocapillary effects is not taken into account. The effects of Ekman number and Hartmann number were computed with fixing the Froude number of 1.5, the density ratio of 800, and the viscosity ratio of 50. The evolutions of the free surface, three-component velocity field, and electric current density are portrayed using the level-set method and HSMAC method. When a uniform axial magnetic field is imposed, the azimuthal momentum is transferred from the rotating bottom wall to the core region directly through the Hartmann layer. This is the most striking difference from spin-up of the nonmagnetic case.

A new innovative real-time tracking method for flying insects applicable under natural conditions

Background Sixty percent of all species are insects, yet despite global efforts to monitor animal movement patterns, insects are continuously underrepresented. This striking difference between species richness and the number of species monitored is not due to a lack of interest but rather to the lack of technical solutions. Often the accuracy and speed of established tracking methods is not high enough to record behavior and react to it experimentally in real-time, which applies in particular to small flying animals. Results Our new method of real-time tracking relates to frequencies of solar radiation which are almost completely absorbed by traveling through the atmosphere. For tracking, photoluminescent tags with a peak emission (1400 nm), which lays in such a region of strong absorption through the atmosphere, were attached to the animals. The photoluminescent properties of passivated lead sulphide quantum dots were responsible for the emission of light by the tags and provide a superb signal-to noise ratio. We developed prototype markers with a weight of 12.5 mg and a diameter of 5 mm. Furthermore, we developed a short wave infrared detection system which can record and determine the position of an animal in a heterogeneous environment with a delay smaller than 10 ms. With this method we were able to track tagged bumblebees as well as hawk moths in a flight arena that was placed outside on a natural meadow. Conclusion Our new method eliminates the necessity of a constant or predictable environment for many experimental setups. Furthermore, we postulate that the developed matrix-detector mounted to a multicopter will enable tracking of small flying insects, over medium range distances (>1000m) in the near future because: a) the matrix-detector equipped with an 70 mm interchangeable lens weighs less than 380 g, b) it evaluates the position of an animal in real-time and c) it can directly control and communicate with electronic devices.

Hybrid Nanoparticles for Haloperidol Encapsulation: Quid Est Optimum?

The choice of drug delivery carrier is of paramount importance for the fate of a drug in a human body. In this study, we have prepared the hybrid nanoparticles composed of FDA-approved Eudragit L100-55 copolymer and polymeric surfactant Brij98 to load haloperidol—an antipsychotic hydrophobic drug used to treat schizophrenia and many other disorders. This platform shows good drug-loading efficiency and stability in comparison to the widely applied platforms of mesoporous silica (MSN) and a metal–organic framework (MOF). ZIF8, a biocompatible MOF, failed to encapsulate haloperidol, whereas MSN only showed limited encapsulation ability. Isothermal titration calorimetry showed that haloperidol has low binding with the surface of ZIF8 and MSN in comparison to Eudragit L100-55/Brij98, thus elucidating the striking difference in haloperidol loading. With further optimization, the haloperidol loading efficiency could reach up to 40% in the hybrid Eudragit L100-55/Brij98 nanoparticles with high stability over several months. Differential scanning calorimetry studies indicate that the encapsulated haloperidol stays in an amorphous state inside the Eudragit L100-55/Brij98 nanoparticles. Using a catalepsy and open field animal tests, we proved the prolongation of haloperidol release in vivo, resulting in later onset of action compared to the free drug.

Genome-wide association mapping of transcriptome variation in Mimulus guttatus indicates differing patterns of selection on cis- versus trans-acting mutations

We measured the floral bud transcriptome of 151 fully sequenced lines of Mimulus guttatus from one natural population. Thousands of single nucleotide polymorphisms (SNPs) are implicated as transcription regulators, but there is a striking difference in the Allele Frequency Spectrum (AFS) of cis-acting and trans-acting mutations. Cis-SNPs have intermediate frequencies (consistent with balancing selection) while trans-SNPs exhibit a rare-alleles model (consistent with purifying selection). This pattern only becomes clear when transcript variation is normalized on a gene-to-gene basis. If a global normalization is applied, as is typically in RNAseq experiments, asymmetric transcript distributions combined with “rarity disequilibrium” produce a super-abundance of false positives for trans-acting SNPs. To explore the cause of purifying selection on trans-acting mutations, we identified gene expression modules as sets of co-expressed genes. The extent to which trans-acting mutations influence modules is a strong predictor of allele frequency. Mutations altering expression of genes with high “connectedness” (those that are highly predictive of the representative module expression value) have the lowest allele frequency. The expression modules can also predict whole-plant traits such as flower size. We find that a substantial portion of the genetic (co)variance among traits can be described as an emergent property of genetic effects on expression modules.

