Morphological and molecular characterisation of Xiphinema zagrosense sp. n. (Dorylaimida: Longidoridae) from the Zagros Mountains, Iran

Nematology ◽  
2012 ◽  
Vol 14 (4) ◽  
pp. 445-455 ◽  
Author(s):  
Razieh Ghaemi ◽  
Ebrahim Pourjam ◽  
Majid Pedram ◽  
Robert T. Robbins ◽  
Weimin Ye ◽  
...  
Keyword(s):  
New Species ◽  
Large Subunit ◽  
Close Relation ◽  
Small Subunit ◽  
Zagros Mountains ◽  
Rdna Gene ◽  
Small Subunit Rdna ◽  
Group 6 ◽  
Juvenile Stages ◽  
Large Subunit Rdna

Xiphinema zagrosense sp. n. is described based on morphological and molecular characters. The new species belongs to morphospecies group 6 characterised by having two equally developed female genital branches with spines in uterus and a short, rounded tail. The new species is characterised by having spines in the tubular part of the uterus, body length 3.8-5.0 mm, odontostyle length 151-169 μm, odontophore 94-105 μm, conical, dorsally convex tail, four juvenile stages and absence of males. The new species appears closely related to the members of X. pyrenaicum group characterised by a rounded tail with or without an inconspicuous digitate end and a uterus devoid of Z-differentiation but showing spiniform structures. It is compared with X. aceri, X. adenohystherum, X. iranicum, X. mazandaranense, X. nuragicum, X. pyrenaicum, X. robbinsi, X. sphaerocephalum and X. vuittenezi. In addition to morphological and morphometric data, molecular analyses of the near-full-length small subunit rDNA gene (SSU) and large subunit rDNA gene (LSU) D2/D3 placed the new species in close relation with some species belonging to Xiphinema group 6 but differs from other species in the X. pyrenaicum complex.

Morphological and molecular characterisation of Xiphinema mazandaranense n. sp. (Dorylaimida: Longidoridae), a new member of the Xiphinema pyrenaicum species complex

Nematology ◽  
2012 ◽  
Vol 14 (1) ◽  
pp. 109-119 ◽  
Author(s):  
Majid Pedram ◽  
Ebrahim Pourjam ◽  
Robert T. Robbins ◽  
Weimin Ye ◽  
Mohammad Reza Atighi ◽  
...  
Keyword(s):  
New Species ◽  
Species Complex ◽  
Small Subunit ◽  
Molecular Characterisation ◽  
Molecular Analyses ◽  
Small Subunit Rdna ◽  
Group 6 ◽  
Close Relationship ◽  
Juvenile Stages ◽  
Female Genital

Xiphinema mazandaranense n. sp. is described and illustrated. The new species belongs to morphospecies group 6, which is characterised by having two equally developed female genital branches that have spines in the uteri and a short, rounded tail. The new species is characterised by having spines in the tubular portion of the uterus, body 3.7-5.2 mm long, odontostyle 163-173 μm long, odontophore 96-100 μm long, body 62-80 μm diam., rounded tail, four juvenile stages, males rare with three ventromedian supplements next to the adcloacal pair and spicules 85 μm long. The polytomous identification codes of the new species are: A4-B3-C7b-D6-E456-F45-G4-H2-I23-J7b-K2-L1. The new species appears closely related to the members of X. pyrenaicum group which are characterised by a rounded tail with or without an inconspicuous projecting bulge and a uterus devoid of Z-differentiation but showing spiniform structures. The new species differs from members of the X. pyrenaicum group, which includes the recently described X. iranicum, by a more rounded tail without any projection. Beside morphological and morphometric data, molecular analyses of the near-full-length small subunit rDNA gene (SSU) placed the new species in close relationship with some species belonging to Xiphinema morphospecies group 6 and further separated this species from the X. pyrenaicum complex.

