scholarly journals An integrated systems biology approach to the study of preterm birth using "-omic" technology - a guideline for research

2011 ◽  
Vol 11 (1) ◽  
Author(s):  
Sara Gracie ◽  
◽  
Craig Pennell ◽  
Gunvor Ekman-Ordeberg ◽  
Stephen Lye ◽  
...  
2019 ◽  
Vol 42 ◽  
Author(s):  
J. Alfredo Blakeley-Ruiz ◽  
Carlee S. McClintock ◽  
Ralph Lydic ◽  
Helen A. Baghdoyan ◽  
James J. Choo ◽  
...  

Abstract The Hooks et al. review of microbiota-gut-brain (MGB) literature provides a constructive criticism of the general approaches encompassing MGB research. This commentary extends their review by: (a) highlighting capabilities of advanced systems-biology “-omics” techniques for microbiome research and (b) recommending that combining these high-resolution techniques with intervention-based experimental design may be the path forward for future MGB research.


2010 ◽  
Vol 7 (3) ◽  
Author(s):  
Simon J Cockell ◽  
Jochen Weile ◽  
Phillip Lord ◽  
Claire Wipat ◽  
Dmytro Andriychenko ◽  
...  

SummaryDrug development is expensive and prone to failure. It is potentially much less risky and expensive to reuse a drug developed for one condition for treating a second disease, than it is to develop an entirely new compound. Systematic approaches to drug repositioning are needed to increase throughput and find candidates more reliably. Here we address this need with an integrated systems biology dataset, developed using the Ondex data integration platform, for the in silico discovery of new drug repositioning candidates. We demonstrate that the information in this dataset allows known repositioning examples to be discovered. We also propose a means of automating the search for new treatment indications of existing compounds.


2012 ◽  
Author(s):  
Hemanth Tummala ◽  
Hilal S. Khalil ◽  
Katarzyna Goszcz ◽  
Maria Grazia Tupone ◽  
Vili Stoyanova ◽  
...  

2019 ◽  
Vol 13 (3) ◽  
pp. 272
Author(s):  
Michael F. Keating ◽  
Tom Q. Vallim ◽  
Ben L. Parker ◽  
Marcus M. Seldin ◽  
Elizabeth J. Tarling ◽  
...  

Cell Reports ◽  
2017 ◽  
Vol 20 (7) ◽  
pp. 1623-1640 ◽  
Author(s):  
Logan A. Walsh ◽  
Mariano J. Alvarez ◽  
Erich Y. Sabio ◽  
Marsha Reyngold ◽  
Vladimir Makarov ◽  
...  

2019 ◽  
Vol 1 (1) ◽  
pp. 166-184 ◽  
Author(s):  
Svetlana Postnova

Sleep and circadian rhythms are regulated across multiple functional, spatial and temporal levels: from genes to networks of coupled neurons and glial cells, to large scale brain dynamics and behaviour. The dynamics at each of these levels are complex and the interaction between the levels is even more so, so research have mostly focused on interactions within the levels to understand the underlying mechanisms—the so-called reductionist approach. Mathematical models were developed to test theories of sleep regulation and guide new experiments at each of these levels and have become an integral part of the field. The advantage of modelling, however, is that it allows us to simulate and test the dynamics of complex biological systems and thus provides a tool to investigate the connections between the different levels and study the system as a whole. In this paper I review key models of sleep developed at different physiological levels and discuss the potential for an integrated systems biology approach for sleep regulation across these levels. I also highlight the necessity of building mechanistic connections between models of sleep and circadian rhythms across these levels.


2011 ◽  
Vol 40 (D1) ◽  
pp. D632-D640 ◽  
Author(s):  
L. Kelly ◽  
K. H. Huang ◽  
H. Ding ◽  
S. W. Chisholm

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