Expression of WT1, Survivin, and TERT genes in Acute Myeloid Leukemia: Important Clinical Prognostic Indicators Envisioning Triple Immunotherapeutic Targets.

Blood ◽  
2009 ◽  
Vol 114 (22) ◽  
pp. 2593-2593
Author(s):  
Heeje Kim ◽  
Hee-Baeg Choi ◽  
Tai-Hyang Lee ◽  
Hyun-Jung Sohn ◽  
Tai-Gyu Kim ◽  
...  

Abstract Abstract 2593 Poster Board II-569 Introduction: Patients with acute myeloid leukemia (AML) show overexpression of Wilms tumor 1 (WT1), Survivin, and telomerase reverse transcriptase (TERT) genes. High levels of expression of the WT1 gene or its mutant derivatives are correlated with the clinical outcome and, therefore, both WT1 and Survivin are valuable immunotherapeutic targets in AML and critical prognostic indicators for minimal residual disease (MRD). Quantitative assessment of these gene transcripts by real-time quantitative PCR (RQ-PCR) may be useful for predicting clinical outcome and prognosis in AML, and for detection of MRD. Patients and Methods: We determined the expression of these genes, together, in bone marrow (BM) and peripheral blood (PB) mononuclear cells in 179 patients with newly diagnosed AML and 15 healthy normal controls using RQ-PCR. The molecular profiles were then evaluated with the patients' clinical characteristics, including the known important prognostic indicators such as age, cytogenetics, receptor tyrosine kinase (RTK) mutations, aberrant expression of lymphoid markers, and serum ferritin levels at diagnosis, etc. Results: The median levels of WT1, Survivin, and TERT expression in healthy controls were 10.41 (range, 0.74 – 23.26), 4.56 (range, 0.2 – 44.6), and 0.22 (range, 0.01 – 4.59), respectively. Higher levels of WT1, Survivin, and TERT gene expression than the maximum copy numbers in healthy controls were found in 73.99%, 72.5%, and 57.8% of BM, and in 62.2%, 46.4%, and 41.1% of PB from the patients, respectively. Elevated levels of paired expression of WT1 and Survivin, WT1 and TERT, and Survivin and TERT were found in 80%, 77%, and 68% in BM and in 86%, 80%, and 84% in PB of patients, respectively. We found that 85% of BM and 90% of PB from the patients expressed at least one of these three genes at elevated levels. The Kaplan-Meier estimated 5-year overall survival (OS) and event-free survival rates in the whole population of patients were 36% (95% CI, 31% – 41%) and 37% (95% CI, 31% – 43%), respectively. Of the 157 treated patients, 84 (53.5%) were in continuous complete remission (CR) at a median follow-up of 16 months (range, 1–60), and 23 (14.6%) died with treatment-related mortality (TRM). We evaluated whether the presence or absence of any single or combination of three genes in the patients affected CR and survival rates. Among the three genes examined, the most influential factor for achieving CR was Survivin (P = 0.0026). Interestingly, the levels of serum ferritin (P = 0.0286) and WT1 (P = 0.0202) were significant factors for TRM. Both WT1 and Survivin levels were closely correlated with conventional cytogenetic abnormalities. Notably, serum ferritin levels were correlated with TERT expression. Finally, c-kit mutations tended to show an inverse correlation with WT1 expression, but there was no significant correlation between FLT3-ITD mutations and expression of any of the three genes examined in this study. Conclusions: We found significant correlations between WT1, Survivin, and TERT gene expression by RQ-PCR, and critical parameters during induction chemotherapy for AML. As our findings were based on a single disease entity, i.e., adult AML, they suggest that the expression of three genes may be critical for the immunobiology of AML to influence the clinical outcome. Thus, the results of this study suggest that we can develop a novel strategic immunotherapeutic tool, targeting three antigens together, to eradicate MRD by enhancing the graft-versus-leukemia effect following allogeneic hematopoietic stem cell transplantation in patients with relapse high-risk AML, in a manner tailored to individual patients. Disclosures: No relevant conflicts of interest to declare.