Targeted Next Generation Sequencing Reveals a Third Breakpoint Cluster Region and New Partner Genes in the KMT2A Recombinome

Chromosomal rearrangements of the KMT2A gene are associated with acute leukemias and myelodysplastic syndromes. The large number of known KMT2A fusions (>100) renders a precise diagnosis a demanding task. More than 50% of all KMT2A partner genes have been analyzed at the DCAL, including the novel partner genes BCAS4, FAM13A, RANBP3, and STK4. Even though all KMT2A rearrangements are associated with high-risk acute leukemia, the outcome (poor or very poor) is influenced by the partner gene. So far, we have analyzed more than 3,200 patients positive for a KMT2A rearrangement. The breakpoints of these cases are located mainly in the major breakpoint cluster region (bcr1) and to a small extent in the recently described minor bcr (bcr2). A small number of breakpoints were also found outside of these two bcrs. Most of these patients were analyzed by long distance inverse (LDI)- or multiplex-PCR which only cover bcr1. More recently, we used targeted KMT2A-NGS with whole gene coverage in over 450 patients, which was initially applied selectively in patients negative by LDI- and multiplex-PCR and then used more widely. Within the KMT2A-NGS group, 410 patients had bcr1 breakpoints mainly between the KMT2A exons 7 and 13, while 46 patients bcr2 breakpoints mainly between exons 20 and 24. Of note, five patients had their breakpoint outside of these two bcrs: three of them within intron 2 and no functional KMT2A rearrangement; the other two within intron 35 and intron 36, fusing almost the whole KMT2A gene in frame to the respective partner genes ARHGEF12 and MLLT4. These two breakpoints may define a third and rare bcr (bcr3), although further cases are needed to support this hypothesis. Interestingly, 70 patients displayed a 3'-KMT2A deletion, indicating that the number of terminal deletions is higher than described previously. Two patients had a 5'-KMT2A deletion. All deletions started or ended in bcr1 and bcr2. We also observed a striking difference in the distribution of partner genes between bcr1 and bcr2. The most frequent translocation partners fused to bcr1 sites are transcription factors, while the partner genes linked to bcr2 sites generally code for cytosolic proteins. In bcr1, the 4 most frequent partner genes AFF1, MLLT3, MLLT1, and MLLT10, found in 80% of cases, all code for transcription factors that are part of the super elongation complex (SEC). These fusions therefore all lead to disruption of the hematopoietic lineage commitment. In contrast in bcr2, 3 partner genes USP2, MLLT4, and USP8 account for 85% of the cases. USP2 and USP8 are ubiquitin specific peptidases involved in cell signaling and exclusively fused to bcr2 in KMT2A. While MLLT4 is found as a partner in bcr1, bcr2 and bcr3 fusions; unlike other recurrent KMT2A partners linked to bcr1, it is not a transcription factor and it exerts oncogenic potential via dimerization like other cytosolic partners. We hypothesize that the oncogenic properties of USP2 and USP8 are dependent on dimerization like MLLT4 and that the most frequent fusions involving at different bcrs favor different oncogenic mechanisms: bcr1 transactivation and bcr2 dimerization. Further studies are needed to explain why USP2 and USP8 are exclusively associated with bcr2, and why the most frequent partner genes AFF1 and MLLT3 of the bcr1 are less frequent in bcr2. In conclusion, targeted NGS combined with bioinformatic analysis has expanded our knowledge of the KMT2A recombinome to include more fusion partners and has generated new hypotheses for future research on oncogenic mechanisms. Disclosures No relevant conflicts of interest to declare.