Molecular and morphological characterisation of Paurodontella persica n. sp. (Hexatylina: Sphaerulariidae) from soil in Iran

Nematology ◽  
2017 ◽  
Vol 19 (1) ◽  
pp. 57-68 ◽  
Author(s):  
Mehrab Esmaeili ◽  
Ramin Heydari ◽  
Weimin Ye
Keyword(s):  
New Species ◽  
Large Subunit ◽  
Small Subunit ◽  
Body Contour ◽  
Pharyngeal Bulb ◽  
Lateral Field ◽  
Rdna Gene ◽  
Posterior Extension ◽  
Large Subunit Rdna ◽  
A New Species

A new species ofPaurodontella,P. persican. sp., collected from the Alborz rangelands of Iran, is described and illustrated. The new species is characterised by its body length of 506 (416-599) μm and 424 (388-461) μm in female and male, respectively, four incisures in lateral field, lip region annulated and continuous with body contour, total stylet 6.2 (5.5-7.0) μm long. Basal pharyngeal bulb with small posterior extension projecting reaching to the intestine. Excretory pore situated at the level of basal pharyngeal bulb region. Post-uterine sac short, 4.5 (3.0-6.0) μm long and uterus with an offset diverticulum. Tail of both sexes similar, conoid pointed, terminus tapering into a long pointed mucron. Male with adanal bursa and spicules 16.5 (16.0-17.0) μm long. The new species comes close in morphology and morphometrics to four known species of the genus, namelyP. auriculata,P. myceliophaga,P. minutaandP. niger. Molecular analyses of the partial small subunit rDNA gene (SSU), D2-D3 expansion segments of the large subunit rDNA gene (LSU) and internal transcribed spacer (ITS) revealed this to be a new species.

On the phylogeny of Ophiostoma, Ceratocystis s.s., and Microascus, and relationships within Ophiostoma based on partial ribosomal DNA sequences

1993 ◽  
Vol 71 (9) ◽  
pp. 1249-1265 ◽  
Author(s):  
G. Hausner ◽  
J. Reid ◽  
G. R. Klassen
Keyword(s):  
Dna Sequences ◽  
Sequence Data ◽  
Large Subunit ◽  
Small Subunit ◽  
Data Set ◽  
Rdna Sequences ◽  
Morphological Criteria ◽  
Small Subunit Rdna ◽  
Rdna Sequence Data ◽  
Large Subunit Rdna

Phylogenetic analysis of partial rDNA sequences suggests that Ophiostoma should remain the sole genus of the Ophiostomataceae, and this should be the sole family within the Ophiostomatales, whereas Ceratocystis s.s. would be best disposed within the Microascales. Although morphological criteria suggest that the genus Ophiostoma is heterogeneous, analysis of partial small subunit rDNA sequence data shows that Ophiostoma (excluding O. roraimense) represents a monophyletic taxon. Analysis of a partial large subunit rDNA data set, which included sequences from 55 species assignable to Ophiostoma, failed to support the strict subdivision of the genus based on either ascospore characters or the nature of the anamorph. Key words: Ceratocystis, Microascus, Ophiostoma, partial rDNA sequences, phylogeny.

scholarly journals Blastobotrys americana sp. nov., Blastobotrys illinoisensis sp. nov., Blastobotrys malaysiensis sp. nov., Blastobotrys muscicola sp. nov., Blastobotrys peoriensis sp. nov. and Blastobotrys raffinosifermentans sp. nov., novel anamorphic yeast species

2007 ◽  
Vol 57 (5) ◽  
pp. 1154-1162 ◽  
Author(s):  
Cletus P. Kurtzman
Keyword(s):  
Type Strain ◽  
Yeast Species ◽  
Novel Species ◽  
Large Subunit ◽  
Small Subunit ◽  
Its2 Rdna ◽  
Small Subunit Rdna ◽  
Anamorphic Yeast ◽  
Large Subunit Rdna ◽  
Cytochrome Oxidase Ii

