scholarly journals Aligning text mining and machine learning algorithms with best practices for study selection in systematic literature reviews

2020 ◽  
Vol 9 (1) ◽  
Author(s):  
E. Popoff ◽  
M. Besada ◽  
J. P. Jansen ◽  
S. Cope ◽  
S. Kanters
Keyword(s):  
Machine Learning ◽  
Text Mining ◽  
Sensitivity And Specificity ◽  
Full Text ◽  
Learning Algorithms ◽  
Machine Learning Algorithms ◽  
Training Data ◽  
Support Vector ◽  
Study Selection ◽  
Literature Reviews

Abstract Background Despite existing research on text mining and machine learning for title and abstract screening, the role of machine learning within systematic literature reviews (SLRs) for health technology assessment (HTA) remains unclear given lack of extensive testing and of guidance from HTA agencies. We sought to address two knowledge gaps: to extend ML algorithms to provide a reason for exclusion—to align with current practices—and to determine optimal parameter settings for feature-set generation and ML algorithms. Methods We used abstract and full-text selection data from five large SLRs (n = 3089 to 12,769 abstracts) across a variety of disease areas. Each SLR was split into training and test sets. We developed a multi-step algorithm to categorize each citation into the following categories: included; excluded for each PICOS criterion; or unclassified. We used a bag-of-words approach for feature-set generation and compared machine learning algorithms using support vector machines (SVMs), naïve Bayes (NB), and bagged classification and regression trees (CART) for classification. We also compared alternative training set strategies: using full data versus downsampling (i.e., reducing excludes to balance includes/excludes because machine learning algorithms perform better with balanced data), and using inclusion/exclusion decisions from abstract versus full-text screening. Performance comparisons were in terms of specificity, sensitivity, accuracy, and matching the reason for exclusion. Results The best-fitting model (optimized sensitivity and specificity) was based on the SVM algorithm using training data based on full-text decisions, downsampling, and excluding words occurring fewer than five times. The sensitivity and specificity of this model ranged from 94 to 100%, and 54 to 89%, respectively, across the five SLRs. On average, 75% of excluded citations were excluded with a reason and 83% of these citations matched the reviewers’ original reason for exclusion. Sensitivity significantly improved when both downsampling and abstract decisions were used. Conclusions ML algorithms can improve the efficiency of the SLR process and the proposed algorithms could reduce the workload of a second reviewer by identifying exclusions with a relevant PICOS reason, thus aligning with HTA guidance. Downsampling can be used to improve study selection, and improvements using full-text exclusions have implications for a learn-as-you-go approach.

scholarly journals Identification of Leukemia Subtypes from Microscopic Images Using Convolutional Neural Network

Diagnostics ◽  
2019 ◽  
Vol 9 (3) ◽  
pp. 104 ◽  
Author(s):  
Ahmed ◽  
Yigit ◽  
Isik ◽  
Alpkocak
Keyword(s):  
Machine Learning ◽  
Data Augmentation ◽  
Nearest Neighbor ◽  
Learning Algorithms ◽  
Machine Learning Algorithms ◽  
Training Data ◽  
Support Vector ◽  
K Nearest Neighbor ◽  
Data Set ◽  
Leukemia Data

Leukemia is a fatal cancer and has two main types: Acute and chronic. Each type has two more subtypes: Lymphoid and myeloid. Hence, in total, there are four subtypes of leukemia. This study proposes a new approach for diagnosis of all subtypes of leukemia from microscopic blood cell images using convolutional neural networks (CNN), which requires a large training data set. Therefore, we also investigated the effects of data augmentation for an increasing number of training samples synthetically. We used two publicly available leukemia data sources: ALL-IDB and ASH Image Bank. Next, we applied seven different image transformation techniques as data augmentation. We designed a CNN architecture capable of recognizing all subtypes of leukemia. Besides, we also explored other well-known machine learning algorithms such as naive Bayes, support vector machine, k-nearest neighbor, and decision tree. To evaluate our approach, we set up a set of experiments and used 5-fold cross-validation. The results we obtained from experiments showed that our CNN model performance has 88.25% and 81.74% accuracy, in leukemia versus healthy and multiclass classification of all subtypes, respectively. Finally, we also showed that the CNN model has a better performance than other wellknown machine learning algorithms.

