Didymella eriobotryae sp. nov. (Didymellaceae) and Arthrinium arundinis (Apiosporaceae) from fruit of Eriobotrya japonica (loquat) in China

Phytotaxa ◽  
2018 ◽  
Vol 382 (1) ◽  
pp. 136 ◽  
Author(s):  
KASUN M. THAMBUGALA ◽  
KEVIN D. HYDE ◽  
JIN-FENG ZHANG ◽  
ZUO-YI LIU
Keyword(s):  
Dna Sequence ◽  
New Record ◽  
Sequence Data ◽  
Eriobotrya Japonica ◽  
Dna Sequence Data ◽  
Wide Range

Arthrinium (Apiosporaceae) and Didymella (Didymellaceae) are species-rich genera and most of the members in these genera are plant pathogenic, saprobic or endophytic species that have been recorded from a wide range of hosts. The present study introduces Didymella eriobotryae sp. nov. and a new record of Arthrinium arundinis which are associated with decaying fruit of Eriobotrya japonica in China. Morphology and DNA sequence data are employed to determine the taxonomic placement of these species.

Proteaceae: Diverse approaches toward new syntheses

1998 ◽  
Vol 11 (4) ◽  
pp. 631 ◽  
Author(s):  
Barbara G. Briggs
Keyword(s):  
Dna Sequence ◽  
Reproductive Biology ◽  
Fossil Record ◽  
Sequence Data ◽  
Large Body ◽  
Dna Sequence Data ◽  
Wide Range ◽  
Phylogenetic Hypotheses

The 1996 Commemorative Proteaceae Conference drew attention to the large body of work proceeding on all southern continents, the extensive and informative fossil record, and the wide range of studies in ecology and reproductive biology. DNA sequence data and organogeny are producing major insights at the upper taxonomic levels, new phylogenetic hypotheses and classifications are emerging in respect of the recognition of subfamilies and the relationships and composition of tribes, and there is also evidence from morphology and DNA sequence data that several genera are paraphyletic.

Multi-gene phylogeny and morphotaxonomy of Phaeosphaeria ampeli sp. nov. from Ficus ampelas and a new record of P. musae from Roystonea regia

Phytotaxa ◽  
2019 ◽  
Vol 406 (2) ◽  
pp. 111-128 ◽  
Author(s):  
DANUSHKA S. TENNAKOON ◽  
RAJESH JEEWON ◽  
ELENI GENTEKAKI ◽  
CHANG-HSIN KUO ◽  
KEVIN D. HYDE
Keyword(s):  
New Species ◽  
Bayesian Inference ◽  
Maximum Likelihood ◽  
Dna Sequence ◽  
New Record ◽  
Sequence Data ◽  
Similar Species ◽  
Dna Sequence Data ◽  
Phylogenetic Affinities ◽  
A New Species

Phaeosphaeria ampeli is a new species collected from dead leaves of Ficus ampelas in Fanlu Township area, Dahu forest, Chiayi, Taiwan. Phaeosphaeria musae is a new record from dead leaves of Roystonea regia. Both species are described, illustrated and compared with similar species. Phaeosphaeria ampeli is distinguished from other Phaeosphaeria species based on distinct size differences of the ascomata, asci, ascospores and analyses of DNA sequence data. Maximum parsimony, maximum likelihood and Bayesian inference analyses of combined ITS, LSU, SSU and tef1-α sequence data are used to clarify the phylogenetic affinities of the species.

scholarly journals Unravelling unexplored diversity of cercosporoid fungi (Mycosphaerellaceae, Mycosphaerellales, Ascomycota) in tropical Africa

MycoKeys ◽  
2021 ◽  
Vol 81 ◽  
pp. 69-138
Author(s):  
Yalemwork Meswaet ◽  
Ralph Mangelsdorff ◽  
Nourou S. Yorou ◽  
Meike Piepenbring
Keyword(s):  
West Africa ◽  
Dna Sequence ◽  
Vigna Unguiculata ◽  
Sequence Data ◽  
Morphological Characteristics ◽  
Molecular Sequence Data ◽  
Dna Sequence Data ◽  
Wide Range ◽  
Cercosporoid Fungi ◽  
First Time

