scholarly journals Novel dimeric β-helical model of an ice nucleation protein with bridged active sites

2011 ◽  
Vol 11 (1) ◽  
pp. 36 ◽  
Author(s):  
Christopher P Garnham ◽  
Robert L Campbell ◽  
Virginia K Walker ◽  
Peter L Davies
Keyword(s):  
Active Sites ◽  
Ice Nucleation ◽  
Ice Nucleation Protein

scholarly journals Efficiency of immersion mode ice nucleation on surrogates of mineral dust

2007 ◽  
Vol 7 (19) ◽  
pp. 5081-5091 ◽  
Author(s):  
C. Marcolli ◽  
S. Gedamke ◽  
T. Peter ◽  
B. Zobrist
Keyword(s):  
Contact Angle ◽  
Active Sites ◽  
Quantitative Agreement ◽  
Ice Nucleation ◽  
Nucleation Theory ◽  
Classical Nucleation Theory ◽  
Aqueous Suspensions ◽  
Freezing Temperatures ◽  
Good Agreement ◽  
Heterogeneous Ice Nucleation

Abstract. A differential scanning calorimeter (DSC) was used to explore heterogeneous ice nucleation of emulsified aqueous suspensions of two Arizona test dust (ATD) samples with particle diameters of nominally 0–3 and 0–7 μm, respectively. Aqueous suspensions with ATD concentrations of 0.01–20 wt% have been investigated. The DSC thermograms exhibit a homogeneous and a heterogeneous freezing peak whose intensity ratios vary with the ATD concentration in the aqueous suspensions. Homogeneous freezing temperatures are in good agreement with recent measurements by other techniques. Depending on ATD concentration, heterogeneous ice nucleation occurred at temperatures as high as 256 K or down to the onset of homogeneous ice nucleation (237 K). For ATD-induced ice formation Classical Nucleation Theory (CNT) offers a suitable framework to parameterize nucleation rates as a function of temperature, experimentally determined ATD size, and emulsion droplet volume distributions. The latter two quantities serve to estimate the total heterogeneous surface area present in a droplet, whereas the suitability of an individual heterogeneous site to trigger nucleation is described by the compatibility function (or contact angle) in CNT. The intensity ratio of homogeneous to heterogeneous freezing peaks is in good agreement with the assumption that the ATD particles are randomly distributed amongst the emulsion droplets. The observed dependence of the heterogeneous freezing temperatures on ATD concentrations cannot be described by assuming a constant contact angle for all ATD particles, but requires the ice nucleation efficiency of ATD particles to be (log)normally distributed amongst the particles. Best quantitative agreement is reached when explicitly assuming that high-compatibility sites are rare and that therefore larger particles have on average more and better active sites than smaller ones. This analysis suggests that a particle has to have a diameter of at least 0.1 μm to exhibit on average one active site.

scholarly journals Effects of atmospheric conditions on ice nucleation activity of <i>Pseudomonas</i>

2012 ◽  
Vol 12 (22) ◽  
pp. 10667-10677 ◽  
Author(s):  
E. Attard ◽  
H. Yang ◽  
A.-M. Delort ◽  
P. Amato ◽  
U. Pöschl ◽  
...  
Keyword(s):  
Environmental Factors ◽  
Pseudomonas Syringae ◽  
Ice Nucleation ◽  
Acidic Ph ◽  
Bacterial Cells ◽  
Atmospheric Conditions ◽  
Ice Nucleation Protein ◽  
Ice Melt ◽  
Nucleation Activity ◽  
Ice Nucleation Activity

Abstract. Although ice nuclei from bacterial origin are known to be efficient at the highest temperatures known for ice catalysts, quantitative data are still needed to assess their role in cloud processes. Here we studied the effects of three typical cloud conditions (i) acidic pH (ii) NO2 and O3 exposure and (iii) UV-A exposure on the ice nucleation activity (INA) of four Pseudomonas strains. Three of the Pseudomonas syringae strains were isolated from cloud water and the phyllosphere and Pseudomonas fluorescens strain CGina-01 was isolated from Antarctic glacier ice melt. Among the three conditions tested, acidic pH caused the most significant effects on INA likely due to denaturation of the ice nucleation protein complex. Exposure to NO2 and O3 gases had no significant or only weak effects on the INA of two P. syringae strains whereas the INA of P. fluorescens CGina-01 was significantly affected. The INA of the third P. syringae strain showed variable responses to NO2 and O3 exposure. These differences in the INA of different Pseudomonas suggest that the response to atmospheric conditions could be strain-specific. After UV-A exposure, a substantial loss of viability of all four strains was observed whereas their INA decreased only slightly. This corroborates the notion that under certain conditions dead bacterial cells can maintain their INA. Overall, the negative effects of the three environmental factors on INA were more significant at the warmer temperatures. Our results suggest that in clouds where temperatures are near 0 °C, the importance of bacterial ice nucleation in precipitation processes could be reduced by some environmental factors.

