Distribution-free models for latent mixed population responses in a longitudinal setting with missing data

2018 ◽  
Vol 28 (10-11) ◽  
pp. 3273-3285 ◽  
Author(s):  
Hui Zhang ◽  
Li Tang ◽  
Yuanyuan Kong ◽  
Tian Chen ◽  
Xueyan Liu ◽  
...  

Many biomedical and psychosocial studies involve population mixtures, which consist of multiple latent subpopulations. Because group membership cannot be observed, standard methods do not apply when differential treatment effects need to be studied across subgroups. We consider a two-group mixture in which membership of latent subgroups is determined by structural zeroes of a zero-inflated count variable and propose a new approach to model treatment differences between latent subgroups in a longitudinal setting. It has also been incorporated with the inverse probability weighted method to address data missingness. As the approach builds on the distribution-free functional response models, it requires no parametric distribution model and thereby provides a robust inference. We illustrate the approach with both real and simulated data.

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
María B. Aguirre ◽  
Octavio A. Bruzzone ◽  
Serguei V. Triapitsyn ◽  
Hilda Diaz-Soltero ◽  
Stephen D. Hight ◽  
...  

AbstractWhen two or more parasitoid species, particularly candidates for biocontrol, share the same target in the same temporal window, a complex of behaviors can occur among them. We studied the type of interactions (competition and intraguild predation) that existed between the nymphal parasitoids Anagyrus cachamai and A. lapachosus (Hymenoptera: Encyrtidae), two candidate neoclassical biocontrol agents against the Puerto Rican cactus pest mealybug, Hypogeococcus sp. (Hemiptera: Pseudococcidae). The surrogate native congener host in Argentina, the cactus mealybug Hypogeococcus sp., was studied to predict which species should be released; in the case that both should be released, in which order, and their potential impact on host suppression. In the laboratory we conducted experiments where different densities of the host mealybug were exposed to naive females of A. cachamai and A. lapachosus sequentially in both directions. Experiments were analyzed by combining a series of competitive behavioral and functional response models. A fully Bayesian approach was used to select the best explaining models and calculate their parameters. Intraguild predation existed between A. cachamai, the species that had the greatest ability to exploit the resource, and A. lapachosus, the strongest species in the interference competition. The role that intraguild predation played in suppression of Hypogeococcus sp. indicated that a multiple release strategy for the two biocontrol agents would produce better control than a single release; as for the release order, A. lapachosus should be released first.


2021 ◽  
Author(s):  
Conrad J. Harrison ◽  
Bao Sheng Loe ◽  
Inge Apon ◽  
Chris J. Sidey-Gibbons ◽  
Marc C. Swan ◽  
...  

BACKGROUND There are two philosophical approaches to contemporary psychometrics: Rasch measurement theory (RMT) and item response theory (IRT). Either measurement strategy can be applied to computerized adaptive testing (CAT). There are potential benefits of IRT over RMT with regards to measurement precision, but also potential risks to measurement generalizability. RMT CAT assessments have demonstrated good performance with the CLEFT-Q, a patient-reported outcome measure for use in orofacial clefting. OBJECTIVE To test whether the post-hoc application of IRT (graded response models, GRMs, and multidimensional GRMs) to RMT-validated CLEFT-Q appearance scales could improve CAT accuracy at given assessment lengths. METHODS Partial credit Rasch models, unidimensional GRMs and a multidimensional GRM were calibrated for each of the 7 CLEFT-Q appearance scales (which measure the appearance of the: face, jaw, teeth, nose, nostrils, cleft lip scar and lips) using data from the CLEFT-Q field test. A second, simulated dataset was generated with 1000 plausible response sets to each scale. Rasch and GRM scores were calculated for each simulated response set, scaled to 0-100 scores, and compared by Pearson’s correlation coefficient, root mean square error (RMSE), mean absolute error (MAE) and 95% limits of agreement. For the face, teeth and jaw scales, we repeated this in a an independent, real patient dataset. We then used the simulated data to compare the performance of a range of fixed-length CAT assessments that were generated with partial credit Rasch models, unidimensional GRMs and the multidimensional GRM. Median standard error of measurement (SEM) was recorded for each assessment. CAT scores were scaled to 0-100 and compared to linear assessment Rasch scores with RMSE, MAE and 95% limits of agreement. This was repeated in the independent, real patient dataset with the RMT and unidimensional GRM CAT assessments for the face, teeth and jaw scales to test the generalizability of our simulated data analysis. RESULTS Linear assessment scores generated by Rasch models and unidimensional GRMs showed close agreement, with RMSE ranging from 2.2 to 6.1, and MAE ranging from 1.5 to 4.9 in the simulated dataset. These findings were closely reproduced in the real patient dataset. Unidimensional GRM CAT algorithms achieved lower median SEM than Rasch counterparts, but reproduced linear assessment scores with very similar accuracy (RMSE, MAE and 95% limits of agreement). The multidimensional GRM had poorer accuracy than the unidimensional models at comparable assessment lengths. CONCLUSIONS Partial credit Rasch models and GRMs produce very similar CAT scores. GRM CAT assessments achieve a lower SEM, but this does not translate into better accuracy. Commonly used SEM heuristics for target measurement reliability should not be generalized across CAT assessments built with different psychometric models. In this study, a relatively parsimonious multidimensional GRM CAT algorithm performed more poorly than unidimensional GRM comparators.