Cercosporoid fungi (Mycosphaerellaceae, Mycosphaerellales, Ascomycota) are one of the largest and most diverse groups of hyphomycetes causing a wide range of diseases of economically important plants as well as of plants in the wild. Although more than 6000 species are known for this group, the documentation of this fungal group is far from complete. Especially in the tropics, the diversity of cercosporoid fungi is poorly known. The present study aims to identify and characterise cercosporoid fungi collected on host plants belonging to Fabaceae in Benin, West Africa. Information on their morphology, host species and DNA sequence data (18S rDNA, 28S rDNA, ITS and tef1) is provided. DNA sequence data were obtained by a simple and non-culture-based method for DNA isolation which has been applied for cercosporoid fungi for the first time in the context of the present study. Among the loci used for the phylogenetic analysis, tef1 provided the best resolution together with the multigene dataset. Species delimitation in many cases, however, was only possible by combining molecular sequence data with morphological characteristics. Based on forty specimens recently collected in Benin, 18 species are presented with morphological descriptions, illustrations and sequence data. Among these, six species in the genus Cercospora and two species in Pseudocercospora are proposed as species new to science. The newly described species are Cercospora (C.) beninensis on Crotalaria macrocalyx, C. parakouensis on Desmodium tortuosum, C. rhynchophora on Vigna unguiculata, C. vignae-subterraneae on Vigna subterranea, C. tentaculifera on Vigna unguiculata, C. zorniicola on Zornia glochidiata, Pseudocercospora sennicola on Senna occidentalis and Pseudocercospora tabei on Vigna unguiculata. Eight species of cercosporoid fungi are reported for Benin for the first time, three of them, namely C. cf. canscorina, C. cf. fagopyri and C. phaseoli-lunati are new for West Africa. The presence of two species of cercosporoid fungi on Fabaceae previously reported from Benin, namely Nothopassalora personata and Passalora arachidicola, is confirmed.

Saprobic Lophiostomataceae (Dothideomycetes): Pseudolophiostoma mangiferae sp. nov. and Neovaginatispora fuckelii, a new record from Mangifera indica

Phytotaxa ◽  
2018 ◽  
Vol 364 (2) ◽  
pp. 157 ◽  
Author(s):  
DANUSHKA SANDARUWAN TENNAKOON ◽  
CHANG-HSIN KUO ◽  
RAJESH JEEWON ◽  
KASUN MADHUSANKA THAMBUGALA ◽  
KEVIN DAVID HYDE
Keyword(s):  
Dna Sequence ◽  
New Record ◽  
Sequence Data ◽  
Mangifera Indica ◽  
Morphological Data ◽  
Similar Species ◽  
Bayesian Analyses ◽  
Dna Sequence Data ◽  
Phylogenetic Affinities ◽  
A New Species

Pseudolophiostoma mangiferae, isolated from a dead stem of Mangifera indica, collected in Fanlu Township area, Dahu village in Chiayi, Taiwan (Elevation 634 m) and is introduced as a new species based on morphological data and DNA sequence analyses. Maximum parsimony, Maximum likelihood and Bayesian analyses of combined ITS, LSU, SSU and tef1-α sequence data were performed to clarify the phylogenetic affinities of the species. Pseudolophiostoma mangiferae is distinguished from the other Pseudolophiostoma species based on distinct size differences in ascomata, asci, ascospores and DNA sequence data. In addition, Neovaginatispora fuckelii is described as a new record from Taiwan. Both species are compared with other similar species and comprehensive descriptions and micrographs are provided.

scholarly journals Sequence data from isolated lichen-associated melanized fungi enhance delimitation of two new lineages within Chaetothyriomycetidae

2021 ◽  
Vol 20 (7) ◽  
pp. 911-927
Author(s):  
Lucia Muggia ◽  
Yu Quan ◽  
Cécile Gueidan ◽  
Abdullah M. S. Al-Hatmi ◽  
Martin Grube ◽  
...  
Keyword(s):  
Sequence Data ◽  
Single Species ◽  
Sister Group ◽  
Asexual Propagation ◽  
Dna Sequence Data ◽  
Wide Range ◽  
The Family ◽  
Rock Inhabiting Fungi ◽  
Stable Habitat

