scholarly journals Genome Survey and Transcriptome Analysis on Mycelia and Primordia of Agaricus blazei

2020 ◽  
Vol 2020 ◽  
pp. 1-12 ◽  
Author(s):  
Yuan-Ping Lu ◽  
Jian-Hua Liao ◽  
Zhong-Jie Guo ◽  
Zhi-Xin Cai ◽  
Mei-Yuan Chen
Keyword(s):  
Transcriptome Analysis ◽  
Fruiting Body ◽  
Ribosome Biogenesis ◽  
De Novo ◽  
Genomic Sequence ◽  
Functional Enrichment ◽  
Biosynthesis Pathway ◽  
Agaricus Blazei ◽  
Fruiting Body Formation ◽  
Body Formation

Agaricus blazei, a type of edible straw-rotting mushroom with somewhat sweet taste and fragrance of almonds, has attracted considerable scientific and practical attention. High-throughput Illumina PE150 and PacBio RSII platform were employed to generate a genomic sequence. De novo assembly generated 36 contigs with 38,686,133 bp in size, containing 10,119 putative predicted genes. Additionally, we also studied transcriptional regulation of the mycelia and the primordia for exploration of genes involved in fruiting body formation. Expression profiling analysis revealed that 2,164 genes were upregulated in mycelia and 1,557 in primordia. Functional enrichment showed that differentially expressed genes associated with response to stress, ribosome biogenesis, arginine biosynthesis, and steroid biosynthesis pathway were more active in fruiting body. The genome and transcriptome analysis of A. blazei provide valuable sequence resources and contribute to our understanding of genes related to the biosynthesis pathway of polysaccharide and benzaldehyde, as well as the fruiting body formation.

scholarly journals FibA and PilA act cooperatively during fruiting body formation of Myxococcus xanthus

2006 ◽  
Vol 61 (5) ◽  
pp. 1283-1293 ◽  
Author(s):  
Pamela J. Bonner ◽  
Wesley P. Black ◽  
Zhaomin Yang ◽  
Lawrence J. Shimkets
Keyword(s):  
Fruiting Body ◽  
Myxococcus Xanthus ◽  
Fruiting Body Formation ◽  
Body Formation

Fruiting-Body Formation of Tricholoma giganteum on Artificial Medium.

1995 ◽  
Vol 33 (3) ◽  
pp. 169-174 ◽  
Author(s):  
Kazunari INABA ◽  
Yoshinori TAKANO ◽  
Yoshikazu MAYUZUMI ◽  
Toshirou MITSUNAGA
Keyword(s):  
Fruiting Body ◽  
Fruiting Body Formation ◽  
Artificial Medium ◽  
Body Formation

Culmination in the slime mould Dictyostelium discoideum studied with a scanning electron microscope

Development ◽  
1976 ◽  
Vol 35 (2) ◽  
pp. 323-333
Author(s):  
D. J. Watts ◽  
T. E. Treffry
Keyword(s):  
Electron Microscopy ◽  
Scanning Electron Microscopy ◽  
Dictyostelium Discoideum ◽  
Fruiting Body ◽  
Maximum Height ◽  
Slow Process ◽  
Fruiting Body Formation ◽  
Basal Disc ◽  
Body Formation ◽  
Scanning Electron

Myxamoebae of Dictyostelium discoideum were allowed to develop on cellulose acetate filters, and specimens taken at various stages of fruiting body formation were prepared for study by scanning electron microscopy. In the immature fruiting body where the mass of pre-spore cells has just been lifted off the substratum by the developing stalk, the pre-spore cells are irregular in shape and are similar in appearance to cells in aggregates at earlier stages of development. As the stalk lengthens, the pre-spore cells gradually separate from one another and become rounded and elongate, but mature spores are not visible until the fruiting body reaches its maximum height. It is concluded that, contrary to previous reports, spore maturation is a slow process and is not completed until the sorus becomes pigmented. The mature stalk is surrounded by a smooth cellulose sheath but this does not envelop the cells of the basal disc, which remain discrete. The fruiting body is enclosed in a slime sheath and this may be important in holding together the mass of spores.

scholarly journals De novo transcriptome analysis of the critically endangered alpine Himalayan herb Nardostachys jatamansi reveals the biosynthesis pathway genes of tissue-specific secondary metabolites