The genus Blastobotrys, which now includes species previously assigned to the synonymous genera Arxula and Sympodiomyces, represents the anamorph of the ascosporogenous genus Trichomonascus. Six novel species are proposed for assignment to Blastobotrys. They were detected from their unique nucleotide sequences in large-subunit rDNA, ITS1–5.8S–ITS2 rDNA, mitochondrial small-subunit rDNA and the cytochrome oxidase II gene. The proposed novel species are Blastobotrys americana sp. nov. (type strain NRRL Y-6844T=CBS 10337T; substrate unknown; Kansas, USA), Blastobotrys illinoisensis sp. nov. (type strain NRRL YB-1343T=CBS 10339T; from forest debris; Illinois, USA), Blastobotrys malaysiensis sp. nov. (type strain NRRL Y-6417T=CBS 10336T; from soil; Malaysia), Blastobotrys muscicola sp. nov. (type strain NRRL Y-7993T=CBS 10338T; from moss; Louisiana, USA), Blastobotrys peoriensis sp. nov. (type strain NRRL YB-2290T=CBS 10340T; from a fungus; Peoria, IL, USA) and Blastobotrys raffinosifermentans sp. nov. (type strain NRRL Y-27150T=CBS 6800T; substrate unknown).

Revisiting the phylogeny of Ocellularieae, the second largest tribe within Graphidaceae (lichenized Ascomycota: Ostropales)

Phytotaxa ◽  
2014 ◽  
Vol 189 (1) ◽  
pp. 52 ◽  
Author(s):  
Ekaphan Kraichak ◽  
Sittiporn Parnmen ◽  
Robert Lücking ◽  
EIMY RIVAS PLATA ◽  
André Aptroot ◽  
...  
Keyword(s):  
Molecular Phylogeny ◽  
Rna Polymerase ◽  
Rna Polymerase Ii ◽  
Large Subunit ◽  
Small Subunit ◽  
New Combinations ◽  
New Name ◽  
Small Subunit Rdna ◽  
Large Subunit Rdna ◽  
First Time

We present an updated 3-locus molecular phylogeny of tribe Ocellularieae, the second largest tribe within subfamily Graphidoideae in the Graphidaceae. Adding 165 newly generated sequences from the mitochondrial small subunit rDNA (mtSSU), the nuclear large subunit rDNA (nuLSU), and the second largest subunit of the DNA-directed RNA polymerase II (RPB2), we currently distinguish 218 species among the sequenced material, including the outgroup. This corresponds to almost half the species at this point recognized within this tribe. The newly generated sequences include 23 newly described species and one newly described genus published elsewhere in this volume. For the first time, Sarcographina cyclospora Müll. Arg., in spite of its distinctly lirellate ascomata, is shown to belong in tribe Ocellularieae, as strongly supported sister to Ocellularia inturgescens (Müll. Arg.) Mangold. The following six new combinations are proposed: Melanotrema lynceodes (Nyl.) Rivas Plata, Lücking & Lumbsch, Ocellularia curranii (Vain.) Kraichak, Lücking & Lumbsch, O. khasiana (Patw. & Nagarkar) Kraichak, Lücking & Lumbsch, O. cinerea (Müll. Arg.) Kraichak, Lücking & Lumbsch, O. erodens (R. C. Harris) Kraichak, Lücking & Lumbsch, and O. laeviuscula (Nyl) Kraichak, Lücking & Lumbsch. Further, the new name Ocellularia hernandeziana Kraichak, Lücking & Lumbsch is introduced for Myriotrema ecorticatum. The nomenclatural status of the name Ocellularia microstoma is clarified.

scholarly journals Candida bromeliacearum sp. nov. and Candida ubatubensis sp. nov., two yeast species isolated from the water tanks of Canistropsis seidelii (Bromeliaceae)

2005 ◽  
Vol 55 (5) ◽  
pp. 2213-2217 ◽  
Author(s):  
Carla C. C. Ruivo ◽  
Marc-André Lachance ◽  
Carlos A. Rosa ◽  
Maurício Bacci ◽  
Fernando C. Pagnocca
Keyword(s):  
Yeast Species ◽  
Large Subunit ◽  
Sequence Divergence ◽  
Small Subunit ◽  
Eastern Brazil ◽  
Small Subunit Rdna ◽  
Large Subunit Rdna ◽  
Ascomycetous Yeasts ◽  
Water Tanks ◽  
Type Strains

