scholarly journals Genetic evaluation of tidal swamp rice from South Kalimantan, Indonesia based on the agro-morphological markers

2020 ◽  
Vol 21 (10) ◽  
Author(s):  
Dindin Hidayatul Mursyidin ◽  
Izhar Khairullah
Keyword(s):  
Morphological Traits ◽  
Quantitative Traits ◽  
Oryza Sativa L ◽  
Rice Cultivar ◽  
Genetic Evaluation ◽  
Rice Breeding ◽  
Morphological Markers ◽  
Breeding Programs ◽  
Tidal Swamp ◽  
Basal Internode

Abstract. Mursyidin DH, Khairullah I. 2020. Genetic evaluation of tidal swamp rice from South Kalimantan, Indonesia based on the agro-morphological markers. Biodiversitas 21: 4795-4803. A total of 71 cultivars of the tidal swamp rice (Oryza sativa L.), originated mainly from South Kalimantan, Indonesia, were evaluated agro-morphologically by using 26 qualitative and 13 quantitative traits. Based on these traits, this germplasm is generally low in diversity. However, three agro-morphological traits, namely the tillering abilities, seedling height, and diameter of the basal internode, shows the relatively highest diversity, shown by the Lakatan Putih, Pandak Putih, and Bayar Papuyu, respectively. The UPGMA and PCA revealed that this germplasm divided into six main clusters, where the sixth cluster is the largest with a total membership of 60 cultivars. The cluster analysis also revealed that Lakatan Siam is far separate from other cultivars. Thus, this finding might be useful in the future rice breeding programs, particularly in developing new rice cultivar for the tidal swamp areas.

Identification of Highly Polymorphic Molecular Markers and Potential Genotypes for Harnessing Chickpea Breeding Strategies

2020 ◽  
Author(s):  
Rajendra Kumar ◽  
Ashwani Kumar ◽  
Ashwani Yadav ◽  
Renu Yadav ◽  
J. P. Misra ◽  
...  
Keyword(s):  
Morphological Traits ◽  
Andhra Pradesh ◽  
Quantitative Traits ◽  
Crop Improvement ◽  
Allelic Diversity ◽  
Allele Mining ◽  
Efficient Utilization ◽  
Breeding Programs ◽  
Polymorphic Microsatellite ◽  
Stms Markers

Background: STMS markers and morphological traits were used to investigate the genetic relationship and allelic diversity in chickpea. In this study, we focused on the selection and more efficient utilization of core germplasm in breeding programs for chickpea crop improvement using STMS and quantitative / morphological traits. Methods: Seeds of elite accessions of chickpea were obtained from ICRISAT, Patancheru, Andhra Pradesh, India. 50 STMS markers and 11 quantitative traits were used for exploring the genetic variability and relationship in 35 chickpea accessions. Result: A total of 97 alleles were produced out of the 32 polymorphic STMS loci with an average of 3.03 alleles per locus ranging between 2-6 alleles per primer. The PIC value ranged from 0.029 to 0.768 with an average of 0.502. PIC value showed a highly positive correlation (r = 0.718) with number of alleles at the STMS loci. In both molecular and morphological markers / traits-based clustering, out of 35 chickpea accessions only one accession ICC-13892 was isolated at the end of clustering. The results indicated that highly polymorphic microsatellite markers NCPGR 68, NCPGR 50, NCPGR 81, NCPGR 48 and NCPGR 77 along with the accessions ICC-13892 having distant associations with ICC-13816, ICC-15697, ICC-15610, ICC-15868, ICC-15888, ICC-15996 with novel findings should be useful resources for strategies of allele mining, association genetics, mapping and cloning of gene(s) and in applied breeding to broaden the genetic base of chickpea.

scholarly journals Phenotypic diversity of the tidal swamp rice (Oryza sativa L.) germplasm from South Kalimantan, Indonesia

2019 ◽  
Vol 13 ((03) 2019) ◽  
pp. 386-394
Author(s):  
Dindin H. Mursyidin ◽  
Purnomo ◽  
Issirep Sumardi ◽  
Budi S. Daryono
Keyword(s):  
Plant Height ◽  
Quantitative Traits ◽  
Phenotypic Diversity ◽  
Oryza Sativa L ◽  
Leaf Sheath ◽  
Phenotypic Traits ◽  
Rice Cultivars ◽  
Tidal Swamp ◽  
Wide Range ◽  
The Future

