scholarly journals A centuries old problem in nephtheid taxonomy approached using DNA data (Coelenterata: Alcyonacea)

2007 ◽  
Vol 76 (3) ◽  
pp. 153-178 ◽  
Author(s):  
L.P. van Ofwegen ◽  
D.S.J. Groenenberg

The current centuries old classification of the family Nephtheidae is still mostly based on colony morphology. In this family the Indo-Pacifc genera Litophyton, Nephthea, Dendronephthya and Stereonephthya, and the Atlantic genus Neospongodes form a complex mix of closely related, poorly described species which cannot be recognized using only colony morphology. Attempts with the more modern approach of comparing skeleton composition (sclerites) have been only partly successful because of the extreme variation of sclerite forms present in these genera. The genus Chromonephthea Van Ofwegen, 2005, introduced for several species previously assigned to Dendronephthya, Nephthea and Stereonephthya, was established with sclerite morphology, but the true generic status of the majority of the nominal species of these genera remained unresolved. In an attempt to clarify the phylogenetic relationships between Litophyton, Nephthea, Stereonephthya and Chromonephthea fourteen specimens, unidentified but certainly belonging to these genera, have been used in molecular analyses. All analyses supported two clades, which could be related to the shape of the sclerites present in the polyp stalks. One clade contained the specimens with characters for Stereonephthya along with the Chromonephthea specimen as a sister group. The other clade had a ‘true’ Nephthea and Litophyton together with the specimens that could not be placed in any particular genus using the old classification criteria. The consequences of these results for nephtheid classification are discussed.

2018 ◽  
Vol 16 (3) ◽  
Author(s):  
Dahiana Arcila ◽  
Paulo Petry ◽  
Guillermo Ortí

ABSTRACT Characiformes is an order of freshwater fishes that includes many commercially important and emblematic species from South America and Africa, such as the popular piranhas, hatchetfishes, African tiger fishes and tetras. The order is split into two suborders with a total of 24 families, 282 genera and ca. 2,100 species. Here, we present an expanded phylogeny of characiform fishes, including data for 520 species and three genes (12S, 16S and RAG1), and the recently described family Tarumaniidae, which has not been examined by previous molecular analysis. Although our genetic coverage is limited to three gene fragments, the tree inferred based on maximum likelihood and Bayesian inference supports the monophyly of all characiform families and is largely congruent with results from recent studies that sampled less taxa but more genes. Also in agreement with a morphological hypothesis, our results strongly support the sister-group relationships between the family Tarumaniidae and Erythrinidae. Based on our results and that of the other molecular analyses, we propose a revised circumscription of the superfamily Erythrinoidea to include the families Tarumaniidae and Erythrinidae only.


2021 ◽  
Vol 20 (7) ◽  
pp. 911-927
Author(s):  
Lucia Muggia ◽  
Yu Quan ◽  
Cécile Gueidan ◽  
Abdullah M. S. Al-Hatmi ◽  
Martin Grube ◽  
...  

AbstractLichen thalli provide a long-lived and stable habitat for colonization by a wide range of microorganisms. Increased interest in these lichen-associated microbial communities has revealed an impressive diversity of fungi, including several novel lineages which still await formal taxonomic recognition. Among these, members of the Eurotiomycetes and Dothideomycetes usually occur asymptomatically in the lichen thalli, even if they share ancestry with fungi that may be parasitic on their host. Mycelia of the isolates are characterized by melanized cell walls and the fungi display exclusively asexual propagation. Their taxonomic placement requires, therefore, the use of DNA sequence data. Here, we consider recently published sequence data from lichen-associated fungi and characterize and formally describe two new, individually monophyletic lineages at family, genus, and species levels. The Pleostigmataceae fam. nov. and Melanina gen. nov. both comprise rock-inhabiting fungi that associate with epilithic, crust-forming lichens in subalpine habitats. The phylogenetic placement and the monophyly of Pleostigmataceae lack statistical support, but the family was resolved as sister to the order Verrucariales. This family comprises the species Pleostigma alpinum sp. nov., P. frigidum sp. nov., P. jungermannicola, and P. lichenophilum sp. nov. The placement of the genus Melanina is supported as a lineage within the Chaetothyriales. To date, this genus comprises the single species M. gunde-cimermaniae sp. nov. and forms a sister group to a large lineage including Herpotrichiellaceae, Chaetothyriaceae, Cyphellophoraceae, and Trichomeriaceae. The new phylogenetic analysis of the subclass Chaetothyiomycetidae provides new insight into genus and family level delimitation and classification of this ecologically diverse group of fungi.