Strains belonging to two novel yeast species, Candida bromeliacearum and Candida ubatubensis, were isolated from the bromeliad tank of Canistropsis seidelii (Bromeliaceae) in a sandy coastal plain (restinga) ecosystem site in an Atlantic rainforest of south-eastern Brazil. These species were genetically distinct from all other currently accepted ascomycetous yeasts, based on sequence divergence in the D1/D2 domains of the large-subunit rDNA and in the small-subunit rDNA. The species occupy basal positions in the Metschnikowiaceae clade. The type strains are Candida bromeliacearum UNESP 00-103T (=CBS 10002T=NRRL Y-27811T) and Candida ubatubensis UNESP 01-247RT (=CBS 10003T=NRRL Y-27812T).

Isolation and in vitro cultivation of the aphid pathogenic fungusEntomophthora planchoniana

2001 ◽  
Vol 47 (12) ◽  
pp. 1082-1087 ◽  
Author(s):  
Florian M Freimoser ◽  
Annette B Jensen ◽  
Urs Tuor ◽  
Markus Aebi ◽  
Jørgen Eilenberg
Keyword(s):  
Bovine Serum ◽  
Fetal Bovine Serum ◽  
Large Subunit ◽  
Small Subunit ◽  
In Vitro Cultivation ◽  
Small Subunit Rdna ◽  
Fetal Bovine ◽  
Large Subunit Rdna ◽  
First Time

Entomophthora planchoniana is an important fungal pathogen of aphids. Although Entomophthora chromaphidis has been considered a synonym for E. planchoniana, the two species are now separated, and E. planchoniana is reported not to grow in vitro. In this paper, we describe for the first time the isolation and cultivation of this species. Entomophthora planchoniana was isolated from a population of Ovatus crataegarius (Homoptera, Aphididae), which was infected by E. planchoniana only. The isolates did not sporulate, but the sequence of the small subunit rDNA and the restriction fragment length polymorphism patterns of the first part of the large subunit rDNA and the ITS II region confirm that the isolates were E. planchoniana. The isolated fungus grew in a medium consisting of Grace's insect cell culture medium supplemented with lactalbumin hydrolysate, yeastolate, and 10% fetal bovine serum or in GLEN medium with 10% fetal bovine serum. Vegetative cells of E. planchoniana were long and club-shaped and did not stain with Calcofluor, thus suggesting that they were protoplasts.Key words: biological control, entomopathogen, Entomophthorales, protoplast, Zygomycetes.

A new species of the genus Tripylina Brzeski, 1963 (Nematoda: Enoplida: Trischistomatidae) from Shanxi province, China

Zootaxa ◽  
2013 ◽  
Vol 3630 (3) ◽  
pp. 561-570 ◽  
Author(s):  
YU MEI XU ◽  
ZENG QI ZHAO ◽  
JIAN MING WANG ◽  
JING WU ZHENG
Keyword(s):  
New Species ◽  
Large Subunit ◽  
Ventral Side ◽  
Small Subunit ◽  
Shanxi Province ◽  
Cervical Region ◽  
Large Subunit Rdna ◽  
Using Data ◽  
A New Species ◽  
Shape And Size

Tripylina puxianensis n. sp. is described and illustrated from Shanxi province, China. It is characterized by having a triangular dorsal tooth, pointing towards the ventral side, anterior to two sub-ventral teeth, with dorsal and sub-ventral teeth similar in shape and size; one ventromedian seta in the cervical region; vulva with protruding lips, absence of post-uterine sac; and a pair of setae on the tail; male not found; female body length 1048–1331 μm, a = 25.5–33.8, b = 5.5–6.2, c = 14.4–23.1, c' = 2.1–3.5 and V = 56.1–68.5%. The phylogenetic relationships among species in the genus Tripylina were analyzed using data from the SSU (small subunit) and D2/D3 expansion segments of the LSU (large subunit) rDNA. These analyses confirmed that T. puxianensis n. sp. is different from other members of the genus for which sequences are available.