Using Machine Learning Methods To Identify Coal Pay Zones from Drilling and Logging-While-Drilling (LWD) Data

SPE Journal ◽  
2020 ◽  
Vol 25 (03) ◽  
pp. 1241-1258 ◽  
Author(s):  
Ruizhi Zhong ◽  
Raymond L. Johnson ◽  
Zhongwei Chen
Keyword(s):  
Machine Learning ◽  
Learning Algorithms ◽  
Machine Learning Algorithms ◽  
Training Data ◽  
Support Vector ◽  
Learning Methods ◽  
Well Completion ◽  
Machine Learning Methods ◽  
Extreme Gradient Boosting ◽  
Logging While Drilling

Summary Accurate coal identification is critical in coal seam gas (CSG) (also known as coalbed methane or CBM) developments because it determines well completion design and directly affects gas production. Density logging using radioactive source tools is the primary tool for coal identification, adding well trips to condition the hole and additional well costs for logging runs. In this paper, machine learning methods are applied to identify coals from drilling and logging-while-drilling (LWD) data to reduce overall well costs. Machine learning algorithms include logistic regression (LR), support vector machine (SVM), artificial neural network (ANN), random forest (RF), and extreme gradient boosting (XGBoost). The precision, recall, and F1 score are used as evaluation metrics. Because coal identification is an imbalanced data problem, the performance on the minority class (i.e., coals) is limited. To enhance the performance on coal prediction, two data manipulation techniques [naive random oversampling (NROS) technique and synthetic minority oversampling technique (SMOTE)] are separately coupled with machine learning algorithms. Case studies are performed with data from six wells in the Surat Basin, Australia. For the first set of experiments (single-well experiments), both the training data and test data are in the same well. The machine learning methods can identify coal pay zones for sections with poor or missing logs. It is found that rate of penetration (ROP) is the most important feature. The second set of experiments (multiple-well experiments) uses the training data from multiple nearby wells, which can predict coal pay zones in a new well. The most important feature is gamma ray. After placing slotted casings, all wells have coal identification rates greater than 90%, and three wells have coal identification rates greater than 99%. This indicates that machine learning methods (either XGBoost or ANN/RF with NROS/SMOTE) can be an effective way to identify coal pay zones and reduce coring or logging costs in CSG developments.

scholarly journals USE OF MULTIVARIATE MACHINE LEARNING ANALYSIS TECHNIQUES FOR FLOOD RISK PREVENTION

2018 ◽  
Vol XLII-3/W4 ◽  
pp. 549-554
Author(s):  
D. Vito
Keyword(s):  
Machine Learning ◽  
Flood Risk ◽  
Multivariate Analyses ◽  
Regional Climate ◽  
Learning Algorithms ◽  
Warning System ◽  
Machine Learning Algorithms ◽  
Training Data ◽  
Support Vector ◽  
Multiple Variables

<p><strong>Abstract.</strong> Natural disasters such as flood are regarded to be caused by extreme weather conditions as well as changes in global and regional climate.<br> The prediction of flood incoming is a key factor to ensure civil protection in case of emergency and to provide effective early warning system. The risk of flood is affected by several factors such as land use, meteorological events, hydrology and the topology of the land.<br> Predict such a risk implies the use of data coming from different sources such satellite images, water basin levels, meteorological and GIS data, that nowadays are easily produced by the availability new satellite portals as SENTINEL and distributed sensor networks on the field.<br> In order to have a comprehensive and accurate prediction of flood risk is essential to perform a selective and multivariate analyses among the different types of inputs.<br> Multivariate Analysis refers to all statistical techniques that simultaneously analyse multiple variables.<br> Among multivariate analyses, Machine learning to provide increasing levels of accuracy precision and efficiency by discovering patterns in large and heterogeneous input datasets.<br> Basically, machine learning algorithms automatically acquire experience information from data.<br> This is done by the process of learning, by which the algorithm can generalize beyond the examples given by training data in input. Machine learning is interesting for predictions because it adapts the resolution strategies to the features of the data. This peculiarity can be used to predict extreme from high variable data, as in the case of floods.<br> This work propose strategies and case studies on the application on machine learning algorithms on floods events prediction.<br> Particullarly the study will focus on the application of Support Vector Machines and Artificial Neural Networks on a multivariate set of data related to river Seveso, in order to propose a more general framework from the case study.</p>

scholarly journals An intelligent irrigation system based on internet of things (IoT) to minimize water loss

