Additional data on Iranian trichodorids (Triplonchida: Trichodoridae) and first record of a rare species, Trichodorus variabilis Roca, 1998

Nematology ◽  
2017 ◽  
Vol 19 (2) ◽  
pp. 121-129 ◽  
Author(s):  
Majid Pedram ◽  
Ali Roshan-Bakhsh ◽  
Ebrahim Pourjam ◽  
Mohammad Reza Atighi ◽  
Wilfrida Decraemer ◽  
...  
Keyword(s):  
Phylogenetic Analyses ◽  
First Record ◽  
Molecular Data ◽  
Slight Variation ◽  
Natural Forests ◽  
Northern Iran ◽  
Phylogenetic Studies ◽  
Molecular Phylogenetic ◽  
First Time ◽  
Of Greece

Trichodorus variabilis, recovered from three separate locations in natural forests of northern Iran, was studied using morphological, morphometric and molecular data. Variation in position of the ventromedian cervical papillae (CP1 and CP2) with respect to the onchiostyle base in the resting position, and spicule characters (having or lacking striation in distal blade region and bristles in proximal blade region) were observed. Variation was also observed in the nature of the pharyngo-intestinal junction (offset to slight overlapping). The secretory-excretory pore of females also showed slight variation in placement. Molecular phylogenetic studies, using partial 28S rDNA D2-D3 sequences of three studied populations and one sequenced isolate of the species from Greece, revealed T. variabilis has variation in the sequences of this genomic fragment. The similarity percent of four sequences ranged from 96.7 to 99.7%. The species was found for the first time outside of Greece, the country from which it was originally described. A newly recovered population of T. persicus, originally described from Iran, was also included in the molecular phylogenetic analyses.

scholarly journals ULASAN Kajian Filogenetika Molekuler dan Peranannya dalam Menyediakan Informasi Dasar untuk Meningkatkan Kualitas Sumber Genetik Anggrek

2016 ◽  
Vol 4 (1) ◽  
pp. 35 ◽  
Author(s):  
Topik Hidayat ◽  
Adi Pancoro
Keyword(s):  
Dna Sequences ◽  
Molecular Phylogenetics ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Biochemical Properties ◽  
Intergeneric Hybrids ◽  
Basic Knowledge ◽  
Phylogenetic Studies ◽  
Molecular Phylogenetic ◽  
Ornamental Crops

<p>Early information<br />resulted from molecular phylogenetic studies of many important<br />ornamental crops is often less attention to many<br />growers and farmers. Phylogenetics is one of the most preferable<br />method in systematics to reconstruct evolutionary<br />relationships of groups of biological organisms in order to<br />understand their biodiversities. This has been revolutionized<br />by DNA sequences data. In this method, a group of organisms<br />that shares many identical characteristics are considered<br />to be closely related; deriving from a common<br />ancestor and is assumed to have similar genetic patterns<br />and biochemical properties. By these basic principles,<br />molecular phylogenetics plays important roles in revealing a<br />basic knowledge on pattern of relationships to which<br />genetic resources can be improved. Over the past decade,<br />botanists have done several thousand phylogenetic analyses<br />based on molecular data of economically and horticulturally<br />important crops. Orchids are the best example for this.<br />There is no doubt that most orchid plants had played roles in<br />horticulture and hybridization. At present, many infrageneric<br />and intergeneric hybrids are available commercially. Successful<br />hybridization can be achieved if two or more individual<br />plants understudy are closely related in respect to their<br />genetics and evolution.</p>

Floral ontogeny and anatomy of the shrub Gaiadendron punctatum and a comparison of floral characters in the tribes Gaiadendrinae and Nuytsiae (Loranthaceae)

2021 ◽  
Vol 69 (3) ◽  
Author(s):  
Hernán Darío Suárez ◽  
Camila Robayo ◽  
Xavier Marquínez ◽  
Lauren Raz
Keyword(s):  
Vascular Tissue ◽  
Developmental Stages ◽  
Floral Anatomy ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Inflorescence Development ◽  
Mountainous Regions ◽  
Phylogenetic Studies ◽  
Molecular Phylogenetic ◽  
Floral Characters