2010 ◽  
Vol 28 (4) ◽  
pp. 570-577 ◽  
Author(s):  
Annika Dufour ◽  
Friederike Schneider ◽  
Klaus H. Metzeler ◽  
Eva Hoster ◽  
Stephanie Schneider ◽  
...  

Purpose CEBPA mutations are found as either biallelic (biCEBPA) or monoallelic (moCEBPA). We set out to explore whether the kind of CEBPA mutation is of prognostic relevance in cytogenetically normal (CN) acute myeloid leukemia (AML). Patients and Methods Four hundred sixty-seven homogeneously treated patients with CN-AML were subdivided into moCEBPA, biCEBPA, and wild-type (wt) CEBPA patients. The subgroups were analyzed for clinical parameters and for additional mutations in the NPM1, FLT3, and MLL genes. Furthermore, we obtained gene expression profiles using oligonucleotide microarrays. Results Only patients with biCEBPA had an improved median overall survival when compared with patients with wtCEBPA (not reached v 20.4 months, respectively; P = .018), whereas patients with moCEBPA (20.9 months) and wtCEBPA had a similar outcome (P = .506). Multivariable analysis confirmed biCEBPA, but not moCEBPA, mutations as an independent favorable prognostic factor. Interestingly, biCEBPA mutations, compared with wtCEBPA, were never associated with mutated NPM1 (0% v 43%, respectively; P < .001) and rarely associated with FLT3 internal tandem duplication (ITD; 5% v 23%, respectively; P = .059), whereas patients with moCEBPA had a similar frequency of mutated NPM1 and a significantly higher association with FLT3-ITD compared with patients with wtCEBPA (44% v 23%, respectively; P = .037). Furthermore, patients with biCEBPA showed a homogeneous gene expression profile that was characterized by downregulation of HOX genes, whereas patients with moCEBPA showed greater heterogeneity in their gene expression profiles. Conclusion Biallelic disruption of the N and C terminus of CEBPA is required for the favorable clinical outcome of CEBPA-mutated patients and represents a distinct molecular subtype of CN-AML with a different frequency of associated gene mutations. These findings are of great significance for risk-adapted therapeutic strategies in AML.


2012 ◽  
Vol 30 (12) ◽  
pp. 1350-1357 ◽  
Author(s):  
Verena I. Gaidzik ◽  
Peter Paschka ◽  
Daniela Späth ◽  
Marianne Habdank ◽  
Claus-Henning Köhne ◽  
...  

Purpose The tet oncogene family member 2 (TET2) gene was recently identified to be mutated in myeloid disorders including acute myeloid leukemia (AML). To date, there is increasing evidence for a functional role of TET2 mutations (TET2mut) in AML. Thus, we explored the frequency, gene-expression pattern, and clinical impact of TET2mut in a large cohort of patients with AML in the context of other AML-associated aberrations. Patients and Methods Samples from 783 younger adult patients with AML were analyzed for the presence of TET2mut (coding exons 3 to 11), and results were correlated with data from molecular genetic analyses, gene-expression profiling, and clinical outcome. Results In total, 66 TET2mut were found in 60 patients (60 of 783 patients; 7.6%), including missense (n = 37), frameshift (n = 16), and nonsense (n = 13) mutations, which, with one exception, were all heterozygous. TET2mut were not correlated with distinct clinical features or genetic alterations, except for isocitrate dehydrogenase mutations (IDHmut) that were almost mutually exclusive with TET2mut (P < .001). TET2mut were characterized by only a weak gene-expression pattern, which, nevertheless, reflected TET2mut-associated biology. TET2mut did not impact the response to induction therapy and clinical outcome; the combination of patients who exhibited TET2mut and/or IDHmut revealed shorter overall survival (P = .03), although this association was not independent from known risk factors. Conclusion TET2mut were identified in 7.6% of younger adult patients with AML and did not impact the response to therapy and survival. Mutations were mutually exclusive with IDHmut, which supported recent data on a common mechanism of action that might obscure the impact of TET2mut if compared against all other patients with AML.