Tidal swamp rice is a valuable source for developing new rice cultivars in the future because they possess some important traits for, adapted to a wide range of abiotic and biotic stresses. In this study, twenty-seven cultivars of the tidal swamp rice, comprising 26 from the South Kalimantan and one of Sumatera Island, Indonesia (an outgroup), were characterized phenotypically. Following Biodiversity International procedure, 14 qualitative and 15 quantitative traits were observed. The results show that this germplasm has a unique diversity in phenotypic traits. The secondary branch of panicle was the highest diversity of qualitative traits with an index of 0.93. Similarly, the plant height was the highest for quantitative traits (0.70). The correlation analysis confirmed that plant height, strongly correlated to culm diameter, the number of tillers and grain ratio. The PCA indicated that several independent traits, such as coleoptile anthocyanin coloration, basal leaf sheath color, and grain length, have positively contributed to the diversity, accounting 62.99%. Based on PCA analysis, the tidal swamp rice were clustered into four groups. According to UPGMA, this germplasm separated into six main groups, where Sardani (an outgroup) was very closely related to Lakatan Pacar and most distantly to Siam Perak. This information would be useful for the future rice breeding program, particularly in developing new rice cultivars in the tidal swamp areas.

scholarly journals Effect of gamma-radiation and sodium azide on quantitative characters in rice (Oryza sativa L.)

1998 ◽  
Vol 21 (1) ◽  
pp. 81-85 ◽  
Author(s):  
Ricardo Montalván ◽  
Akihiko Ando
Keyword(s):  
Gamma Rays ◽  
Sodium Azide ◽  
Quantitative Traits ◽  
Oryza Sativa L ◽  
Rice Cultivar ◽  
Tiller Number ◽  
Combined Treatments ◽  
Quantitative Characters ◽  
Mean And Variance ◽  
The Mean

Seeds of rice cultivar IAC-1246 received single and combined treatments of 10 or 20 Krad gamma-rays and 0.5 mM sodium azide (SA). The experiments were carried out to assess the effect of treatments on the mean and variance in second generation plants of the following quantitative traits: number of days to flowering (NDF), culm length (CL) and tiller number (TN). In general, the mutagenic treatments increased variance, but did not change the mean for the characters NDF and CL in the M2 generation. There was no increase in the mean or variance of TN. The combined treatments of gamma-rays and SA resulted in larger variance in CL than for the treatments with gamma-rays alone, but not higher than obtained with SA alone. Combined treatments with gamma-rays and SA did not increase the variance of NDF and TN when compared with the corresponding single treatments.

Historical changes in population structure during rice breeding programs in the northern limits of rice cultivation

2014 ◽  
Vol 127 (4) ◽  
pp. 995-1004 ◽  
Author(s):  
Hiroshi Shinada ◽  
Toshio Yamamoto ◽  
Eiji Yamamoto ◽  
Kiyosumi Hori ◽  
Junichi Yonemaru ◽  
...  
Keyword(s):  
Population Structure ◽  
Rice Cultivation ◽  
Rice Breeding ◽  
Breeding Programs ◽  
Historical Changes

Assessment of genetic variability for quantitative characters in rice (Oryza sativa L.) under post flood situation in sali

2021 ◽  
Vol 58 (1) ◽  
pp. 43-48
Author(s):  
Dalibha Pathak ◽  
Umesh Ch. Kalita
Keyword(s):  
Grain Yield ◽  
Coefficient Of Variation ◽  
Quantitative Traits ◽  
Oryza Sativa L ◽  
Block Design ◽  
Genetic Advance ◽  
Spikelet Sterility ◽  
Rice Varieties ◽  
Randomized Block Design ◽  
Spikelets Per Panicle

Sixteen genotypes of rice (including one check) were evaluated on 18 quantitative traits during sali (August), 2018 in a randomized block design with three replications at Instruction cum Research Farm, Department of Plant Breeding and Genetics, Assam Agricultural University, Jorhat to study the nature and magnitude of variability, heritability and genetic advance under delayed sown condition. The analysis of variance for 18 quantitative traits revealed the presence of significant differences for grain yield and its component characters. The highest genotypic coefficient of variation (GCV) and phenotypic coefficient of variation (PCV) was observed for chaffs per panicle followed by grains per panicle, spikelet sterility (%), spikelets per panicle, grain yield (kg/ha). A high heritability coupled with high genetic advance was observed for plant height (cm), spikelets per panicle, spikelet sterility (%), chaffs per panicle, grains per panicle, grain yield (g/hill), grain yield (kg/ha), biological yield (kg/ha), straw weight (kg/ha) and harvest index (%) indicating that selection might be effective for improvement of these characters under delayed sown condition with low input. From the findings of this investigation, one genotype viz., Gandhari emerged as the outstanding genotype which yielded 4170 kg/ha and could be directly used for cultivation in delayed sown situation with low inputs. Some other promising genotypes that yielded higher than the check Manoharsali under delayed sown condition were JR 29, JR 16, Basundhara and JR 60 and could be utilized as potential parental material in the hybridization programmes designed to develop suitable rice varieties for delayed sown situation.

scholarly journals Distinctness of 110 rice (Oryza sativa L.) varieties of Bangladesh through morphological traits

2014 ◽  
Vol 12 (1) ◽  
pp. 29-36
Author(s):  
MS Rahman ◽  
MKH Sohag ◽  
L Rahman
Keyword(s):  
Morphological Traits ◽  
Leaf Blade ◽  
Oryza Sativa L ◽  
Flag Leaf ◽  
Leaf Sheath ◽  
Seed Colour ◽  
Rice Varieties ◽  
Nodal Root ◽  
Two Hybrid ◽  
Research Institute