2015 ◽  
Vol 282 (1801) ◽  
pp. 20142121 ◽  
Author(s):  
Henrik Sjödin ◽  
Åke Brännström ◽  
Göran Englund

We derive functional responses under the assumption that predators and prey are engaged in a space race in which prey avoid patches with many predators and predators avoid patches with few or no prey. The resulting functional response models have a simple structure and include functions describing how the emigration of prey and predators depend on interspecific densities. As such, they provide a link between dispersal behaviours and community dynamics. The derived functional response is general but is here modelled in accordance with empirically documented emigration responses. We find that the prey emigration response to predators has stabilizing effects similar to that of the DeAngelis–Beddington functional response, and that the predator emigration response to prey has destabilizing effects similar to that of the Holling type II response. A stability criterion describing the net effect of the two emigration responses on a Lotka–Volterra predator–prey system is presented. The winner of the space race (i.e. whether predators or prey are favoured) is determined by the relationship between the slopes of the species' emigration responses. It is predicted that predators win the space race in poor habitats, where predator and prey densities are low, and that prey are more successful in richer habitats.


2021 ◽  
Author(s):  
María B. Aguirre ◽  
Octavio A. Bruzzone ◽  
Serguei V. Triapitsyn ◽  
Hilda Diaz-Soltero ◽  
Stephen D. Hight ◽  
...  

Abstract When two or more parasitoid species, particularly candidates for biocontrol, share the same target in the same temporal window, a complex of behaviors can occur among them. We studied the type of interactions (competition and intraguild predation) that existed between the nymphal parasitoids Anagyrus cachamai and A. lapachosus (Hymenoptera: Encyrtidae), two candidate neoclassical biocontrol agents against the Puerto Rican cactus pest mealybug, Hypogeococcus sp. (Hemiptera: Pseudococcidae). The surrogate native congener host in Argentina, the cactus mealybug Hypogeococcus sp., was studied to predict which species should be released; in the case that both should be released, in which order, and their potential impact on host suppression. In the laboratory we conducted experiments where different densities of the host mealybug were exposed to naive females of A. cachamai and A. lapachosus sequentially in both directions. Experiments were analyzed by combining a series of competitive behavioral and functional response models. A fully Bayesian approach was used to select the best explaining models and calculate their parameters. Intraguild predation existed between A. cachamai, the species that had the greatest ability to exploit the resource, and A. lapachosus, the strongest species in the interference competition. The role that intraguild predation played in suppression of Hypogeococcus sp. indicated that a multiple release strategy for the two biocontrol agents would produce better control than a single release; as for the release order, A. lapachosus should be released first.


2018 ◽  
Vol 9 (2) ◽  
pp. 67-72
Author(s):  
Rifki Muhendra

A simple method of wireless sensor network node distribution was developed to address data loss during transmission. A node consists of a microcontroller, radio frequency, and battery. The adjacent nodes are planted with programs that can build mesh networks. This network consists of multiple child networks and parent networks connected through a frequency router node. Communication between nodes in the network can take two ways. The average ping time measured for the node distribution model is small from 1 second and the bit error rate (BER) is 0%. Index Terms—Wireless sensor networks, mesh, frequency router node


2010 ◽  
Vol 365 (1550) ◽  
pp. 2279-2288 ◽  
Author(s):  
Evelyn Merrill ◽  
Håkan Sand ◽  
Barbara Zimmermann ◽  
Heather McPhee ◽  
Nathan Webb ◽  
...  

Quantifying kill rates and sources of variation in kill rates remains an important challenge in linking predators to their prey. We address current approaches to using global positioning system (GPS)-based movement data for quantifying key predation components of large carnivores. We review approaches to identify kill sites from GPS movement data as a means to estimate kill rates and address advantages of using GPS-based data over past approaches. Despite considerable progress, modelling the probability that a cluster of GPS points is a kill site is no substitute for field visits, but can guide our field efforts. Once kill sites are identified, time spent at a kill site (handling time) and time between kills (killing time) can be determined. We show how statistical models can be used to investigate the influence of factors such as animal characteristics (e.g. age, sex, group size) and landscape features on either handling time or killing efficiency. If we know the prey densities along paths to a kill, we can quantify the ‘attack success’ parameter in functional response models directly. Problems remain in incorporating the behavioural complexity derived from GPS movement paths into functional response models, particularly in multi-prey systems, but we believe that exploring the details of GPS movement data has put us on the right path.


2011 ◽  
Vol 177 (6) ◽  
pp. 752-766 ◽  
Author(s):  
Michael W. McCoy ◽  
Benjamin M. Bolker ◽  
Karen M. Warkentin ◽  
James R. Vonesh

2001 ◽  
Vol 26 (3) ◽  
pp. 283-306 ◽  
Author(s):  
Mark Wilson ◽  
Machteld Hoskens

In this article an item response model is introduced for repeated ratings of student work, which we have called the Rater Bundle Model (RBM). Development of this model was motivated by the observation that when repeated ratings occur, the assumption of conditional independence is violated, and hence current state-of-the-art item response models, such as the rater facets model, that ignore this violation, underestimate measurement error, and overestimate reliability. In the rater bundle model these dependencies are explicitly parameterized. The model is applied to both real and simulated data to illustrate the approach.


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