2022 ◽  
Vol 25 (1) ◽  
pp. 504
Author(s):  
Samar Amassmir ◽  
Said Tkatek ◽  
Otman Abdoun ◽  
Jaafar Abouchabaka
Keyword(s):  
Machine Learning ◽  
Internet Of Things ◽  
Water Loss ◽  
Intelligent System ◽  
Irrigation System ◽  
Learning Algorithms ◽  
Machine Learning Algorithms ◽  
Training Data ◽  
Support Vector ◽  
Intelligent Irrigation

This paper proposes a comparison of three machine learning algorithms for a better intelligent irrigation system based on internet of things (IoT) for differents products. This work's major contribution is to specify the most accurate algorithm among the three machine learning algorithms (k-nearest neighbors (KNN), support vector machine (SVM), artificial neural network (ANN)). This is achieved by collecting irrigation data of a specific products and split it into training data and test data then compare the accuracy of the three algorithms. To evaluate the performance of our algorithm we built a system of IoT devices. The temperature and humidity sensors are installed in the field interact with the Arduino microcontroller. The Arduino is connected to Raspberry Pi3, which holds the machine learning algorithm. It turned out to be ANN algorithm is the most accurate for such system of irrigation. The ANN algorithm is the best choice for an intelligent system to minimize water loss for some products.

Optimization of Diabetes Training DATA using Machine Learning Algorithms

2018 ◽  
Vol 6 (2) ◽  
pp. 283-286
Author(s):  
M. Samba Siva Rao ◽  
◽  
M.Yaswanth . ◽  
K. Raghavendra Swamy ◽  
◽  
...  
Keyword(s):  
Machine Learning ◽  
Learning Algorithms ◽  
Machine Learning Algorithms ◽  
Training Data

scholarly journals Hierarchical Tactile Sensation Integration from Prosthetic Fingertips Enables Multi-Texture Surface Recognition

Sensors ◽  
2021 ◽  
Vol 21 (13) ◽  
pp. 4324
Author(s):  
Moaed A. Abd ◽  
Rudy Paul ◽  
Aparna Aravelli ◽  
Ou Bai ◽  
Leonel Lagos ◽  
...  
Keyword(s):  
Machine Learning ◽  
Learning Algorithms ◽  
Machine Learning Algorithms ◽  
Sliding Contact ◽  
Tactile Sensation ◽  
Support Vector ◽  
Textured Surfaces ◽  
K Nearest Neighbor ◽  
Tactile Sensors ◽  
Time Frequency

Multifunctional flexible tactile sensors could be useful to improve the control of prosthetic hands. To that end, highly stretchable liquid metal tactile sensors (LMS) were designed, manufactured via photolithography, and incorporated into the fingertips of a prosthetic hand. Three novel contributions were made with the LMS. First, individual fingertips were used to distinguish between different speeds of sliding contact with different surfaces. Second, differences in surface textures were reliably detected during sliding contact. Third, the capacity for hierarchical tactile sensor integration was demonstrated by using four LMS signals simultaneously to distinguish between ten complex multi-textured surfaces. Four different machine learning algorithms were compared for their successful classification capabilities: K-nearest neighbor (KNN), support vector machine (SVM), random forest (RF), and neural network (NN). The time-frequency features of the LMSs were extracted to train and test the machine learning algorithms. The NN generally performed the best at the speed and texture detection with a single finger and had a 99.2 ± 0.8% accuracy to distinguish between ten different multi-textured surfaces using four LMSs from four fingers simultaneously. The capability for hierarchical multi-finger tactile sensation integration could be useful to provide a higher level of intelligence for artificial hands.

scholarly journals Drill-Core Mineral Abundance Estimation Using Hyperspectral and High-Resolution Mineralogical Data