scholarly journals An instrument for quantifying heterogeneous ice nucleation in multiwell plates using infrared emissions to detect freezing

2018 ◽  
Vol 11 (10) ◽  
pp. 5629-5641 ◽  
Author(s):  
Alexander D. Harrison ◽  
Thomas F. Whale ◽  
Rupert Rutledge ◽  
Stephen Lamb ◽  
Mark D. Tarn ◽  
...  
Keyword(s):  
Active Sites ◽  
Freezing Temperature ◽  
Equilibrium Temperature ◽  
Ice Nucleation ◽  
Ir Camera ◽  
Low Concentrations ◽  
Immersion Freezing ◽  
Mixed Phase Clouds ◽  
The City ◽  
Good Agreement

Abstract. Low concentrations of ice-nucleating particles (INPs) are thought to be important for the properties of mixed-phase clouds, but their detection is challenging. Hence, there is a need for instruments where INP concentrations of less than 0.01 L−1 can be routinely and efficiently determined. The use of larger volumes of suspension in drop assays increases the sensitivity of an experiment to rarer INPs or rarer active sites due to the increase in aerosol or surface area of particulates per droplet. Here we describe and characterise the InfraRed-Nucleation by Immersed Particles Instrument (IR-NIPI), a new immersion freezing assay that makes use of IR emissions to determine the freezing temperature of individual 50 µL droplets each contained in a well of a 96-well plate. Using an IR camera allows the temperature of individual aliquots to be monitored. Freezing temperatures are determined by detecting the sharp rise in well temperature associated with the release of heat caused by freezing. In this paper we first present the calibration of the IR temperature measurement, which makes use of the fact that following ice nucleation aliquots of water warm to the ice–liquid equilibrium temperature (i.e. 0 ∘C when water activity is ∼1), which provides a point of calibration for each individual well in each experiment. We then tested the temperature calibration using ∼100 µm chips of K-feldspar, by immersing these chips in 1 µL droplets on an established cold stage (µL-NIPI) as well as in 50 µL droplets on IR-NIPI; the results were consistent with one another, indicating no bias in the reported freezing temperature. In addition we present measurements of the efficiency of the mineral dust NX-illite and a sample of atmospheric aerosol collected on a filter in the city of Leeds. NX-illite results are consistent with literature data, and the atmospheric INP concentrations were in good agreement with the results from the µL-NIPI instrument. This demonstrates the utility of this approach, which offers a relatively high throughput of sample analysis and access to low INP concentrations.

scholarly journals Identification and purification of a bacterial ice-nucleation protein.

1986 ◽  
Vol 83 (19) ◽  
pp. 7256-7260 ◽  
Author(s):  
P. K. Wolber ◽  
C. A. Deininger ◽  
M. W. Southworth ◽  
J. Vandekerckhove ◽  
M. van Montagu ◽  
...  
Keyword(s):  
Ice Nucleation ◽  
Ice Nucleation Protein

scholarly journals The Impact of (bio-)organic substances on the ice nucleation activity of the K-feldspar microcline in aqueous solutions

2021 ◽  
Author(s):  
Kristian Klumpp ◽  
Claudia Marcolli ◽  
Thomas Peter
Keyword(s):  
Amino Acids ◽  
Citric Acid ◽  
Carboxylic Acids ◽  
Water Activity ◽  
Active Sites ◽  
Ice Nucleation ◽  
Organic Substances ◽  
Nucleation Activity ◽  
Ice Nucleation Activity ◽  
The Impact