AbstractLichen thalli provide a long-lived and stable habitat for colonization by a wide range of microorganisms. Increased interest in these lichen-associated microbial communities has revealed an impressive diversity of fungi, including several novel lineages which still await formal taxonomic recognition. Among these, members of the Eurotiomycetes and Dothideomycetes usually occur asymptomatically in the lichen thalli, even if they share ancestry with fungi that may be parasitic on their host. Mycelia of the isolates are characterized by melanized cell walls and the fungi display exclusively asexual propagation. Their taxonomic placement requires, therefore, the use of DNA sequence data. Here, we consider recently published sequence data from lichen-associated fungi and characterize and formally describe two new, individually monophyletic lineages at family, genus, and species levels. The Pleostigmataceae fam. nov. and Melanina gen. nov. both comprise rock-inhabiting fungi that associate with epilithic, crust-forming lichens in subalpine habitats. The phylogenetic placement and the monophyly of Pleostigmataceae lack statistical support, but the family was resolved as sister to the order Verrucariales. This family comprises the species Pleostigma alpinum sp. nov., P. frigidum sp. nov., P. jungermannicola, and P. lichenophilum sp. nov. The placement of the genus Melanina is supported as a lineage within the Chaetothyriales. To date, this genus comprises the single species M. gunde-cimermaniae sp. nov. and forms a sister group to a large lineage including Herpotrichiellaceae, Chaetothyriaceae, Cyphellophoraceae, and Trichomeriaceae. The new phylogenetic analysis of the subclass Chaetothyiomycetidae provides new insight into genus and family level delimitation and classification of this ecologically diverse group of fungi.

scholarly journals DNA sonification for public engagement in bioinformatics

2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Heleen Plaisier ◽  
Thomas R. Meagher ◽  
Daniel Barker
Keyword(s):  
Dna Sequence ◽  
Public Engagement ◽  
Sequence Data ◽  
Sensory Perception ◽  
Data Representation ◽  
Sequence Information ◽  
Dna Sequence Data ◽  
Public Events ◽  
Dna Base ◽  
Alternative Means

Abstract Objective Visualisation methods, primarily color-coded representation of sequence data, have been a predominant means of representation of DNA data. Algorithmic conversion of DNA sequence data to sound—sonification—represents an alternative means of representation that uses a different range of human sensory perception. We propose that sonification has value for public engagement with DNA sequence information because it has potential to be entertaining as well as informative. We conduct preliminary work to explore the potential of DNA sequence sonification in public engagement with bioinformatics. We apply a simple sonification technique for DNA, in which each DNA base is represented by a specific note. Additionally, a beat may be added to indicate codon boundaries or for musical effect. We report a brief analysis from public engagement events we conducted that featured this method of sonification. Results We report on use of DNA sequence sonification at two public events. Sonification has potential in public engagement with bioinformatics, both as a means of data representation and as a means to attract audience to a drop-in stand. We also discuss further directions for research on integration of sonification into bioinformatics public engagement and education.

A new Liopeltis Fitzinger, 1843 (Squamata: Colubridae) from Pulau Tioman, Peninsular Malaysia

Zootaxa ◽  
2020 ◽  
Vol 4766 (3) ◽  
pp. 472-484
Author(s):  
HANNAH E. SOM ◽  
L. LEE GRISMER ◽  
PERRY L. JR. WOOD ◽  
EVAN S. H. QUAH ◽  
RAFE M. BROWN ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
New Species ◽  
Dna Sequence ◽  
Rare Species ◽  
Sequence Data ◽  
Peninsular Malaysia ◽  
Tropical Asia ◽  
Dna Sequence Data ◽  
A New Species ◽  
Lines Of Evidence

Liopeltis is a genus of poorly known, infrequently sampled species of colubrid snakes in tropical Asia. We collected a specimen of Liopeltis from Pulau Tioman, Peninsular Malaysia, that superficially resembled L. philippina, a rare species that is endemic to the Palawan Pleistocene Aggregate Island Complex, western Philippines. We analyzed morphological and mitochondrial DNA sequence data from the Pulau Tioman specimen and found distinct differences to L. philippina and all other congeners. On the basis of these corroborated lines of evidence, the Pulau Tioman specimen is described as a new species, L. tiomanica sp. nov. The new species occurs in sympatry with L. tricolor on Pulau Tioman, and our description of L. tiomanica sp. nov. brings the number of endemic amphibians and reptiles on Pulau Tioman to 12. 

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