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Nisha Dhiman ◽  
Anil Kumar ◽  
Dinesh Kumar ◽  
Amita Bhattacharya
Keyword(s):  
Secondary Metabolites ◽  
Transcriptome Analysis ◽  
Vegetative Growth ◽  
De Novo ◽  
Biosynthesis Pathway ◽  
De Novo Transcriptome ◽  
Tissue Specific ◽  
Nardostachys Jatamansi ◽  
Secondary Metabolite Biosynthesis

Abstract The study is the first report on de novo transcriptome analysis of Nardostachys jatamansi, a critically endangered medicinal plant of alpine Himalayas. Illumina GAIIx sequencing of plants collected during end of vegetative growth (August) yielded 48,411 unigenes. 74.45% of these were annotated using UNIPROT. GO enrichment analysis, KEGG pathways and PPI network indicated simultaneous utilization of leaf photosynthates for flowering, rhizome fortification, stress response and tissue-specific secondary metabolites biosynthesis. Among the secondary metabolite biosynthesis genes, terpenoids were predominant. UPLC-PDA analysis of in vitro plants revealed temperature-dependent, tissue-specific differential distribution of various phenolics. Thus, as compared to 25 °C, the phenolic contents of both leaves (gallic acid and rutin) and roots (p-coumaric acid and cinnamic acid) were higher at 15 °C. These phenolics accounted for the therapeutic properties reported in the plant. In qRT-PCR of in vitro plants, secondary metabolite biosynthesis pathway genes showed higher expression at 15 °C and 14 h/10 h photoperiod (conditions representing end of vegetative growth period). This provided cues for in vitro modulation of identified secondary metabolites. Such modulation of secondary metabolites in in vitro systems can eliminate the need for uprooting N. jatamansi from wild. Hence, the study is a step towards effective conservation of the plant.

scholarly journals Multicellular Development in Myxococcus xanthus Is Stimulated by Predator-Prey Interactions

2007 ◽  
Vol 189 (15) ◽  
pp. 5675-5682 ◽  
Author(s):  
James E. Berleman ◽  
John R. Kirby
Keyword(s):  
Fruiting Body ◽  
Prey Availability ◽  
Process Analysis ◽  
Myxococcus Xanthus ◽  
Stringent Response ◽  
Fruiting Bodies ◽  
Fruiting Body Formation ◽  
Multicellular Development ◽  
Body Formation ◽  
Body Development

ABSTRACT Myxococcus xanthus is a predatory bacterium that exhibits complex social behavior. The most pronounced behavior is the aggregation of cells into raised fruiting body structures in which cells differentiate into stress-resistant spores. In the laboratory, monocultures of M. xanthus at a very high density will reproducibly induce hundreds of randomly localized fruiting bodies when exposed to low nutrient availability and a solid surface. In this report, we analyze how M. xanthus fruiting body development proceeds in a coculture with suitable prey. Our analysis indicates that when prey bacteria are provided as a nutrient source, fruiting body aggregation is more organized, such that fruiting bodies form specifically after a step-down or loss of prey availability, whereas a step-up in prey availability inhibits fruiting body formation. This localization of aggregates occurs independently of the basal nutrient levels tested, indicating that starvation is not required for this process. Analysis of early developmental signaling relA and asgD mutants indicates that they are capable of forming fruiting body aggregates in the presence of prey, demonstrating that the stringent response and A-signal production are surprisingly not required for the initiation of fruiting behavior. However, these strains are still defective in differentiating to spores. We conclude that fruiting body formation does not occur exclusively in response to starvation and propose an alternative model in which multicellular development is driven by the interactions between M. xanthus cells and their cognate prey.

scholarly journals Optimum Conditions for Artificial Fruiting Body Formation ofCordyceps cardinalis

Mycobiology ◽  
2010 ◽  
Vol 38 (2) ◽  
pp. 133 ◽  
Author(s):  
Soo-Young Kim ◽  
Bhushan Shrestha ◽  
Gi-Ho Sung ◽  
Sang-Kuk Han ◽  
Jae-Mo Sung
Keyword(s):  
Fruiting Body ◽  
Optimum Conditions ◽  
Fruiting Body Formation ◽  
Body Formation
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