Introducction: Gaiadendron punctatum is a hemiparasitic species of Loranthaceae (Tribe Gaiadendreae) that is widely distributed in mountainous regions of Central and South America. Embryological and phylogenetic studies in the family indicate a trend towards reduction of the gynoecium and ovules, the morphology of which supports the current circumscription of Tribe Gaiadendreae (Gaiadendron and Atkinsonia). Molecular phylogenetic studies suggest that Nuytsia, Atkinsonia and Gaiadendron diverged successively, forming a grade at the base of the Loranthaceae, but support values are low. Objetive: In the present study, the floral anatomy of Gaiadendron punctatum was investigated in order to provide additional data to permit comparisons among the three basal-most genera in the Loranthaceae and reevaluate their relationships. Methods: Flowers of G. punctatum were collected at different developmental stages and serial sections were prepared and analyzed by light microscopy. Results: Inflorescence development is acropetal; the flowers are bisexual with an inferior ovary surmounted by a calyculus, a ring-shaped structure lacking vascular tissue; the ovary is comprised of seven basal locules, each with an ategmic, tenuinucellate ovule. Above the locules is a mamelon that is fused with the adjacent tissues. The androecium is comprised of seven epipetalous stamens, the anthers with fibrous endothecium dehiscence through a single longitudinal slit, releasing tricolpated pollen. Conclusions: The results of this study show that Gaiadendron and Atkinsonia share versatile, dorsifixed anthers, while Gaiadendron and Nuytsia share the same mode of anther dehiscence. On the other hand, Gaiadendron shares with members of Tribe Elytrantheae an amyliferous mamelon and an unvascularized calyculus. Combined phylogenetic analyses of morphological and molecular data are desirable to determine whether Tribe Gaiadendreae comprises a clade, a grade or if the two genera are more distantly related.

Disentangling the taxonomy of the Galactia-Camptosema- Collaea complex with new generic circumscriptions in the Galactia clade (Leguminosae, Diocleae)

Neodiversity ◽  
2020 ◽  
Vol 13 (1) ◽  
pp. 56-94
Author(s):  
Luciano P. Queiroz ◽  
◽  
Ana C.S. Oliveira ◽  
Cristiane Snak
Keyword(s):  
Maximum Parsimony ◽  
Phylogenetic Analyses ◽  
Morphological Characters ◽  
Molecular Data ◽  
New Genera ◽  
Genus Level ◽  
Phylogenetic Studies ◽  
Taxonomic History ◽  
Molecular Phylogenetic

The Galactia clade is one of three major lineages of the papilionoid legume tribe Diocleae. It comprises eight genera and approximately 140 species almost entirely restricted to the Americas. Establishing stable generic boundaries within this clade has been a challenge because of its tortuous taxonomic history and the broad polyphyly of the genera of the so-called Galactia-Camptosema-Collaea complex. Previous molecular phylogenetic studies revealed some well-supported lineages, but did not advance towards any new taxonomic arrangements. We carried out maximum parsimony and Bayesian phylogenetic analyses of a combined dataset including our previously published multilocus molecular data (nrITS and ETS and plastid trnK/matK and trnT-Y regions) and 82 morphological characters. The resulting topologies largely concur with those previously reported based on molecular data only, where Camptosema and Galactia appear as broadly polyphyletic, with species scattered among five (Camptosema) and seven (Galactia) of the twelve lineages that are newly recognized here at genus level. We are therefore proposing the following new taxonomic rearrangements within the Galactia clade: descriptions of the new genera Caetangil, Cerradicola, Mantiqueira, and Nanogalactia; resurrection of Betencourtia; and the subsuming of Neorudolphia into Rhodopis and of Camptosema sect. Macropetalum into Cratylia.

Phylogenetic position of Coronastrum ellipsoideum and description of Parachlorella hussii sp. nov.

Biologia ◽  
2011 ◽  
Vol 66 (4) ◽  
Author(s):  
Christina Bock ◽  
Marie Pažoutová ◽  
Lothar Krienitz
Keyword(s):  
Molecular Data ◽  
Phylogenetic Position ◽  
Rrna Gene ◽  
Combined Approach ◽  
Molecular Analyses ◽  
Phylogenetic Studies ◽  
The Family ◽  
Its Rrna Gene ◽  
Molecular Phylogenetic ◽  
First Time

AbstractFollowing traditional morphological concepts, the genus Coronastrum is considered to be a rare member of the Scenedesmaceae (Chorophyceae). This classification may be called into question when molecular data are taken into account as well. Recent molecular phylogenetic studies revealed the polyphyletic origin of the family Scenedesmaceae within the Chlorophyceae and Trebouxiophyceae. In a combined approach of morphological analyses, SSU/ITS rRNA gene phylogeny and comparison of the ITS secondary structure, we analysed the systematics of Coronastrum strains available in public strain collections. Our molecular analyses revealed a new subclade within the Chlorella clade of the Chlorellaceae consisting of Coronastrum ellipsoideum, two strains with Dictyosphaerium-like morphology and one strain which fits the description of the genus Parachlorella. Four additional strains formed together a new lineage within the genus Parachlorella in the Parachlorella clade of the Chlorellaceae. These strains differ from the already known Parachlorella species in complementary base changes within the ITS2 and are here described for the first time as Parachlorella hussii sp. nov.

