Mining asynchronous periodic patterns in time series data

2000 ◽  
Author(s):  
Jiong Yang ◽  
Wei Wang ◽  
Philip S. Yu
Keyword(s):  
Time Series ◽  
Time Series Data ◽  
Series Data ◽  
Periodic Patterns

scholarly journals TimeTrial: An Interactive Application for Optimizing the Design and Analysis of Transcriptomic Time-Series Data in Circadian Biology Research

2020 ◽  
Vol 35 (5) ◽  
pp. 439-451 ◽  
Author(s):  
Elan Ness-Cohn ◽  
Marta Iwanaszko ◽  
William L. Kath ◽  
Ravi Allada ◽  
Rosemary Braun
Keyword(s):  
Time Series ◽  
Experimental Design ◽  
Time Series Data ◽  
Synthetic Data ◽  
Optimal Choice ◽  
Series Data ◽  
Detection Accuracy ◽  
Periodic Patterns ◽  
Detection Algorithms ◽  
The Impact

The circadian rhythm drives the oscillatory expression of thousands of genes across all tissues, coordinating physiological processes. The effect of this rhythm on health has generated increasing interest in discovering genes under circadian control by searching for periodic patterns in transcriptomic time-series experiments. While algorithms for detecting cycling transcripts have advanced, there remains little guidance quantifying the effect of experimental design and analysis choices on cycling detection accuracy. We present TimeTrial, a user-friendly benchmarking framework using both real and synthetic data to investigate cycle detection algorithms’ performance and improve circadian experimental design. Results show that the optimal choice of analysis method depends on the sampling scheme, noise level, and shape of the waveform of interest and provides guidance on the impact of sampling frequency and duration on cycling detection accuracy. The TimeTrial software is freely available for download and may also be accessed through a web interface. By supplying a tool to vary and optimize experimental design considerations, TimeTrial will enhance circadian transcriptomics studies.

Kaleidomaps: A New Technique for the Visualization of Multivariate Time-Series Data

2007 ◽  
Vol 6 (2) ◽  
pp. 155-167 ◽  
Author(s):  
Kim Bale ◽  
Paul Chapman ◽  
Nick Barraclough ◽  
Jon Purdy ◽  
Nizamettin Aydin ◽  
...  
Keyword(s):  
Time Series ◽  
Time Series Data ◽  
Multivariate Time Series ◽  
Rapid Identification ◽  
Series Data ◽  
Data Sets ◽  
Periodic Patterns ◽  
Large Complex ◽  
Visualization Tools ◽  
Glass Patterns

In this paper, we describe a new visualization technique that can facilitate our understanding and interpretation of large complex multivariate time-series data sets. ‘Kaleidomaps’ have been carefully developed taking into account research into how we perceive form and structure within Glass patterns. We have enhanced the classic cascade plot using the curvature of a line to alter the detection of possible periodic patterns within multivariate dual periodicity data sets. Similar to Glass patterns, the concentric nature of the Kaleidomap may induce a motion signal within the brain of the observer facilitating the perception of patterns within the data. Kaleidomaps and our associated visualization tools alter the rapid identification of periodic patterns not only within their own variants but also across many different sets of variants. By linking this technique with traditional line graphs and signal processing techniques, we are able to provide the user with a set of visualization tools that permit the combination of multivariate time-series data sets in their raw form and also with the results of mathematical analysis. In this paper, we provide two case study examples of how Kaleidomaps can be used to improve our understanding of large complex multivariate time dependent data.

scholarly journals spiralize: an R Package for Visualizing Data on Spirals

2021 ◽  
Author(s):  
Zuguang Gu ◽  
Daniel Huebschmann
Keyword(s):  
Time Series ◽  
General Solution ◽  
Data Visualization ◽  
Real World ◽  
Time Series Data ◽  
R Package ◽  
Series Data ◽  
Periodic Patterns ◽  
Real World Datasets ◽  
High Level

Spiral layout has two major advantages for data visualization. First, it is able to visualize data with long axes, which greatly improves the resolution of visualization. Second, it is efficient for time series data to reveal periodic patterns. Here we present the R package spiralize that provides a general solution for visualizing data on spirals. spiralize implements numerous graphics functions so that self-defined high-level graphics can be easily implemented by users. The power of spiralize is demonstrated by five real world datasets.