2020 ◽  
Vol 12 (7) ◽  
pp. 1218
Author(s):  
Laura Tuşa ◽  
Mahdi Khodadadzadeh ◽  
Cecilia Contreras ◽  
Kasra Rafiezadeh Shahi ◽  
Margret Fuchs ◽  
...  
Keyword(s):  
Machine Learning ◽  
High Resolution ◽  
Ore Deposits ◽  
Machine Learning Algorithms ◽  
Training Data ◽  
Support Vector ◽  
Drill Core ◽  
Data Types ◽  
Mineralogical Characterization ◽  
Core Samples

Due to the extensive drilling performed every year in exploration campaigns for the discovery and evaluation of ore deposits, drill-core mapping is becoming an essential step. While valuable mineralogical information is extracted during core logging by on-site geologists, the process is time consuming and dependent on the observer and individual background. Hyperspectral short-wave infrared (SWIR) data is used in the mining industry as a tool to complement traditional logging techniques and to provide a rapid and non-invasive analytical method for mineralogical characterization. Additionally, Scanning Electron Microscopy-based image analyses using a Mineral Liberation Analyser (SEM-MLA) provide exhaustive high-resolution mineralogical maps, but can only be performed on small areas of the drill-cores. We propose to use machine learning algorithms to combine the two data types and upscale the quantitative SEM-MLA mineralogical data to drill-core scale. This way, quasi-quantitative maps over entire drill-core samples are obtained. Our upscaling approach increases result transparency and reproducibility by employing physical-based data acquisition (hyperspectral imaging) combined with mathematical models (machine learning). The procedure is tested on 5 drill-core samples with varying training data using random forests, support vector machines and neural network regression models. The obtained mineral abundance maps are further used for the extraction of mineralogical parameters such as mineral association.

Machine Learning Models for Finger Bend Evaluation using Implemented Low cost Flex Sensor

2021 ◽  
Vol 9 (VI) ◽  
pp. 3605-3611
Author(s):  
Pratyush Kaware
Keyword(s):  
Machine Learning ◽  
Support Vector Machine ◽  
Low Cost ◽  
Learning Algorithms ◽  
Cost Effective ◽  
Machine Learning Algorithms ◽  
Support Vector ◽  
Learning Models ◽  
Machine Learning Models

In this paper a cost-effective sensor has been implemented to read finger bend signals, by attaching the sensor to a finger, so as to classify them based on the degree of bent as well as the joint about which the finger was being bent. This was done by testing with various machine learning algorithms to get the most accurate and consistent classifier. Finally, we found that Support Vector Machine was the best algorithm suited to classify our data, using we were able predict live state of a finger, i.e., the degree of bent and the joints involved. The live voltage values from the sensor were transmitted using a NodeMCU micro-controller which were converted to digital and uploaded on a database for analysis.

scholarly journals Heart disease prediction using machine learning techniques : a survey

2018 ◽  
Vol 7 (2.8) ◽  
pp. 684 ◽  
Author(s):  
V V. Ramalingam ◽  
Ayantan Dandapath ◽  
M Karthik Raja
Keyword(s):  
Machine Learning ◽  
Learning Algorithms ◽  
Machine Learning Algorithms ◽  
Machine Learning Techniques ◽  
Support Vector ◽  
Complex Data ◽  
Learning Techniques ◽  
Vector Machines ◽  
Supervised Learning Algorithms ◽  
Life Threatening

Heart related diseases or Cardiovascular Diseases (CVDs) are the main reason for a huge number of death in the world over the last few decades and has emerged as the most life-threatening disease, not only in India but in the whole world. So, there is a need of reliable, accurate and feasible system to diagnose such diseases in time for proper treatment. Machine Learning algorithms and techniques have been applied to various medical datasets to automate the analysis of large and complex data. Many researchers, in recent times, have been using several machine learning techniques to help the health care industry and the professionals in the diagnosis of heart related diseases. This paper presents a survey of various models based on such algorithms and techniques andanalyze their performance. Models based on supervised learning algorithms such as Support Vector Machines (SVM), K-Nearest Neighbour (KNN), NaïveBayes, Decision Trees (DT), Random Forest (RF) and ensemble models are found very popular among the researchers.

Sign in / Sign up

Export Citation Format

Share Document