The formerly enigmatic Unidentiidae in the limelight again: a new species of the genus Unidentia from Thailand (Gastropoda: Nudibranchia)

Zootaxa ◽  
2019 ◽  
Vol 4551 (5) ◽  
pp. 556 ◽  
Author(s):  
TATIANA KORSHUNOVA ◽  
RAHUL MEHROTRA ◽  
SPENCER ARNOLD ◽  
KENNET LUNDIN ◽  
BERNARD PICTON ◽  
...  
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Morphological Data ◽  
Sea Slugs ◽  
The Family ◽  
Molecular Phylogenetic ◽  
Morphological Differences ◽  
First Time ◽  
A New Species

An integrative molecular and morphological study is presented for the family Unidentiidae. Molecular phylogenetic analyses were conducted with the inclusion of all previous and newly obtained molecular data for the family Unidentiidae Millen & Hermosillo 2012. A new species of the genus Unidentia Millen & Hermosillo 2012, U. aliciae sp. nov., is described from Thailand as part of an inventory of sea slugs at Koh Tao. All up-to-date available morphological data for the species of the genus Unidentia is for the first time summarized. Morphological differences among the different species of Unidentia are clarified showing that every species has its own distinguishable morphological traits. According to the new molecular and morphological data, the family Unidentiidae is re-confirmed as a well-supported taxon of the aeolidacean nudibranchs. The taxonomy and phylogeny of the Aeolidacea in the light of the family Unidentiidae is briefly discussed and necessity of a fine-scale and narrowly-defined taxa approach instead of a ‘‘superlumping’’ one is highlighted. 

scholarly journals The occurrence of three species of the genus Oscheius Andrássy, 1976 (Nematoda: Rhabditida) in Iran

2017 ◽  
Vol 57 (3) ◽  
pp. 248-255 ◽  
Author(s):  
Ahmad Valizadeh ◽  
Shila Goldasteh ◽  
Zahra Rafiei-Karahroodi ◽  
Majid Pedram
Keyword(s):  
Morphological Characters ◽  
Molecular Data ◽  
Parasitic Nematodes ◽  
Bayesian Posterior Probability ◽  
Agricultural Pests ◽  
Phylogenetic Studies ◽  
Dead Trees ◽  
Molecular Phylogenetic ◽  
Morphological And Molecular Data ◽  
First Time

AbstractDue to importance and effectiveness of some entomopathogenic or insect parasitic nematodes in controlling of agricultural pests, or pests of non-agricultural plants, a study was conducted in order to identify the species of this group of nematodes in city of Tehran. As the result, three species belonging to the genusOscheiuswere recovered in association with bark samples having the bark beetle galleries. Morphological and molecular data were provided for two recently recovered species of the genus, namelyO. necromenusandO. onirici. Molecular data were also provided for a recently recovered isolate ofO. tipulae. All three species were recovered in association with bark samples collected from dead trees in the city of Tehran. Morphological characters and morphometric data of the two aforementioned species are in accordance with the data given in their original descriptions. One recovered individual from a small bark sample characterized by its short body length was sequenced for its 28S and internal transcribed spacer (ITS) rDNA loci, and the results of BLAST search using the newly obtained partial sequences revealed that it belonged toO. tipulae. Molecular phylogenetic studies revealed recently sequenced Iranian populations ofO. oniriciandO. tipulaeforming a clade with other isolates/populations of these species in ITS tree with maximal Bayesian posterior probability (BPP), and presently sequenced isolates ofO. tipulaeandO. necromenusform a clade with other isolates of these species in 28S tree. The two speciesO. oniriciandO. necromenuswere reported in Iran for the first time.

Five new morphological types of virgulate and microcotylous xiphidiocercariae based on morphological and molecular phylogenetic analyses

2019 ◽  
Vol 94 ◽  
Author(s):  
S.V. Shchenkov ◽  
S.A. Denisova ◽  
G.A. Kremnev ◽  
A.A. Dobrovolskij
Keyword(s):  
Phylogenetic Analyses ◽  
Morphological Characters ◽  
Molecular Data ◽  
Phylogenetic Position ◽  
The Family ◽  
Family Level ◽  
Molecular Phylogenetic ◽  
Morphological And Molecular Data ◽  
First Time

Abstract The phylogenetic position of most xiphidiocercariae from subgroups Cercariae virgulae and Cercariae microcotylae remains unknown or unclear, even at the family level. In this paper, we studied the morphology and molecular phylogeny of 15 microcotylous and virgulate cercariae (11 new and four previously described ones). Based on morphological and molecular data, we suggested five distinct morphological types of xiphidiocercariae, which are a practical alternative to Cercariae virgulae and Cercariae microcotylae subgroups. Four of these types correspond to actual digenean taxa (Microphallidae, Lecithodendriidae, Pleurogenidae and Prosthogonimidae), while the fifth is represented by Cercaria nigrospora Wergun, 1957, which we classified on the basis of molecular data for the first time. We reassessed the relative importance of morphological characters used for the classification of virgulate and microcotylous cercariae, and discussed the main evolutionary trends within xiphidiocercariae. Now stylet cercariae can be reliably placed into several sub-taxa of Microphalloidea on the basis of their morphological features.

