scholarly journals Minhee Analysis Package: an integrated software package for detection and management of spontaneous synaptic events

2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Yong Gyu Kim ◽  
Jae Jin Shin ◽  
Sang Jeong Kim
Keyword(s):  
Experimental Data ◽  
Software Package ◽  
Automatic Detection ◽  
Synaptic Strength ◽  
Detection Algorithm ◽  
Detection Methods ◽  
Link Type ◽  
Analysis Package ◽  
Integrated Software ◽  
Primary Index

AbstractTo understand the information encoded in a connection between the neurons, postsynaptic current (PSC) has been widely measured as a primary index of synaptic strength in the field of neurophysiology. Although several automatic detection methods for PSCs have been proposed to simplify a workflow in the analysis, repetitive steps such as quantification and management of PSC data should be still performed with much effort. Here, we present Minhee Analysis Package, an integrated standalone software package that is capable of detecting, sorting, and quantifying PSC data. First, we developed a stepwise exploratory algorithm to detect PSC and validated our detection algorithm using the simulated and experimental data. We also described all the features and examples of the package so that users can use and follow them properly. In conclusion, our software package is expected to improve the convenience and efficiency of neurophysiologists to analyze PSC data by simplifying the workflow from detection to quantification. Minhee Analysis Package is freely available to download from http://www.github.com/parkgilbong/Minhee_Analysis_Pack.

scholarly journals Minhee Analysis Package: An Integrated Software Package for Detection and Management of Spontaneous Synaptic Events

2021 ◽  
Author(s):  
Yong Gyu Kim ◽  
Jae Jin Shin ◽  
Sang Jeong Kim
Keyword(s):  
Experimental Data ◽  
Software Package ◽  
Automatic Detection ◽  
Synaptic Strength ◽  
Detection Algorithm ◽  
Detection Methods ◽  
Analysis Package ◽  
Integrated Software ◽  
Primary Index

To understand the information encoded in a connection between the neurons, postsynaptic current (PSC) has been widely measured as a primary index of synaptic strength in the field of neurophysiology. Although several automatic detection methods for PSCs have been proposed to simplify a workflow in the analysis, repetitive steps such as quantification and management of PSC data should be still performed with much effort. Here, we present Minhee Analysis Package, an integrated standalone software package that is capable of detecting, sorting, and quantifying PSC data. First, we developed a stepwise exploratory algorithm to detect PSC and validated our detection algorithm using the simulated and experimental data. We also described all the features and examples of the package so that users can use and follow them properly. In conclusion, our software package is expected to improve the convenience and efficiency of neurophysiologists to analyze PSC data by simplifying the workflow from detection to quantification. Minhee Analysis Package is freely available to download from http://www.github.com/parkgilbong/Minhee_Analysis_Pack.

scholarly journals A Method for Defect Detection of Yarn-Dyed Fabric Based on Frequency Domain Filtering and Similarity Measurement

2019 ◽  
Vol 19 (3) ◽  
pp. 257-262 ◽  
Author(s):  
Bo Zhang ◽  
Chunming Tang
Keyword(s):  
Frequency Domain ◽  
Defect Detection ◽  
Automatic Detection ◽  
Detection Algorithm ◽  
Detection Methods ◽  
Similarity Measurement ◽  
Measurement Technology ◽  
Fabric Defect ◽  
Dyed Fabric ◽  
Frequency Domain Filtering

Abstract The detection of defects in yarn-dyed fabric is one of the most difficult problems among the present fabric defect detection methods. The difficulty lies in how to properly separate patterns, textures, and defects in the yarn-dyed fabric. In this paper, a novel automatic detection algorithm is presented based on frequency domain filtering and similarity measurement. First, the separation of the pattern and yarn texture structure of the fabric is achieved by frequency domain filtering technology. Subsequently, segmentation of the periodic units of the pattern is achieved by using distance matching function to measure the fabric pattern. Finally, based on the similarity measurement technology, the pattern’s periodic unit is classified, and thus, automatic detection of the defects in the yarn-dyed fabric is accomplished.

scholarly journals User-Customizable Health Pattern Detector Framework: Twitter Analysis Example

2015 ◽  
Vol 7 (1) ◽  
Author(s):  
Lianna M. Hall ◽  
Kevin K. Nam ◽  
Jason Thornton ◽  
Marianne DeAngelus ◽  
Timothy J. Dasey
Keyword(s):  
User Interface ◽  
Automatic Detection ◽  
Detection Algorithm ◽  
General Purpose ◽  
Superior Performance ◽  
Detection Methods ◽  
Query Term ◽  
Twitter Analysis ◽  
Static Detection ◽  
Automatic Detection Algorithm

A general-purpose method for automatic detection algorithm reengineering based upon Twitter keyword queries using user relevance/irrelevance feedback has been demonstrated to have superior performance and versatility compared to more static detection methods. A demonstration of the capability with an initial user interface has been performed. An extension of the processing that includes initial query term expansion prior to application of the customized detection is being investigated.

scholarly journals Modelling community structure and temporal spreading on complex networks