Graphical Exploratory Data Analysis for Categorical Longitudinal and Time Series Data

2013 ◽  
Author(s):  
Stephen J. Tueller ◽  
Richard A. Van Dorn ◽  
Georgiy Bobashev ◽  
Barry Eggleston
Keyword(s):  
Time Series ◽  
Data Analysis ◽  
Exploratory Data Analysis ◽  
Time Series Data ◽  
Series Data ◽  
Exploratory Data

Faktor-Faktor Yang Mempengaruhi Nilai Tukar Dollar Amerika Serikat Terhadap Rupiah Tahun 2000–2013

2017 ◽  
Vol 1 (2) ◽  
pp. 177-191
Author(s):  
Rizki Rahma Kusumadewi ◽  
Wahyu Widayat
Keyword(s):  
Time Series ◽  
Exchange Rate ◽  
Money Supply ◽  
Time Series Data ◽  
The United States ◽  
Economic Conditions ◽  
Series Data ◽  
Arch Model ◽  
United States Dollar ◽  
The Exchange Rate

Exchange rate is one tool to measure a country’s economic conditions. The growth of a stable currency value indicates that the country has a relatively good economic conditions or stable. This study has the purpose to analyze the factors that affect the exchange rate of the Indonesian Rupiah against the United States Dollar in the period of 2000-2013. The data used in this study is a secondary data which are time series data, made up of exports, imports, inflation, the BI rate, Gross Domestic Product (GDP), and the money supply (M1) in the quarter base, from first quarter on 2000 to fourth quarter on 2013. Regression model time series data used the ARCH-GARCH with ARCH model selection indicates that the variables that significantly influence the exchange rate are exports, inflation, the central bank rate and the money supply (M1). Whereas import and GDP did not give any influence.

An Anomaly Detection Method with Exemplar Subsequence for Time Series Data

2016 ◽  
Vol 136 (3) ◽  
pp. 363-372
Author(s):  
Takaaki Nakamura ◽  
Makoto Imamura ◽  
Masashi Tatedoko ◽  
Norio Hirai
Keyword(s):  
Time Series ◽  
Anomaly Detection ◽  
Time Series Data ◽  
Detection Method ◽  
Series Data

The Comparison of Land Subsidence between East and West Side of Bangkok, Thailand

2020 ◽  
Vol 17 (3) ◽  
pp. 1
Author(s):  
Angkana Pumpuang ◽  
Anuphao Aobpaet
Keyword(s):  
Time Series ◽  
Land Subsidence ◽  
Time Series Data ◽  
Series Data ◽  
Industrial Estates ◽  
Vertical Displacements ◽  
Land Deformation ◽  
Extensive Farming ◽  
Chao Phraya River ◽  
Set Up

The land deformation in line of sight (LOS) direction can be measured using time series InSAR. InSAR can successfully measure land subsidence based on LOS in many big cities, including the eastern and western regions of Bangkok which is separated by Chao Phraya River. There are differences in prosperity between both sides due to human activities, land use, and land cover. This study focuses on the land subsidence difference between the western and eastern regions of Bangkok and the most possible cause affecting the land subsidence rates. The Radarsat-2 single look complex (SLC) was used to set up the time series data for long term monitoring. To generate interferograms, StaMPS for Time Series InSAR processing was applied by using the PSI algorithm in DORIS software. It was found that the subsidence was more to the eastern regions of Bangkok where the vertical displacements were +0.461 millimetres and -0.919 millimetres on the western and the eastern side respectively. The districts of Nong Chok, Lat Krabang, and Khlong Samwa have the most extensive farming area in eastern Bangkok. Besides, there were also three major industrial estates located in eastern Bangkok like Lat Krabang, Anya Thani and Bang Chan Industrial Estate. By the assumption of water demand, there were forty-eight wells and three wells found in the eastern and western part respectively. The number of groundwater wells shows that eastern Bangkok has the demand for water over the west, and the pumping of groundwater is a significant factor that causes land subsidence in the area.Keywords: Subsidence, InSAR, Radarsat-2, Bangkok

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