Blood ◽  
2009 ◽  
Vol 113 (13) ◽  
pp. 3088-3091 ◽  
Author(s):  
Bas J. Wouters ◽  
Bob Löwenberg ◽  
Claudia A. J. Erpelinck-Verschueren ◽  
Wim L. J. van Putten ◽  
Peter J. M. Valk ◽  
...  

Abstract Mutations in CCAAT/enhancer binding protein α (CEBPA) are seen in 5% to 14% of acute myeloid leukemia (AML) and have been associated with a favorable clinical outcome. Most AMLs with CEBPA mutations simultaneously carry 2 mutations (CEBPAdouble-mut), usually biallelic, whereas single heterozygous mutations (CEBPAsingle-mut) are less frequently seen. Using denaturing high-performance liquid chromatography and nucleotide sequencing, we identified among a cohort of 598 newly diagnosed AMLs a subset of 41 CEBPA mutant cases (28 CEBPAdouble-mut and 13 CEBPAsingle-mut cases). CEBPAdouble-mut associated with a unique gene expression profile as well as favorable overall and event-free survival, retained in multivariable analysis that included cytogenetic risk, FLT3-ITD and NPM1 mutation, white blood cell count, and age. In contrast, CEBPAsingle-mut AMLs did not express a discriminating signature and could not be distinguished from wild-type cases as regards clinical outcome. These results demonstrate significant underlying heterogeneity within CEBPA mutation-positive AML with prognostic relevance.


Blood ◽  
2013 ◽  
Vol 122 (21) ◽  
pp. 2619-2619 ◽  
Author(s):  
Marita Lagergren Lindberg ◽  
Petra Hååg ◽  
Ali Moshfegh ◽  
Lena Kanter ◽  
Magnus Bjorkholm ◽  
...  

Abstract In this study we aimed to identify biomarkers predictive of clinical response in acute myeloid leukemia (AML). For this purpose mRNA was isolated from diagnostic samples from 42 AML patients (“training cohort”) and subjected to Affymetrix® gene expression analysis. All patients entered complete remission (CR) after high-dose induction chemotherapy, reaching a median CR duration of 161 (range 12-3701) days. Samples from patients with “short CR duration” (<6 months, n=24) and “long CR duration” (>6 months n=18), respectively, were pooled and compared. Gene expression analyses revealed 383 genes to be up-regulated and 610 genes down-regulated more than two fold in samples from patients with short, as compared to those with long CR duration. Ten genes were found to be up-regulated >30 times, with the runt-related transcription factor 1; translocated to 1 (cyclin D-related) (RUNX1T1) gene showing the highest differential expression (116-fold), while annexin 1 (ANXA1) was the most down-regulated gene (58-fold). Significantly higher transcript levels of RUNX1T1 were confirmed in the poor outcome group when performing quantitative real time polymerase chain reaction (qRT-PCR) on individual samples (n=20, p<0.002). Subjecting our data to pathway analysis (Ingenuity®) comparing the same groups, we focused on RUNX1T1 and created a network of RUNX1T1 interacting molecules. Utilizing the IPA database to create a network over interacting molecules of RUNX1T1, we identified a majority of these to be transcriptional regulators and among them the transcription factor 3 (TCF3) to be up-regulated 5-fold in patients with short CR duration. Our training cohort data were validated in silico extracting information from an independent study by Metzeler et al, publicly available from Oncomine® (www.oncomine.org) and encompassing diagnostic samples from 162 AML patients. Among genes differentially and similarly regulated in poor responders in both the training and validation cohorts we observed TCF3, chemokine (C-X-C motif) ligand 3 (CXCL3), Zinc finger, MIZ-type containing 1 (ZMIZ1) (up-regulated) and Peroxiredoxin 2 (PRDX2) (down-regulated). Analyses of clinical outcome revealed that AML patients with a high ZMIZ1 expression had a significantly decreased overall survival (OS) as compared to that of patients with a low ZMIZ1 expression (p <0.03). ZMIZ1 has been reported to be involved in tumor growth in general and suggested to interact with activated NOTCH in inducing leukemia, but its more precise role in AML is still unclear. In conclusion, we report clear differences in gene expression in diagnostic samples from AML patients with subsequent poor vs. better long-term clinical outcome to therapy, thus to constitute possible novel predictive biomarkers for response. In our training set RUNX1T1 was the most differentially expressed gene, while ZMIZ1 was upregulated in both the training and validation sets and significantly associated with survival. Further, functional studies of differentially expressed genes in clinical subsets of AML patients appear warranted. Disclosures: No relevant conflicts of interest to declare.