2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Vesa Kuikka
Keyword(s):  
Community Structure ◽  
Complex Networks ◽  
Community Detection ◽  
Network Structure ◽  
Network Connectivity ◽  
Network Models ◽  
Building Blocks ◽  
Detection Algorithm ◽  
Research Area ◽  
Detection Methods

AbstractWe present methods for analysing hierarchical and overlapping community structure and spreading phenomena on complex networks. Different models can be developed for describing static connectivity or dynamical processes on a network topology. In this study, classical network connectivity and influence spreading models are used as examples for network models. Analysis of results is based on a probability matrix describing interactions between all pairs of nodes in the network. One popular research area has been detecting communities and their structure in complex networks. The community detection method of this study is based on optimising a quality function calculated from the probability matrix. The same method is proposed for detecting underlying groups of nodes that are building blocks of different sub-communities in the network structure. We present different quantitative measures for comparing and ranking solutions of the community detection algorithm. These measures describe properties of sub-communities: strength of a community, probability of formation and robustness of composition. The main contribution of this study is proposing a common methodology for analysing network structure and dynamics on complex networks. We illustrate the community detection methods with two small network topologies. In the case of network spreading models, time development of spreading in the network can be studied. Two different temporal spreading distributions demonstrate the methods with three real-world social networks of different sizes. The Poisson distribution describes a random response time and the e-mail forwarding distribution describes a process of receiving and forwarding messages.

scholarly journals A generalised approach for high-throughput instance segmentation of stomata in microscope images

Plant Methods ◽  
2021 ◽  
Vol 17 (1) ◽  
Author(s):  
Hiranya Jayakody ◽  
Paul Petrie ◽  
Hugo Jan de Boer ◽  
Mark Whitty
Keyword(s):  
High Throughput ◽  
Imaging Techniques ◽  
Detection Algorithm ◽  
Input Image ◽  
Detection Methods ◽  
Sample Collection ◽  
High Throughput Analysis ◽  
General Applicability ◽  
Additional Image ◽  
Bounding Boxes

Abstract Background Stomata analysis using microscope imagery provides important insight into plant physiology, health and the surrounding environmental conditions. Plant scientists are now able to conduct automated high-throughput analysis of stomata in microscope data, however, existing detection methods are sensitive to the appearance of stomata in the training images, thereby limiting general applicability. In addition, existing methods only generate bounding-boxes around detected stomata, which require users to implement additional image processing steps to study stomata morphology. In this paper, we develop a fully automated, robust stomata detection algorithm which can also identify individual stomata boundaries regardless of the plant species, sample collection method, imaging technique and magnification level. Results The proposed solution consists of three stages. First, the input image is pre-processed to remove any colour space biases occurring from different sample collection and imaging techniques. Then, a Mask R-CNN is applied to estimate individual stomata boundaries. The feature pyramid network embedded in the Mask R-CNN is utilised to identify stomata at different scales. Finally, a statistical filter is implemented at the Mask R-CNN output to reduce the number of false positive generated by the network. The algorithm was tested using 16 datasets from 12 sources, containing over 60,000 stomata. For the first time in this domain, the proposed solution was tested against 7 microscope datasets never seen by the algorithm to show the generalisability of the solution. Results indicated that the proposed approach can detect stomata with a precision, recall, and F-score of 95.10%, 83.34%, and 88.61%, respectively. A separate test conducted by comparing estimated stomata boundary values with manually measured data showed that the proposed method has an IoU score of 0.70; a 7% improvement over the bounding-box approach. Conclusions The proposed method shows robust performance across multiple microscope image datasets of different quality and scale. This generalised stomata detection algorithm allows plant scientists to conduct stomata analysis whilst eliminating the need to re-label and re-train for each new dataset. The open-source code shared with this project can be directly deployed in Google Colab or any other Tensorflow environment.

scholarly journals High-Speed Lightweight Ship Detection Algorithm Based on YOLO-V4 for Three-Channels RGB SAR Image

2021 ◽  
Vol 13 (10) ◽  
pp. 1909
Author(s):  
Jiahuan Jiang ◽  
Xiongjun Fu ◽  
Rui Qin ◽  
Xiaoyan Wang ◽  
Zhifeng Ma
Keyword(s):  
Deep Learning ◽  
Gpu Computing ◽  
Hot Spot ◽  
Detection Algorithm ◽  
Detection Methods ◽  
Detection Accuracy ◽  
Processing Unit ◽  
Sar Image ◽  
Marine Monitoring ◽  
Ship Detection

