scholarly journals Computer-assisted analysis of filopod formation and the role of myosin II heavy chain phosphorylation in Dictyostelium

2005 ◽  
Vol 118 (10) ◽  
pp. 2225-2237 ◽  
Author(s):  
P. J. Heid
Keyword(s):  
Heavy Chain ◽  
Myosin Ii ◽  
Computer Assisted ◽  
Assisted Analysis

scholarly journals Myosin II heavy chain null mutant of Dictyostelium exhibits defective intracellular particle movement.

1990 ◽  
Vol 111 (3) ◽  
pp. 1137-1148 ◽  
Author(s):  
D Wessels ◽  
D R Soll
Keyword(s):  
Particle Velocity ◽  
Heavy Chain ◽  
Peak Concentration ◽  
Myosin Ii ◽  
Computer Assisted ◽  
Average Particle ◽  
Cellular Motility ◽  
Null Mutant ◽  
Particle Movement ◽  
Dynamic Morphology

Both cellular motility and intracellular particle movement are compared between normal Dictyostelium amebae of strain AX4 and amebae of a myosin II heavy chain null mutant, HS2215, using the computer assisted "Dynamic Morphology System." In AX4 cells rapidly translocating in buffer, cytoplasmic expansion is apical and the majority of intracellular particles move anteriorly, towards the site of expansion. When these cells are pulsed with 10(-6) M cAMP, the peak concentration of the natural cAMP wave, cells stop translocating and average particle velocity decreases threefold within 2-4 s after cAMP addition. After 8 s, there is a partial rebound both in cytoplasmic expansion and particle velocity, but in both cases, original apical polarity is lost. In HS2215 cells in buffer, both cellular translocation and average particle velocity are already at the depressed levels observed in normal cells immediately after cAMP addition, and no anterior bias is observed in either the direction of cytoplasmic expansion or the direction of particle movement. The addition of cAMP to myosin-minus cells results in no additional effect. The results demonstrate that myosin II is necessary for (a) the rapid rate of intracellular particle movement, (b) the biased anterior directionality of particle movement, and (c) the rapid inhibition of particle movement by cAMP.

Plagiaatbestrijding en analyse van oude bijbelvertalingen. Computationele tekstvergelijking in onderwijs en onderzoek

2009 ◽  
Vol 63 (1) ◽  
pp. 22-36
Author(s):  
W.Th. (Wido) van Peursen
Keyword(s):  
Hebrew Bible ◽  
Textual Analysis ◽  
The Internet ◽  
Computer Assisted ◽  
Digital Text ◽  
Assisted Analysis

Antiplagiarism software involves the comparison of various texts and the measurement of percentages of agreement and disagreement in order to establish dependency relationships, that is, to find out whether one text (e.g. a student’s paper) is based on another text (e.g. another student’s paper or a text on the internet). In the computer-assisted analysis of the Hebrew Bible and its ancient versions, the computer is used in a similar way to measure distances between texts and to establish relationships of dependency. Comparing these two applications of digital text comparison is helpful to illuminate the role of the computer functions of calculation and sorting in textual analysis.

The role of cyclic GMP in regulating myosin during chemotaxis of Dictyostelium: evidence from a mutant lacking the normal cyclic GMP response to cyclic AMP

1993 ◽  
Vol 106 (2) ◽  
pp. 591-595 ◽  
Author(s):  
G. Liu ◽  
H. Kuwayama ◽  
S. Ishida ◽  
P.C. Newell
Keyword(s):  
Cyclic Amp ◽  
Heavy Chain ◽  
Cyclic Gmp ◽  
Parental Strain ◽  
Response Curve ◽  
Myosin Ii ◽  
Cellular Slime ◽  
Mutant Cells ◽  
Slight Displacement

Evidence has previously been reported that, during chemotaxis of the cellular slime mould Dictyostelium discoideum, cyclic GMP regulates the association of myosin II with the cytoskeleton and that this regulation is effected by inhibiting myosin II heavy chain phosphorylation (Liu and Newell, J. Cell Sci., 90, 123–129, 1988; 98, 483–490, 1991). Here we provide further evidence in support of this hypothesis using a mutant (KI-10) that is defective in chemotaxis and lacks the normal cyclic AMP-induced cyclic GMP response. We found that the cyclic AMP-induced cytoskeletal actin response was similar to that of the parental strain in this mutant (although showing a slight displacement in the dose-response curve) but the cytoskeletal myosin II heavy chain response was abolished. Moreover, the mutant showed no phosphorylation of myosin II heavy chain in response to cyclic AMP. Compared to the parental strain XP55, the mutant cells contained approximately 40% more protein and their doubling time was 30% longer. These differences could be due to differences in the efficiency of cell division, a process in which the proper regulation of myosin function is essential and in which cyclic GMP may therefore play a role.

