DETECTING LOW DIMENSIONAL DYNAMICS IN BIOLOGICAL EXPERIMENTS

1996 ◽  
Vol 07 (04) ◽  
pp. 429-435 ◽  
Author(s):  
XING PEI ◽  
FRANK MOSS
Keyword(s):  
Action Potentials ◽  
Sensory System ◽  
Random Processes ◽  
High Dimensional ◽  
Time Intervals ◽  
Dynamical Behaviors ◽  
Caudal Photoreceptor ◽  
The Times ◽  
Low Dimensional ◽  
Low Dimensional Dynamics

We discuss the well-known problems associated with efforts to detect and characterize chaos and other low dimensional dynamics in biological settings. We propose a new method which shows promise for addressing these problems, and we demonstrate its effectiveness in an experiment with the crayfish sensory system. Recordings of action potentials in this system are the data. We begin with a pair of assumptions: that the times of firings of neural action potentials are largely determined by high dimensional random processes or “noise”; and that most biological files are non stationary, so that only relatively short files can be obtained under approximately constant conditions. The method is thus statistical in nature. It is designed to recognize individual “events” in the form of particular sequences of time intervals between action potentials which are the signatures of certain well defined dynamical behaviors. We show that chaos can be distinguished from limit cycles, even when the dynamics is heavily contaminated with noise. Extracellular recordings from the crayfish caudal photoreceptor, obtained while hydrodynamically stimulating the array of hair receptors on the tailfan, are used to illustrate the method.

On-Line Chatter Detection Using Wavelet-Based Parameter Estimation

2000 ◽  
Author(s):  
Taejun Choi ◽  
Yung C. Shin
Keyword(s):  
Parameter Estimation ◽  
Estimation Algorithm ◽  
Cutting Process ◽  
High Dimensional ◽  
Detection Accuracy ◽  
Chatter Detection ◽  
Ml Estimation ◽  
On Line ◽  
Low Dimensional ◽  
Low Dimensional Dynamics

Abstract A new method for on-line chatter detection is presented. The proposed method characterizes the significant transition from high dimensional to low dimensional dynamics in the cutting process at the onset of chatter. Based on the likeness of the cutting process to the nearly-1/f process, this wavelet-based maximum likelihood (ML) estimation algorithm is applied for on-line chatter detection. The presented chatter detection index γ is independent of the cutting conditions and gives excellent detection accuracy and permissible computational efficiency, which makes it suitable for on-line implementation. The validity of the proposed method is demonstrated through the tests with extensive actual data obtained from turning and milling processes.

On-Line Chatter Detection Using Wavelet-Based Parameter Estimation

2003 ◽  
Vol 125 (1) ◽  
pp. 21-28 ◽  
Author(s):  
Taejun Choi ◽  
Yung C. Shin
Keyword(s):  
Parameter Estimation ◽  
Estimation Algorithm ◽  
High Dimensional ◽  
Detection Accuracy ◽  
Chatter Detection ◽  
Ml Estimation ◽  
Fractal Patterns ◽  
On Line ◽  
Low Dimensional ◽  
Low Dimensional Dynamics

A new method for on-line chatter detection is presented. The proposed method characterizes the significant transition from high dimensional to low dimensional dynamics in the cutting process at the onset of chatter. Based on the observation that cutting signals contain fractal patterns, a wavelet-based maximum likelihood (ML) estimation algorithm is applied to on-line chatter detection. The presented chatter detection index γ is independent of the cutting conditions and gives excellent detection accuracy and permissible computational efficiency, which makes it suitable for on-line implementation. The validity of the proposed method is demonstrated through the tests with extensive actual data obtained from turning and milling processes.

Predicting Time Series from Short-Term High-Dimensional Data

2014 ◽  
Vol 24 (12) ◽  
pp. 1430033 ◽  
Author(s):  
Huanfei Ma ◽  
Tianshou Zhou ◽  
Kazuyuki Aihara ◽  
Luonan Chen
Keyword(s):  
Time Series ◽  
Time Series Data ◽  
High Dimensional Data ◽  
Series Data ◽  
High Dimensional ◽  
Short Term ◽  
Low Dimensional ◽  
Low Dimensional Dynamics ◽  
Term Data

The prediction of future values of time series is a challenging task in many fields. In particular, making prediction based on short-term data is believed to be difficult. Here, we propose a method to predict systems' low-dimensional dynamics from high-dimensional but short-term data. Intuitively, it can be considered as a transformation from the inter-variable information of the observed high-dimensional data into the corresponding low-dimensional but long-term data, thereby equivalent to prediction of time series data. Technically, this method can be viewed as an inverse implementation of delayed embedding reconstruction. Both methods and algorithms are developed. To demonstrate the effectiveness of the theoretical result, benchmark examples and real-world problems from various fields are studied.

