Identification of genetic risk factors for Alzheimer's disease in the Chinese population by whole-genome sequencing

Author(s):  
Xiaopu Zhou
2014 ◽  
Vol 86 (10) ◽  
pp. 1661-1668 ◽  
Author(s):  
Dustin Long ◽  
Oren K. Fix ◽  
Xutao Deng ◽  
Mark Seielstad ◽  
Adam S. Lauring ◽  
...  

2019 ◽  
Vol 138 (2) ◽  
pp. 141-150 ◽  
Author(s):  
Jonas Carlsson Almlöf ◽  
Sara Nystedt ◽  
Dag Leonard ◽  
Maija-Leena Eloranta ◽  
Giorgia Grosso ◽  
...  

Blood ◽  
2005 ◽  
Vol 106 (11) ◽  
pp. 4124-4124
Author(s):  
Ying Feng ◽  
X. Zhou ◽  
X. Xiong ◽  
Y. Xiong ◽  
Y. Wang ◽  
...  

Abstract Acquired and genetic risk factors are associated with the occurrence of venous thrombotic embolism (VTE). In the Western population, 30 to 50% of the patients suffering from VTE are due to a genetic tendency to thrombosis. However, some common thrombotic risk factors in thrombophilia such as the factor V Leiden and the G20210A mutation of prothrombin are very rare in China and other Asiatic countries. Recently, we prospectively investigated the incidence of VTE among 768 hospitalized patients who had at least one of acquired risk factors such as prolonged immobilization, surgery, fracture, pregnancy, post-partum, cancer, diabetes mellitus, and some autoimmune diseases. The clinical VTE diagnosis was confirmed with Doppler ultrasonography, CT or/and venography. 17 patients (2.2%) developed VTE with one being complicated with pulmonary thromboembolism during their hospitalization. 90% of these cases had proximal deep vein thrombosis. It is notable that a high incidence of VTE (13.04%) has been found in patients in the intensive care unit, associated with many medical conditions including severe diseases, long lying in bed, multi-organ failure, infection and hypercoagulability. All these 17 VTE patients were extensively studied to identify and characterize the genetic anomalies predisposing possibly to thrombosis. Two were found to be of inherited antithrombin deficiency, and one of inherited protein C deficiency. Each of the three patients had the characteristics of recurrent VTE and/or familial history of VTE with episodes recognized at least in 2 family members. Our results suggest there might be a great variation according to the geographic origin of the population. The acquired risk factors play a much more important role than genetic risk factors in occurrence of VTE in Chinese population in comparison with Caucasians.


2020 ◽  
Author(s):  
Peng Zhang ◽  
Huaxia Luo ◽  
Yanyan Li ◽  
You Wang ◽  
Jiajia Wang ◽  
...  

AbstractThe lack of Chinese population specific haplotype reference panel and whole genome sequencing resources has greatly hindered the genetics studies in the world’s largest population. Here we presented the NyuWa genome resource of 71.1M SNPs and 8.2M indels based on deep (26.2X) sequencing of 2,999 Chinese individuals, and constructed NyuWa reference panel of 5,804 haplotypes and 19.3M variants, which is the first publicly available Chinese population specific reference panel with thousands of samples. There were 25.0M novel variants in NyuWa genome resource, and 3.2M specific variants in NyuWa reference panel. Compared with other panels, NyuWa reference panel reduces the Han Chinese imputation error rate by the range of 30% to 51%. Population structure and imputation simulation tests supported the applicability of one integrated reference panel for both northern and southern Chinese. In addition, a total of 22,504 loss-of-function variants in coding and noncoding genes were identified, including 11,493 novel variants. These results highlight the value of NyuWa genome resource to facilitate genetics research in Chinese and Asian populations.


2017 ◽  
Vol 4 (suppl_1) ◽  
pp. S43-S44
Author(s):  
Estee Torok ◽  
Hayley Brodrick ◽  
Fahad Khokhar ◽  
Beth Blane ◽  
Petra Polgarova ◽  
...  

Abstract Background The increasing incidence of carbapenemase-producing Enterobacteriaceae (CPE) is a global health concern, as treatment options are extremely limited. The prevalence of CPE in UK hospitals is unknown, as national screening guidelines only recommend screening in patients considered to be at high-risk of CPE. Patients in intensive care units (ICU) are at high-risk of healthcare-associated infections caused by multidrug-resistant organisms (MDRO). Methods We conducted a six-month prospective surveillance study to determine the prevalence of MDRO in a UK teaching hospital ICU. Between June and December 2016, all adult patients admitted to ICU were screened for MDRO on admission, on discharge, and weekly during their ICU stay. Surveillance samples included stool or rectal swabs, urine, sputum or tracheal aspirates, and wound swabs (if wounds were present). Isolates were characterized phenotypically before undergoing whole-genome sequencing (WGS), epidemiological, and phylogenetic analyses. Results During the first week of the study we identified stool carriage of a multidrug-resistant Klebsiella pneumoniae strain in two patients neither of whom had recognized risk factors for CPE. Both isolates were resistant to all antibiotics tested, apart from colistin, and were PCR-positive for the blaNDM-1 gene. Enhanced surveillance by the infection control team identified four additional patients in several wards who had stool carriage (n = 3) or bloodstream infection (n = 1) with a blaNDM-1K. pneumoniae isolate. Epidemiological links were identified between these six patients. Five months later, a second outbreak of multidrug-resistant K. pneumoniae was detected, involving stool carriage by four patients on two different wards. Environmental screening identified environmental contamination with multidrug-resistant K. pneumoniae on one ward. DNA sequence analysis confirmed that a novel blaNDM-1K. pneumoniaelineage (ST78) was responsible for both outbreaks in the hospital. Conclusion We identified two unsuspected blaNDM-1K. pneumoniae outbreaks in patients with no recognized risk factors for CPE. This highlights the importance of prospective surveillance for MDRO in high-risk settings, such as ICUs, and supports the use of rapid WGS to support outbreak investigations in real-time. Disclosures All authors: No reported disclosures.


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