Qualitative analysis

2021 ◽  
pp. 231-258
Author(s):  
Aaron Williamon ◽  
Jane Ginsborg ◽  
Rosie Perkins ◽  
George Waddell
Keyword(s):  
Qualitative Analysis ◽  
Lived Experience ◽  
Thematic Analysis ◽  
Interpretative Phenomenological Analysis ◽  
Phenomenological Analysis ◽  
Computer Assisted ◽  
Qualitative Synthesis ◽  
Music Research ◽  
Assisted Analysis

Chapter 9 of Performing Music Research introduces the characteristics of qualitative analysis, focusing on the interpretative role of the researcher. Given that large volumes of information are typically collected in qualitative enquiry, the chapter presents ways of organizing and storing data and discusses the strengths and limitations of computer-assisted analysis. It goes on to discuss three types of qualitative analysis: thematic analysis, suitable for identifying patterns of meaning across data collected from multiple participants; interpretative phenomenological analysis (IPA), suitable for understanding the lived experience of individual participants; and qualitative synthesis, suitable for developing a holistic account based on a synthesis of the data. Throughout, the chapter explains how to report qualitative results efficiently and effectively.

Computer-Assisted Analysis of Multi-Color Confocal Microscopic Datasets: Automated Light Microscopic Discrimination of Synaptic Relationships

1996 ◽  
Vol 54 ◽  
pp. 284-285
Author(s):  
M Wessendorf ◽  
A Beuning ◽  
D Cameron ◽  
J Williams ◽  
C Knox
Keyword(s):  
Nerve Fibers ◽  
Confocal Scanning Laser Microscopy ◽  
Computer Assisted ◽  
Nerve Terminals ◽  
Neuronal Somata ◽  
Scanning Laser Microscopy ◽  
Confocal Scanning ◽  
Entire Cell ◽  
Confocal Scanning Laser ◽  
Assisted Analysis

Multi-color confocal scanning-laser microscopy (CSLM) allows examination of the relationships between neuronal somata and the nerve fibers surrounding them at sub-micron resolution in x,y, and z. Given these properties, it should be possible to use multi-color CSLM to identify relationships that might be synapses and eliminate those that are clearly too distant to be synapses. In previous studies of this type, pairs of images (e.g., red and green images for tissue stained with rhodamine and fluorescein) have been merged and examined for nerve terminals that appose a stained cell (see, for instance, Mason et al.). The above method suffers from two disadvantages, though. First, although it is possible to recognize appositions in which the varicosity abuts the cell in the x or y axes, it is more difficult to recognize them if the apposition is oriented at all in the z-axis—e.g., if the varicosity lies above or below the neuron rather than next to it. Second, using this method to identify potential appositions over an entire cell is time-consuming and tedious.

Collection of Ego-Centered Network Data with Computer-Assisted Interviews

Methodology ◽  
2006 ◽  
Vol 2 (1) ◽  
pp. 7-15 ◽  
Author(s):  
Joachim Gerich ◽  
Roland Lehner
Keyword(s):  
Survey Methods ◽  
A Priori ◽  
Dynamic Structure ◽  
Computer Assisted ◽  
Network Data ◽  
Great Effort ◽  
Self Administration ◽  
Face To Face ◽  
Full Network

Although ego-centered network data provide information that is limited in various ways as compared with full network data, an ego-centered design can be used without the need for a priori and researcher-defined network borders. Moreover, ego-centered network data can be obtained with traditional survey methods. However, due to the dynamic structure of the questionnaires involved, a great effort is required on the part of either respondents (with self-administration) or interviewers (with face-to-face interviews). As an alternative, we will show the advantages of using CASI (computer-assisted self-administered interview) methods for the collection of ego-centered network data as applied in a study on the role of social networks in substance use among college students.

Magnesium Chloride is an Effective Therapeutic Agent for Prostate Cancer

2018 ◽  
Vol 8 (1) ◽  
pp. 62 ◽  
Author(s):  
Julianna Maria Santos ◽  
Fazle Hussain
Keyword(s):  
Prostate Cancer ◽  
Magnesium Chloride ◽  
Epithelial Mesenchymal Transition ◽  
Chromatin Condensation ◽  
Myosin Ii ◽  
In Vivo Studies ◽  
Migration Speed ◽  
Mesenchymal Transition

Background: Reduced levels of magnesium can cause several diseases and increase cancer risk. Motivated by magnesium chloride’s (MgCl2) non-toxicity, physiological importance, and beneficial clinical applications, we studied its action mechanism and possible mechanical, molecular, and physiological effects in prostate cancer with different metastatic potentials.Methods: We examined the effects of MgCl2, after 24 and 48 hours, on apoptosis, cell migration, expression of epithelial mesenchymal transition (EMT) markers, and V-H+-ATPase, myosin II (NMII) and the transcription factor NF Kappa B (NFkB) expressions.Results: MgCl2 induces apoptosis, and significantly decreases migration speed in cancer cells with different metastatic potentials.  MgCl2 reduces the expression of V-H+-ATPase and myosin II that facilitates invasion and metastasis, suppresses the expression of vimentin and increases expression of E-cadherin, suggesting a role of MgCl2 in reversing the EMT. MgCl2 also significantly increases the chromatin condensation and decreases NFkB expression.Conclusions: These results suggest a promising preventive and therapeutic role of MgCl2 for prostate cancer. Further studies should explore extending MgCl2 therapy to in vivo studies and other cancer types.Keywords: Magnesium chloride, prostate cancer, migration speed, V-H+-ATPase, and EMT.

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