A total of 110 rice varieties of which 108 local (From Bangladesh Rice Research Institute) and two hybrid varieties (From ACI Ltd. Bangladesh) were used to identify the morphological traits during July, 2008 to June, 2009. These varieties represented four types viz. T. Aman (n=92), B. Aman (n=15), Boro (n=2) and Jhum accession (n=1) as described by Bangladesh Rice Research Institute’s literature. Though all these materials were varied ecotypically but grown in one (T. Aman) season. Irrespective of groups of all, 90 varieties were appeared distinctly morphologically from others due to seed colour; stigma colour; anthocyanin colouration of leaf sheath, nodes and lemma:palea, presence of awn and nodal root. Among 90 distinct varieties 19 were distinctly different from others by four traits, nine by three traits, 24 by two traits and 38 varieties by only single trait. The rest 20 varieties were distinguished flag leaf: attitude of the leaf blade. This was done to assess the quality traits of distinctness as major concern and was noninfluenced by the environment. DOI: http://dx.doi.org/10.3329/jbau.v12i1.21236 J. Bangladesh Agril. Univ. 12(1): 29-36, June 2014

scholarly journals GENOTYPIC DIVERSITY IN 291 MAIZE LINES FROM CIMMYT AND PHENOTYPIC CHARACTERIZATION IN SOUTHERN CORDOBA, ARGENTINA

2019 ◽  
Vol 30 (1) ◽  
pp. 25-33
Author(s):  
E.A. Rossi ◽  
M. Ruiz ◽  
M. Di Renzo ◽  
N.C. Bonamico
Keyword(s):  
Population Structure ◽  
Morphological Traits ◽  
Phenotypic Diversity ◽  
Genotypic Diversity ◽  
Inbred Lines ◽  
Environmental Adaptation ◽  
Procrustes Analysis ◽  
Phenotypic Characterization ◽  
Breeding Programs ◽  
Maize Inbred Lines

CIMMYT maize inbred lines (CMLs) are freely distributed to breeding programs around the world. Better information on phenotypic and genotypic diversity may provide guidance to breeders on how to use more efficiently the CMLs in their breeding programs. In this study a group of 291 CIMMYT maize inbred lines, was phenotyped by nine agro-morphological traits in south Córdoba, Argentina and genotyped using 18,082 SNPs. Based on the geographic information and the environmental adaptation, 291 CMLs were classified into eight subgroups. Anthesis-silking interval (IAE) was the trait with higher phenotypic diversity. A 40% of maize inbred lines, with IAE less than five days, show a good adaptation to growing conditions in south Córdoba, Argentina. The low phenotypic variation explained by environmental adaptation subgroups indicates that population structure is only a minor factor contributing to phenotypic diversity in this panel. Principal component analysis (ACP) allowed us to obtain phenotypic and genotypic orderings. Generalized procrustes analysis (APG) indicated a 60% consensus between both data type from the total panel of maize lines. In each environmental adaptation subgroup, the APG consensus was higher. This result, which might indicate linkage disequilibrium between SNPs markers and the genes controlling these agro-morphological traits, is promising and could be used as an initial tool in the identification of Quantitative Trait Loci (QTL). Information on genetic diversity, population structure and phenotypic diversity in local environments will help maize breeders to better understand how to use the current CIMMYT maize inbred lines group. Key words: broad-sense heritability, multivariate analysis, SNPs, agro-morphological traits.

scholarly journals Effects of Mutagens on Morphological traits of Psoralea corylifolia-A Medicinally Important Plant

2020 ◽  
Vol 26 (2) ◽  
Author(s):  
Ajey Karan Chaudhari ◽  
Anand Prakash Singh ◽  
B R Chaudhary
Keyword(s):  
Plant Height ◽  
Seed Yield ◽  
Morphological Traits ◽  
Mutation Breeding ◽  
Yield Potential ◽  
Mutagenic Potential ◽  
Breeding Programs ◽  
Methane Sulphonate ◽  
Flowering Initiation ◽  
Yield Quality

Mutation breeding like in other plants can significantly strengthen medicinal plants breeding programs and help to produce novel varieties with higher yield potential and improved yield quality. The dry and healthy seeds of P. corylifolia IC 111228 were subjected to mutagenic treatments namely ethyl methane sulphonate (EMS) and sodium azide (SA). The treatment concentrations 15mM, 30mM, 45mM and 60mM of EMS and 1mM, 2mM, 3mM and 4mM of SA were chosen to evaluate the mutagenic potential in either case. The morphological traits were evaluated in M1 generation viz. plant height, days to flowering initiation, seed yield/plant and 100-seed weight. In EMS treatment 15 mM increased the plant height and seed yield, while in SA treatment 4 mM increased the seed yield/plant and 100-seed yield.

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