scholarly journals Morphological and molecular phylogenetic studies on Battarrea phalloides (Agaricales): a new report to Indian mycobiota

2020 ◽  
Vol 12 (8) ◽  
pp. 15881-15888
Author(s):  
R. Kantharaja ◽  
M. Krishnappa
Keyword(s):  
Molecular Data ◽  
Red List ◽  
European Countries ◽  
Phylogenetic Studies ◽  
Molecular Phylogenetic ◽  
First Time

The Scaly-stalked Puffball Battarrea phalloides (Dicks.) Pers. is recorded for the first time in India.  The fungus is reported from many countries across the continents and typically uncommon and rare in all regions.  It is Red Listed in most of the European countries and is under assessment in IUCN Global Fungal Red List Initiative.  The Indian sample of B. phalloides is reported from Kadur Taluk of Chikkamagaluru District, Karnataka with morpho-molecular data.  

Phylogenetic studies in the South American tribe Dichroplini (Orthoptera: Acrididae: Melanoplinae): is the Paranaense-Pampeano informal genus group a natural clade?

Zootaxa ◽  
2009 ◽  
Vol 2174 (1) ◽  
pp. 51-62 ◽  
Author(s):  
P. A. DINGHI ◽  
V. CONFALONIERI ◽  
M. M. CIGLIANO
Keyword(s):  
Phylogenetic Analyses ◽  
Mitochondrial Gene ◽  
Morphological Characters ◽  
Molecular Data ◽  
South American ◽  
Male And Female ◽  
Weak Support ◽  
Phylogenetic Studies ◽  
Molecular Phylogenetic ◽  
Group A

The Dichroplini genera Scotussa, Leiotettix, Ronderosia, Atrachelacris, Chlorus, Eurotettix and Dichromatos have been grouped into the “Paranaense-Pampeano” informal genus group, based on characters of the male genitalia. However, recent molecular phylogenetic analyses showed weak support values or no support at all for this group. In this study, we used molecular and morphological characters to test the monophyly of this informal genus group. Morphological characters included aspects of the general morphology, and male and female genitalia as well. Whereas the molecular data was based on one mitochondrial gene: cytochrome oxidase I. Independent and combined phylogenetic analyses of the data were performed under both unweighted and implied weighting parsimony. Our results showed that, when only molecular data is considered, the “Paranaense-Pampeano” informal genus group is not recovered. However, the group is monophyletic according to morphological and combined analyses. The “Paranaense-Pampeano” informal genus group is considered to be a natural clade; therefore, we propose the genus group name Scotussae. As a final remark, the molecular data provided in most cases the same evidence of relationships as morphology.

A new continent in the geographic distribution of the genus Oregoniplana (Platyhelminthes: Tricladida: Maricola), its rediscovery in South Africa and its molecular phylogenetic position

2019 ◽  
Vol 187 (1) ◽  
pp. 82-99 ◽  
Author(s):  
Wei-Xuan Li ◽  
Ronald Sluys ◽  
Miquel Vila-Farré ◽  
Jia-Jia Chen ◽  
Ying Yang ◽  
...  
Keyword(s):  
South Africa ◽  
Phylogenetic Tree ◽  
South African ◽  
Food Preferences ◽  
First Record ◽  
Molecular Data ◽  
Phylogenetic Position ◽  
African Species ◽  
Molecular Phylogenetic ◽  
First Time

Abstract Here we describe a new species for the genus Oregoniplana from the coast of China, representing the third species for the genus and the first record of this genus for Asia. The other species are known from Oregon, USA, and from South Africa. Specimens of the South African species, Oregoniplana pantherina, were recently rediscovered, forming the second record for the species, which provided the basis for a necessary re-description. Molecular data (18S rDNA and 28S rDNA) obtained for the new Chinese species facilitated determination of the position of the genus Oregoniplana in the phylogenetic tree of the marine triclads. We report molecular data also for species previously discovered in China, viz. Miroplana shenzhensis and Pentacoelum sinensis, thus enabling us to determine for the first time the phylogenetic position of the genus Miroplana. These new molecular data revealed that Pentacoleum sinensis occupies an unexpected position in the phylogenetic tree. Laboratory cultures of the new Chinese species provided information on food preferences and reproduction. Oregoniplana pantherina exhibits a peculiar kind of locomotion and an unusual resting position in which the animal has three points of contact on either side.

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