1895 ◽  
Vol 2 (12) ◽  
pp. 529-539 ◽  
Author(s):  
H. A. Nicholson ◽  
J. E. Marr

Since the remarkable paper by Professor Lapworth “On an Improved Classification of the Rhabdophora” was published in the Geological Magazine for 1873, a great deal of fresh information has been gathered as to these interesting fossils; but the classification given in that paper, though to some extent confessedly artificial, is still generally adhered to. Observations made by the authors in recent years lead them to suppose that that classification will in the future undergo considerable modification; but in the present state of our knowledge it serves a purpose so useful, that it is not our intention to propose any immediate change in it. Our object, on the other hand, is to bring forward certain conclusions which we have independently reached, and which will, we believe, enhance the value of Graptolites to the stratigraphical geologist, and lead to results important to the biologist. Our conclusions are based upon an examination of a large number of forms generally referred to the family Dichograptidæ; but, as we propose very briefly to indicate, they affect the relationships of Graptolites belonging to other families also.


2001 ◽  
Vol 32 (1) ◽  
pp. 45-89 ◽  
Author(s):  
Kelly B. Miller

AbstractCharacters from adult morphology are analyzed cladistically to infer the phylogeny of the family Dytiscidae. The analysis is based on examination of 233 species of Dytiscidae and several outgroup taxa including members of Noteridae, Amphizoidae, Hygrobiidae and Carabidae. Members of all currently recognized tribes of Dytiscidae are represented except Anisomeriini Brinck, Hydronebriini Guignot and Carabhydrini Watts. Emphasis is placed on identifying informative characters from the female genital system that comprise 34 of the resulting 101 total characters. The consensus of the most parsimonious trees is well resolved and supports recognition of ten subfamilies of Dytiscidae including; Matinae van den Branden, Laccophilinae Gistel, Coptotominae van den Branden, Copelatinae Erichson, Hydroporinae Aubé, Agabinae Thomson, Colymbetinae Erichson, Lancetinae van den Branden and Dytiscinae Leach. Also, Hydrodytes Miller, NEW GENUS, is erected and placed in its own subfamily, Hydrodytinae, NEW SUBFAMILY, to include two species previously placed in Agaporomorphus Zimmermann (Copelatinae), H. opalinus (Zimmermann) (NEW COMBINATION) and H. dodgei (Young) (NEW COMBINATION). Hydrodytinae is sister group to Hydroporinae and is diagnosed by the presence of anterior apodemes on the gonocoxae, several characters of the metendosternite (each synapomorphic with Hydroporinae), lack of pseudotetramerous pro- and mesotarsi, lack of a declivitous prosternum and prosternal process, the scutellum visible with the elytra closed (all plesiomorphic), the rami of the female genitalia sinuate and dorsally with an opalescent sheen (each autapomorphic for Hydrodytinae). Matinae is resolved as the sister group to the remaining Dytiscidae. Hyphydrini Sharp is found to be paraphyletic with respect to Pachydrini Biström, Nilsson and Wewalka, and the latter is relegated to a junior subjective synonym of the former (NEW SYNONYMY). Hydroporini Aubé and Hygrotini Portevin are found to be para- or polyphyletic. No changes are made to the classification of these taxa since character evidence is relatively weak, and taxon sampling within Hydroporinae is inadequate to justify changes. Carabdytes Balke, Hendrich and Wewalka is found to be the sister taxon to the remaining Colymbetinae, and because of its unique combination of characters and phylogenetic placement it is included in its own tribe, Carabdytini Pederzani (RESURRECTED). All other examined tribes of Dytiscidae are monophyletic. The female genitalia are described and figured for numerous taxa across the family, and numerous other characters are described and figured. The evolution of various features of the female genitalia within Dytiscidae is discussed. The resulting phylogenetic hypothesis is compared and contrasted with other phylogenetic proposals.


2005 ◽  
Vol 37 (1) ◽  
pp. 67-75 ◽  
Author(s):  
Mats WEDIN ◽  
Heidi DÖRING ◽  
Kristina KÖNBERG ◽  
Gunnar GILENSTAM

The family Stictidaceae (Ostropales, Ascomycota) contains both lichenized and non-lichenized fungi. Here, we test if Conotrema (lichenized) and Stictis (non-lichenized) as currently delimited are distinct monophyletic genera, by parsimony and parsimony jackknifing analyses of combined nuclear rDNA (ITS and partial LSU rDNA) and mitochondrial SSU rDNA sequence data matrices. The study includes four species of Stictis, three species of Conotrema, and representatives of the related Schizoxylon (lichenized), Odontotrema, Carestiella (at least sometimes associated with algae), Cryptodiscus and Thelotrema (lichenized). In all analyses, the Conotrema species were nested within Stictis with high support. Thus, we conclude that Conotrema are only lichenized representatives of Stictis. The type species of the two generic names, C. urceolatum and S. radiata, are sister taxa in our analyses. Furthermore, the analysis gave no support for the present infrageneric classification of Stictis. Carestiella socia (the type of Carestiella) and the two representatives of Schizoxylon studied were also nested within Stictis s. lat. The Odontotremataceae is the sister group to the Stictidaceae, and Cryptodiscus foveolaris groups with Thelotrema rather than with the Stictidaceae. We conclude that lichenization in the Stictidaceae does not characterize natural groups, and that Conotrema should be considered a synonym to Stictis, as predicted by anatomical characteristics. The new combinations Stictis urceolatum and Stictis populorum are made.


