Abstract LB-412: TargetRich™ cancer gene panels: targeted next generation sequencing in cancer samples

Author(s):  
Katherine J. Spayd ◽  
Irina Vasenkova ◽  
Tatiana Shvetsova ◽  
Randall C. Bachmeyer ◽  
Richard M. Myers ◽  
...  
2021 ◽  
Vol 8 (1) ◽  
pp. 19-24
Author(s):  
Sinem Yalcintepe ◽  
Hakan Gurkan ◽  
Fatma Nur Korkmaz ◽  
Selma Demir ◽  
Engin Atli ◽  
...  

The aim of this study was to evaluate germline variant frequencies of pheochromocytoma and paraganglioma targeted susceptibility genes with next-generation sequencing method. Germline DNA from 75 cases were evaluated with targeted next-generation sequencing on an Illumina NextSeq550 instrument. KIF1B, RET, SDHB, SDHD, TMEM127, and VHL genes were included in the study, and Sanger sequencing was used for verifying the variants. The pathogenic/likely pathogenic variants were in the VHL, RET, SDHB, and SDHD genes, and the diagnosis rate was 24% in this study. Three different novel pathogenic variants were determined in five cases. This is the first study from Turkey, evaluating germline susceptibility genes of pheochromocytoma and paraganglioma with a detection rate of 24% and three novel variants. All patients with pheochromocytoma and paraganglioma need clinical genetic testing with expanded targeted gene panels for higher diagnosis rates.


2017 ◽  
Vol 141 (6) ◽  
pp. 787-797 ◽  
Author(s):  
Avni Santani ◽  
Jill Murrell ◽  
Birgit Funke ◽  
Zhenming Yu ◽  
Madhuri Hegde ◽  
...  

Context.— The number of targeted next-generation sequencing (NGS) panels for genetic diseases offered by clinical laboratories is rapidly increasing. Before an NGS-based test is implemented in a clinical laboratory, appropriate validation studies are needed to determine the performance characteristics of the test. Objective.— To provide examples of assay design and validation of targeted NGS gene panels for the detection of germline variants associated with inherited disorders. Data Sources.— The approaches used by 2 clinical laboratories for the development and validation of targeted NGS gene panels are described. Important design and validation considerations are examined. Conclusions.— Clinical laboratories must validate performance specifications of each test prior to implementation. Test design specifications and validation data are provided, outlining important steps in validation of targeted NGS panels by clinical diagnostic laboratories.


Author(s):  
Elewys Hearne ◽  
◽  
Susan Lightman ◽  

There is huge potential in using targeted Next Generation Sequencing (NGS) gene panels to improve diagnosis of congenital cataract, however the many difficultiesin incorporating it into routine clinical care are explored. Treatment options for children with congenital cataract are described. Keywords: Congenital; Cataracts; Genetics; Treatment.


Sign in / Sign up

Export Citation Format

Share Document