The Nonlinear Dynamics of the Crayfish Mechanoreceptor System

2003 ◽  
Vol 13 (08) ◽  
pp. 2013-2034 ◽  
Author(s):  
Sonya Bahar ◽  
Frank Moss
Keyword(s):  
Nonlinear Dynamics ◽  
Second Harmonic ◽  
Random Processes ◽  
Neural System ◽  
Nonlinear Dynamical ◽  
Caudal Photoreceptor ◽  
Dynamical Properties ◽  
Low Dimensional ◽  
Photoreceptor Neurons ◽  
Sensory Root

We review here the nonlinear dynamical properties of the crayfish mechanoreceptor system from the hydrodynamically sensitive hairs on the tailfan through the caudal photoreceptor neurons embedded in the 6th ganglion. Emphasis is on the extraction of low dimensional behavior from the random processes (noise) that dominate this neural system. We begin with stochastic resonance in the sensory root afferents and continue with a discussion of the photoreceptor oscillator and its instabilities. Stochastic synchronization, rectification and the generation of second harmonic responses in the photoreceptors are finally discussed.

scholarly journals A spiral attractor network drives rhythmic locomotion

2017 ◽  
Author(s):  
Angela M. Bruno ◽  
William N. Frost ◽  
Mark D. Humphries
Keyword(s):  
Movement Control ◽  
High Dimensional ◽  
Fictive Locomotion ◽  
Pedal Ganglion ◽  
Joint Activity ◽  
Population Activity ◽  
Neural Populations ◽  
Low Dimensional ◽  
Circuit Function ◽  
Low Dimensional Dynamics

AbstractThe joint activity of neural populations is high dimensional and complex. One strategy for reaching a tractable understanding of circuit function is to seek the simplest dynamical system that can account for the population activity. By imaging Aplysia’s pedal ganglion during fictive locomotion, here we show that its population-wide activity arises from a low-dimensional spiral attractor. Evoking locomotion moved the population into a low-dimensional, periodic, decaying orbit −a spiral −in which it behaved as a true attractor, converging to the same orbit when evoked, and returning to that orbit after transient perturbation. We found the same attractor in every preparation, and could predict motor output directly from its orbit, yet individual neurons’ participation changed across consecutive locomotion bouts. From these results, we propose that only the low-dimensional dynamics for movement control, and not the high-dimensional population activity, are consistent within and between nervous systems.

scholarly journals A spiral attractor network drives rhythmic locomotion

eLife ◽  
2017 ◽  
Vol 6 ◽  
Author(s):  
Angela M Bruno ◽  
William N Frost ◽  
Mark D Humphries
Keyword(s):  
Movement Control ◽  
High Dimensional ◽  
Fictive Locomotion ◽  
Pedal Ganglion ◽  
Joint Activity ◽  
Population Activity ◽  
Neural Populations ◽  
Low Dimensional ◽  
Circuit Function ◽  
Low Dimensional Dynamics

The joint activity of neural populations is high dimensional and complex. One strategy for reaching a tractable understanding of circuit function is to seek the simplest dynamical system that can account for the population activity. By imaging Aplysia’s pedal ganglion during fictive locomotion, here we show that its population-wide activity arises from a low-dimensional spiral attractor. Evoking locomotion moved the population into a low-dimensional, periodic, decaying orbit - a spiral - in which it behaved as a true attractor, converging to the same orbit when evoked, and returning to that orbit after transient perturbation. We found the same attractor in every preparation, and could predict motor output directly from its orbit, yet individual neurons’ participation changed across consecutive locomotion bouts. From these results, we propose that only the low-dimensional dynamics for movement control, and not the high-dimensional population activity, are consistent within and between nervous systems.