Author(s):  
Uspenskaya Inna

The article is devoted to the systematization of the criteria of the classification of concert music for violin, in which, along with the traditional genre criteria, stylistic and textured ones are highlighted It is noted that such a comprehensive consideration allows solving a number of tasks of both research and performance profile. Based on the modern approach to the genre system, the article extrapolates it to concert violin music, which covers the range from solo miniature pieces to concerts for violin and symphony orchestra. It is emphasized that the least researched is the question of the stylistics of concert violin genres, constituted according to the same parameters as the musical texture – horizontal, vertical and depth (E. Nazaikinsky). The article proposes an original classification of the genre-stylistic complex of concert violin music, that is based on the following factors: the style of the highest levels (epoch-making, national, specific), genre (the complex of existing genres of violin music), texture in the aspect of stylistics (the main “identification mark” of the genre) and the style of concretized levels (author’s individual level and separate work). Considering the first classification criterion – the genre one, its universal nature it should be noted, covering two levels of the concert violin music system: functional – performers, the way of performance – and semantic-compositional – genre content and style (I. Tukova). The style criterion acts as a parallel to the genre criterion and means the differentiation of the genre system according to the signs of introversion (style as an introvert category, according to V. Kholopova). Here the phenomena and concepts are formed that cover all levels of the style hierarchy in its distribution to concert music for violin – from the historical to the author’s individual and even the style of a separate piece. It is emphasized that the least explored area of violin concert is its stylistics, which is closely related to its texture – the “external form” of the genre manifestation (L. Shapovalova). The stylistic aspect in violin music-making is reviewed in the article according to the same parameters as the texture aspect, since they largely coincide (E. Nazaikinsky). We are talking about the factors of horizontal (the types of texture that form the stylistic relief of the text of the work), vertical (the combination of textures in their different stylistic meanings), depth (based on the author’s handwriting of his connections with the texture and style sources – historical, national ones, characteristic of certain violin schools and directions). It is noted that this refers to both sides of the genre-stylistic system of concert music for violin (with the participation of a violin) – functional and semanticcompositional – and is realized in the following variants of textured style: solo orchestra (violin or several violins with an orchestra); solo ensemble (the same accompanied by a chamber ensemble); solo piano (violin and piano duet); solo violin (violin without accompaniment). It is proved that all these textured and stylistic varieties of concert violin music are combined on the basis of the idea of a concert style – “competition-agreement” (B. Asafiev) of the participants in the act of playing music. The measure of the correlation of performing forces in a concert dialogue ultimately determines the choice of criteria for classifying its varieties in their extrapolation to a concert violin. The article reveals the features of all four above-named options for this dialogue, taking into account their possible combination. It is noted that this combination is most fully reflected in a violin concert with an orchestra, where other forms of concert appear occasionally – solo without accompaniment (solo cadenzas), ensemble (microdialogues of the violin and other orchestral instruments). The classification criteria highlighted in the article, first of all texture-stylistic ones, together form the following system of genres of concert music for violin (with the participation of a violin), considered from the standpoint of: 1) concert dialogue in its textured manifestations (gradation in the dominance of the soloist instrument over accompaniment or, conversely, accompaniment over a solo part); 2) the principle of intimacy, bordering on concertness, but meaning the parity of the performing parts (a distinctive feature of chamber ensembles, in which it stands out as the leading violin part); 3) the self-sufficiency of the violin as a universal instrument suitable for the implementation of concert dialogue in the solo form of music-making (a wide range of genre forms of violin music – from miniatures and their cycles to suites, partitas and solo sonatas). It is noted that, in the future, the classification patterns identified in this article can be considered using the example of specific samples belonging to a particular genre group. The author of this article plans to do this on the basis of concert genres of violin music created by the composers of the Kharkiv school. Focusing on classical and modern samples, as well as the traditions of the Kharkiv stringbow performing school represented by A. Leshchinsky, A. Yuriev, S. Kocharyan, G. Averyanov, E. Shchelkanovtseva, L. Kholodenko, E. Kupriyanenko and other string players, Kharkiv authors interpret the concert-violin style in various ways, revealing in it both the general (the “image” of the violin in the system of specific instrumental styles), and the special (the styles of the national and regional schools), as well as the unique, individual (the representations of the latter are their best works).