Abstract. Potassium-feldspars (K-feldspars), such as microcline, are considered key dust minerals inciting ice nucleation in mixed phase clouds. Besides the high ice nucleation activity of microcline, recent studies also revealed a high sensi-tivity of microcline towards interaction with solutes on its surface. Here, we investigate the effect of organic and bio-organic substances on the ice nucleation activity of microcline, with the aim to better understand the underlying sur-face interactions. We performed immersion freezing experiments with microcline in solutions of three carboxylic acids, five amino acids and two polyols to represent these compound classes. By means of a differential scanning calorimeter we investigated the freezing of emulsified droplets of microcline suspended in various solutions. Depend-ing on the type of solute, different effects were observed. In the case of carboxylic acids (acetic, oxalic and citric acid), the measured heterogeneous onset temperatures, Thet, showed no significant deviation from the behavior pre-dicted by the water activity criterion, Thet(aw) = Tmelt(aw+Δaw), which relates Thet with the melting point temperature Tmelt via a constant water activity offset Δaw. While this behavior could be interpreted as a lack of interaction of the solute molecules with the surface, the carboxylic acids caused the fraction of heterogeneously frozen water, Fhet(aw), to decrease by up to 40 % with increasing solute concentrations. In combination, unaltered Thet(aw) and reduced Fhet(aw) suggest that active sites were largely deactivated by the acid molecules, but amongst those remaining active are also the best sites with the highest Thet. A deviation from this behavior is citric acid, which showed not only a de-crease in Fhet, but also a decrease in Thet of up to 4 K for water activities below 0.99, pointing to a depletion of the best active sites by interactions with the citrate ions. When neutralized solutions of the acids were used instead, the de-crease in Fhet became even more pronounced. The slope of Thet(aw) was different for each of the neutralized acid solu-tions. In the case of amino acid solutions, we found a decrease in Thet (up to 10 K), significantly below the Δaw-criterion, as well as a reduction in Fhet (up to 60 %). Finally, in case of the investigated polyols, no significant devia-tion of Thet from the Δaw-criterion was observed, and no significant deviation of Fhet in comparison to a pure water suspension was found. Furthermore, we measured the effects of aging on the ice nucleation activity in experiments with microcline suspended in solutions for up to seven days, and tested the reversibility of the interaction with the solutes after aging for 10 days. For citric acid, an ongoing irreversible degradation of the ice nucleation activity was observed, whereas the amino acids showed completely reversible effects. In summary, our experiments demonstrate a remarkable sensitivity of microcline ice nucleation activity to surface interactions with various solutes, underscoring the importance of the history of such particles from source to frozen cloud droplet in the atmosphere.

Synthesis of the N-terminal of the Ice Nucleation Protein Gene of Pseudomonas syringae by Assembly PCR

2005 ◽  
Vol 4 (3) ◽  
pp. 187-193 ◽  
Author(s):  
Mohammed A.A. Sarhan . ◽  
Mustaffa Musa . ◽  
Norazmi Mohd Nor . ◽  
Zainul F. Zainuddin .
Keyword(s):  
Pseudomonas Syringae ◽  
Protein Gene ◽  
Ice Nucleation ◽  
Ice Nucleation Protein ◽  
Assembly Pcr

scholarly journals Heterogeneous ice nucleation on dust particles sourced from nine deserts worldwide – Part 2: Deposition nucleation and condensation freezing

2019 ◽  
Vol 19 (2) ◽  
pp. 1059-1076 ◽  
Author(s):  
Yvonne Boose ◽  
Philipp Baloh ◽  
Michael Plötze ◽  
Johannes Ofner ◽  
Hinrich Grothe ◽  
...  
Keyword(s):  
Active Sites ◽  
Mineral Dust ◽  
Atmospheric Transport ◽  
Chemical Imaging ◽  
Ice Nucleation ◽  
Dust Particles ◽  
Full Potential ◽  
Nucleation Behavior ◽  
Crystal Water ◽  
Desert Dust

Abstract. Mineral dust particles from deserts are amongst the most common ice nucleating particles in the atmosphere. The mineralogy of desert dust differs depending on the source region and can further fractionate during the dust emission processes. Mineralogy to a large extent explains the ice nucleation behavior of desert aerosol, but not entirely. Apart from pure mineral dust, desert aerosol particles often exhibit a coating or are mixed with small amounts of biological material. Aging on the ground or during atmospheric transport can deactivate nucleation sites, thus strong ice nucleating minerals may not exhibit their full potential. In the partner paper of this work, it was shown that mineralogy determines most but not all of the ice nucleation behavior in the immersion mode found for desert dust. In this study, the influence of semi-volatile organic compounds and the presence of crystal water on the ice nucleation behavior of desert aerosol is investigated. This work focuses on the deposition and condensation ice nucleation modes at temperatures between 238 and 242 K of 18 dust samples sourced from nine deserts worldwide. Chemical imaging of the particles' surface is used to determine the cause of the observed differences in ice nucleation. It is found that, while the ice nucleation ability of the majority of the dust samples is dominated by their quartz and feldspar content, in one carbonaceous sample it is mostly caused by organic matter, potentially cellulose and/or proteins. In contrast, the ice nucleation ability of an airborne Saharan sample is found to be diminished, likely by semi-volatile species covering ice nucleation active sites of the minerals. This study shows that in addition to mineralogy, other factors such as organics and crystal water content can alter the ice nucleation behavior of desert aerosol during atmospheric transport in various ways.

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