scholarly journals Mapping Low-Dimensional Dynamics to High-Dimensional Neural Activity: A Derivation of the Ring Model From the Neural Engineering Framework

2021 ◽  
Vol 33 (3) ◽  
pp. 827-852
Author(s):  
Omri Barak ◽  
Sandro Romani
Keyword(s):  
Neural Network ◽  
Neural Activity ◽  
Failure Modes ◽  
Neural Population ◽  
High Dimensional ◽  
Angular Variable ◽  
Neural Engineering ◽  
Ring Model ◽  
Low Dimensional ◽  
Low Dimensional Dynamics

Empirical estimates of the dimensionality of neural population activity are often much lower than the population size. Similar phenomena are also observed in trained and designed neural network models. These experimental and computational results suggest that mapping low-dimensional dynamics to high-dimensional neural space is a common feature of cortical computation. Despite the ubiquity of this observation, the constraints arising from such mapping are poorly understood. Here we consider a specific example of mapping low-dimensional dynamics to high-dimensional neural activity—the neural engineering framework. We analytically solve the framework for the classic ring model—a neural network encoding a static or dynamic angular variable. Our results provide a complete characterization of the success and failure modes for this model. Based on similarities between this and other frameworks, we speculate that these results could apply to more general scenarios.

scholarly journals Classification of Brainwaves for Sleep Stages by High-Dimensional FFT Features from EEG Signals

2020 ◽  
Vol 10 (5) ◽  
pp. 1797 ◽  
Author(s):  
Mera Kartika Delimayanti ◽  
Bedy Purnama ◽  
Ngoc Giang Nguyen ◽  
Mohammad Reza Faisal ◽  
Kunti Robiatul Mahmudah ◽  
...  
Keyword(s):  
Machine Learning ◽  
Sleep Stage ◽  
Machine Learning Algorithms ◽  
High Dimensional ◽  
Sleep Stages ◽  
Eeg Signals ◽  
Stage Classification ◽  
Sleep Stage Classification ◽  
Low Dimensional

Manual classification of sleep stage is a time-consuming but necessary step in the diagnosis and treatment of sleep disorders, and its automation has been an area of active study. The previous works have shown that low dimensional fast Fourier transform (FFT) features and many machine learning algorithms have been applied. In this paper, we demonstrate utilization of features extracted from EEG signals via FFT to improve the performance of automated sleep stage classification through machine learning methods. Unlike previous works using FFT, we incorporated thousands of FFT features in order to classify the sleep stages into 2–6 classes. Using the expanded version of Sleep-EDF dataset with 61 recordings, our method outperformed other state-of-the art methods. This result indicates that high dimensional FFT features in combination with a simple feature selection is effective for the improvement of automated sleep stage classification.

scholarly journals Multiscale low-dimensional motor cortical state dynamics predict naturalistic reach-and-grasp behavior

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Hamidreza Abbaspourazad ◽  
Mahdi Choudhury ◽  
Yan T. Wong ◽  
Bijan Pesaran ◽  
Maryam M. Shanechi
Keyword(s):  
Neural Control ◽  
Multiple Scales ◽  
Network Activity ◽  
Neural Dynamics ◽  
Population Activity ◽  
Reach And Grasp ◽  
Spatiotemporal Scales ◽  
Motor Cortical ◽  
Low Dimensional ◽  
Low Dimensional Dynamics

AbstractMotor function depends on neural dynamics spanning multiple spatiotemporal scales of population activity, from spiking of neurons to larger-scale local field potentials (LFP). How multiple scales of low-dimensional population dynamics are related in control of movements remains unknown. Multiscale neural dynamics are especially important to study in naturalistic reach-and-grasp movements, which are relatively under-explored. We learn novel multiscale dynamical models for spike-LFP network activity in monkeys performing naturalistic reach-and-grasps. We show low-dimensional dynamics of spiking and LFP activity exhibited several principal modes, each with a unique decay-frequency characteristic. One principal mode dominantly predicted movements. Despite distinct principal modes existing at the two scales, this predictive mode was multiscale and shared between scales, and was shared across sessions and monkeys, yet did not simply replicate behavioral modes. Further, this multiscale mode’s decay-frequency explained behavior. We propose that multiscale, low-dimensional motor cortical state dynamics reflect the neural control of naturalistic reach-and-grasp behaviors.

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