Synthetic Aperture Radar (SAR) has become one of the important technical means of marine monitoring in the field of remote sensing due to its all-day, all-weather advantage. National territorial waters to achieve ship monitoring is conducive to national maritime law enforcement, implementation of maritime traffic control, and maintenance of national maritime security, so ship detection has been a hot spot and focus of research. After the development from traditional detection methods to deep learning combined methods, most of the research always based on the evolving Graphics Processing Unit (GPU) computing power to propose more complex and computationally intensive strategies, while in the process of transplanting optical image detection ignored the low signal-to-noise ratio, low resolution, single-channel and other characteristics brought by the SAR image imaging principle. Constantly pursuing detection accuracy while ignoring the detection speed and the ultimate application of the algorithm, almost all algorithms rely on powerful clustered desktop GPUs, which cannot be implemented on the frontline of marine monitoring to cope with the changing realities. To address these issues, this paper proposes a multi-channel fusion SAR image processing method that makes full use of image information and the network’s ability to extract features; it is also based on the latest You Only Look Once version 4 (YOLO-V4) deep learning framework for modeling architecture and training models. The YOLO-V4-light network was tailored for real-time and implementation, significantly reducing the model size, detection time, number of computational parameters, and memory consumption, and refining the network for three-channel images to compensate for the loss of accuracy due to light-weighting. The test experiments were completed entirely on a portable computer and achieved an Average Precision (AP) of 90.37% on the SAR Ship Detection Dataset (SSDD), simplifying the model while ensuring a lead over most existing methods. The YOLO-V4-lightship detection algorithm proposed in this paper has great practical application in maritime safety monitoring and emergency rescue.

scholarly journals Low Complexity Lane Detection Methods for Light Photometry System

Electronics ◽  
2021 ◽  
Vol 10 (14) ◽  
pp. 1665
Author(s):  
Jakub Suder ◽  
Kacper Podbucki ◽  
Tomasz Marciniak ◽  
Adam Dąbrowski
Keyword(s):  
Edge Detection ◽  
Optimal Path ◽  
Color Space ◽  
Low Complexity ◽  
Detection Algorithm ◽  
Lane Detection ◽  
Detection Methods ◽  
Raspberry Pi ◽  
Line Detection ◽  
Hsv Color Space

The aim of the paper was to analyze effective solutions for accurate lane detection on the roads. We focused on effective detection of airport runways and taxiways in order to drive a light-measurement trailer correctly. Three techniques for video-based line extracting were used for specific detection of environment conditions: (i) line detection using edge detection, Scharr mask and Hough transform, (ii) finding the optimal path using the hyperbola fitting line detection algorithm based on edge detection and (iii) detection of horizontal markings using image segmentation in the HSV color space. The developed solutions were tuned and tested with the use of embedded devices such as Raspberry Pi 4B or NVIDIA Jetson Nano.

scholarly journals Automatic Handgun Detection with Deep Learning in Video Surveillance Images

2021 ◽  
Vol 11 (13) ◽  
pp. 6085
Author(s):  
Jesus Salido ◽  
Vanesa Lomas ◽  
Jesus Ruiz-Santaquiteria ◽  
Oscar Deniz
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Video Surveillance ◽  
Automatic Detection ◽  
Public Spaces ◽  
Detection Methods ◽  
Training Dataset ◽  
Average Precision ◽  
Terrorist Acts

There is a great need to implement preventive mechanisms against shootings and terrorist acts in public spaces with a large influx of people. While surveillance cameras have become common, the need for monitoring 24/7 and real-time response requires automatic detection methods. This paper presents a study based on three convolutional neural network (CNN) models applied to the automatic detection of handguns in video surveillance images. It aims to investigate the reduction of false positives by including pose information associated with the way the handguns are held in the images belonging to the training dataset. The results highlighted the best average precision (96.36%) and recall (97.23%) obtained by RetinaNet fine-tuned with the unfrozen ResNet-50 backbone and the best precision (96.23%) and F1 score values (93.36%) obtained by YOLOv3 when it was trained on the dataset including pose information. This last architecture was the only one that showed a consistent improvement—around 2%—when pose information was expressly considered during training.

Revisiting knowledge distillation for light-weight visual object detection

2021 ◽  
Vol 43 (13) ◽  
pp. 2888-2898
Author(s):  
Tianze Gao ◽  
Yunfeng Gao ◽  
Yu Li ◽  
Peiyuan Qin
Keyword(s):  
Object Detection ◽  
Essential Element ◽  
Detection Algorithm ◽  
Positive Sample ◽  
Detection Methods ◽  
Visual Object ◽  
Light Weight ◽  
Model Compression ◽  
Novel Approach ◽  
Knowledge Distillation

An essential element for intelligent perception in mechatronic and robotic systems (M&RS) is the visual object detection algorithm. With the ever-increasing advance of artificial neural networks (ANN), researchers have proposed numerous ANN-based visual object detection methods that have proven to be effective. However, networks with cumbersome structures do not befit the real-time scenarios in M&RS, necessitating the techniques of model compression. In the paper, a novel approach to training light-weight visual object detection networks is developed by revisiting knowledge distillation. Traditional knowledge distillation methods are oriented towards image classification is not compatible with object detection. Therefore, a variant of knowledge distillation is developed and adapted to a state-of-the-art keypoint-based visual detection method. Two strategies named as positive sample retaining and early distribution softening are employed to yield a natural adaption. The mutual consistency between teacher model and student model is further promoted through a hint-based distillation. By extensive controlled experiments, the proposed method is testified to be effective in enhancing the light-weight network’s performance by a large margin.

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