Blood ◽  
2007 ◽  
Vol 110 (11) ◽  
pp. 4294-4294
Author(s):  
Lars P. Jordheim ◽  
Tu Nguyen ◽  
Xavier Thomas ◽  
Charles Dumontet ◽  
Sean V. Tavtigian

Abstract Cytotoxic nucleoside analogues are largely used in the treatment of hematological malignancies and solid tumors. Their mechanism of action, based on interference with the metabolism of physiological nucleosides, targets well known gene products involved in transmembrane transport and intracellular metabolism. Several studies have shown correlations between the expression level of some of these genes and the clinical response to nucleoside analogue-based treatments. We proposed to study the potential involvement of genomic sequence variation in inter-individual heterogeneity of the expression level of six genes playing a role in the metabolism and the mechanism of action of cytarabine, a nucleoside analogue used for the treatment of acute myeloid leukemia (AML). We also studied the role of selected SNPs in the clinical outcome of cytarabine-treated AML-patients. We genotyped exonic SNPs in the genes CDA, DCK, NT5C2, NT5C3, SLC29A1 and TP53 in leucoblasts from patients with AML at diagnosis (n=83), and used these as markers to study whether these genes are subject to differential allelic expression. Using only heterozygous samples and a method based on high resolution melting curve analysis, we observed differential allelic expression for CDA (17/26 assessed samples), DCK (3/8 assessed samples), NT5C2 (2/23 assessed samples), NT5C3 (11/27 assessed samples, 4 with monoallelic expression) and TP53 (3/19 assessed samples). In order to find candidate causal variants, we used bioinformatics tools to identify SNPs located in evolutionarily conserved transcription factor binding sites. Eleven SNPs in the 5′ region of CDA, NT5C2, NT5C3 and TP53 have been genotyped, but no variant has yet been confirmed as responsible for differential allelic expression in any gene. Preliminary statistical analysis of clinical data from 72 patients hinted at correlation between some of the genotyped SNPs and clinical outcome: i.e. increased time to relapse after complete response for CDA rs2072671 CC and AC carriers (n=28) as compared to AA homozygotes (n=11, p=0.048); shorter time to complete response for TT homozygotes (n=11) for NT5C3 rs3750117 than for CC and CT carriers (n=56, p=0.009); and shorter time to complete response for AA homozygotes (n=8) for NT5C3 rs7778958 than for GG and GA carriers (n=58, p=0.007). In addition, a correlation was found between rs10883841 in NT5C2 and the overall gene expression level determined by relative quantitative RT-PCR (CC: 50.5 ± 17.4, n=48 vs. CT: 17.3 ± 6.1, n=15; p=0.043). We have shown that several genes involved in the cellular response to the cytotoxic nucleoside analogue cytarabine present differential allelic expression in leucoblasts. This result indicates that genomic variants are at least partially responsible for the variation in gene expression levels observed between cytarabine-treated AML-patients. Further, we identified SNPs that can be used as markers for the clinical outcome of cytarabine treated AML patients. Ongoing research should identify the causal variants for the differential allelic expression and other SNPs that are possible predictive factors for the outcome of this treatment.


2020 ◽  
Vol 21 (1) ◽  
Author(s):  
Roxan E. Shafik ◽  
Azza M. Ibrahim ◽  
Fadwa Said ◽  
Naglaa M. Hassan ◽  
Hanan E. Shafik ◽  
...  

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