Oscheius carolinensis n. sp. (Nematoda: Rhabditidae), a potential entomopathogenic nematode from vermicompost

Nematology ◽  
2010 ◽  
Vol 12 (1) ◽  
pp. 121-135 ◽  
Author(s):  
Andrea Torres-Barragan ◽  
Weimin Ye ◽  
Yasmin Cardoza
Keyword(s):  
New Species ◽  
Dna Sequences ◽  
Pieris Rapae ◽  
Biological Control Agent ◽  
Entomopathogenic Nematode ◽  
Large Subunit ◽  
Small Subunit ◽  
Lateral Field ◽  
Rdna Gene ◽  
Morphological Studies

AbstractOscheius carolinensis n. sp. (Rhabditidae) was recovered through the Galleria bait method from vermicompost produced in Raleigh, NC, USA. Morphological studies with light microscopy and scanning electron microscopy, as well as molecular analyses of the near-full-length small subunit rDNA gene (SSU), D2/D3 expansion segments of the large subunit rDNA gene (LSU) and internal transcribed spacer (ITS), revealed this as a new species, described herein as Oscheius carolinensis n. sp. The new species is characterised by a combination of characters including its unique DNA sequences, amphimictic reproduction, six separate lips with bristle-like sensilla, lateral field with four lines, leptoderan and open male bursa, arrangement of bursal papillae 1 + 1 + 1/3 + 3 + ph, evenly spaced first, second and third papillae, and separate spicules that are distally shaped like a crochet needle. Oscheius carolinensis n. sp. belongs to the Insectivorus-group and is closest to O. colombianus, O. chongmingensis n. comb., O. insectivorus and O. lucianii. A Bacillus-like bacterium appears to be associated with this nematode, based on our microscopic and SEM observations. Exposed Galleria larvae were killed within 5 days and numerous nematodes were recovered from the cadavers within 48 h. Preliminary tests revealed that this nematode is capable of infecting at least two other insect species (Pieris rapae and Tenebrio molitor) under laboratory conditions and therefore has potential as a biological control agent. The status of Heterorhabditidoides chongmingensis is discussed, the genus is proposed as a junior synonym of Oscheius, and O. chongmingensis n. comb. is proposed.

Novel contributions to the peritrich family Vaginicolidae (Protista: Ciliophora), with morphological and phylogenetic analyses of poorly known species of Pyxicola, Cothurnia and Vaginicola

2019 ◽  
Vol 187 (1) ◽  
pp. 1-30 ◽  
Author(s):  
Borong Lu ◽  
Lifang Li ◽  
Xiaozhong Hu ◽  
Daode Ji ◽  
Khaled A S Al-Rasheid ◽  
...  
Keyword(s):  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Small Subunit ◽  
Its2 Region ◽  
5.8S Rdna ◽  
Small Subunit Rdna ◽  
Distinct Lineage ◽  
Large Subunit Rdna ◽  
First Time

Abstract The classification of loricate peritrich ciliates is difficult because of an accumulation of several taxonomic problems. In the present work, three poorly described vaginicolids, Pyxicola pusilla, Cothurnia ceramicola and Vaginicola tincta, were isolated from the surface of two freshwater/marine algae in China. In our study, the ciliature of Pyxicola and Vaginicola is revealed for the first time, demonstrating the taxonomic value of infundibular polykineties. The small subunit rDNA, ITS1-5.8S rDNA-ITS2 region and large subunit rDNA of the above species were sequenced for the first time. Phylogenetic analyses based on these genes indicated that Pyxicola and Cothurnia are closely related. The present study suggested that the loricate species probably represent a distinct lineage in peritrich evolution and both genera Cothurnia and Thuricola are monophyletic. Pyxicola pusilla, Cothurnia ceramicola and Vaginicola tincta are recircumscribed.

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