1992 ◽  
Vol 70 (7) ◽  
pp. 1425-1439 ◽  
Author(s):  
M. Riutort ◽  
K. G. Field ◽  
J. M. Turbeville ◽  
R. A. Raff ◽  
J. Baguña

Enzyme polymorphism and 18S rRNA sequences have been used to measure genetic distances between several species of Platyhelminthes belonging to different taxa including freshwater and parasitic forms. We have used these data to address unresolved phylogenetic and taxonomic problems with this group at several different levels ranging from phylum to subgenus. The main conclusions supported by the data seem to be the following: (i) 18S rRNA data strongly suggest that the Platyhelminthes are monophyletic, being a sister-group to the other Eubilateria; a similar conclusion applies to the Paludicola as to the rest of Platyhelminthes studied; (ii) 18S rRNA and enzyme data indicate that the family Dugesiidae of the Paludicola is monophyletic with respect to the other two families, Planariidae and Dendrocoelidae; and (iii) the subgenus Schmidtea of the genus Dugesia is monophyletic with respect to the other two subgenera of Dugesia, Dugesia and Girardia. Other aspects of the relationships of subgenera and families could not be satisfactorily resolved, but point to new problems that should be addressed in future studies, namely the taxonomic status of the family Planariidae and the relationships between the genera and subgenera of the family Dugesiidae.


2020 ◽  
Vol 3 (4) ◽  
pp. 382-389
Author(s):  
CORENTIN JOUAULT ◽  
JEAN-MARC POUILLON ◽  
ANDRÉ NEL

A new wood wasp, Cratosirex sennlaubi gen. et sp. nov., is described and figured from one specimen collected from the Lower Cretaceous Crato Formation in northeastern Brazil. This new genus is placed in the new siricid subfamily Cratosiricinae subfam. nov., based on a combination of plesiomorphic and autapomorphic characters. The presence of small and sub-equal forewing cells 1R1 and 2R1 is a synapomorphy with the extant subfamily Siricinae, absent in the other extinct subfamilies †Auliscinae and †Gigasiricinae, supporting a sister group relationships with the Siricinae. Our new discovery expands the distribution range of Siricidae fossil records, highlights the antiquity of the family, and emphasizes the need for more studies of this particular insect lineage in the Mesozoic deposits. Currently, all the representatives of the crown group of the extant Siricidae are Cenozoic.


Parasitology ◽  
1963 ◽  
Vol 53 (1-2) ◽  
pp. 95-107 ◽  
Author(s):  
Lucila Arcay de Peraza

This work contains the description of two new Coccidia parasitic in the South American lizard Cnemidophorus lemniscatus lemniscatus. One is identified as Eimeria flaviviridis americana subsp.nov., which is described and discussed in relation to the other species recorded from sauria. The other is Hoarella garnhami gen.nov., sp.nov., whose position in the family Eimeriidae necessitated a revision of the classification of the Coccidia Eimeriidae.I wish to acknowledge the help and encouragement I received from Professor P. C. C. Garnham, in whose department this work was carried out. My thanks are also due to Dr Cecil Hoare for his private communications and assistance in the interpretation of histological specimens. The author is grateful for co-operation of the School's Photograph Staff and to members of the staff of the Department of Parasitology, especially to Mr P. E. Nesbitt for his valuable sections. Finally, the author is indebted to the Consejo de Desarrollo Cientifico y Humanístico de la Universidad Central, Caracas, for their assistance in the form of a scholarship during the tenure of which this work was produced.


1988 ◽  
Vol 66 (12) ◽  
pp. 2797-2810 ◽  
Author(s):  
François Chapleau ◽  
Allen Keast

This article presents the phylogenetic conclusions of an osteological study of species belonging to the subfamilies (Soleinae and Achirinae) of the dextral flatfish family Soleidae (Pieuronectiformes; Soleoidei). A cladistic analysis of the data revealed that the subfamilies, but not the family, are monophyletic. The Soleinae were found to be more closely related to the other soleoid family, the Cynoglossidae, than to the Achirinae. If we accept the principle that only monophyletic groups are to be admitted into Linnean classification, it is suggested that the two subfamilies be raised to the family level. The anatomical data led to the proposal (with caution) that the sister group of the achirid–soleid–cynoglossid lineage is the pleuronectid subfamily Samarinae. Consequently, it is suggested that the suborder Soleoidei be eliminated by incorporating its three families into the Pleuronectoidei which becomes monophyletic. Also, it is proposed that the Pleuronectid subfamilies (Pleuronectinae, Poecilopsettinae, Paralichthodinae, Rhombosoleinae, Samarinae) be raised to the family level. However, since the monophyletic status of these taxa is dubious (except for the Samarinae) any hypothesis including them must await a proper cladistic analysis of their intra- and inter-relationships.


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