scholarly journals Metagenomic insights into plant growth promoting genes inherent in bacterial endophytes of Emilia sonchifolia (Linn.) DC

2021 ◽  
Vol 8 (sp1) ◽  
pp. 6-16
Author(s):  
Sithara K Urumbil ◽  
M Anilkumar
Keyword(s):  
Plant Growth ◽  
Plant Growth Promotion ◽  
Host Plants ◽  
Growth Promotion ◽  
Acc Deaminase ◽  
Metabolic Potential ◽  
Illumina Hiseq ◽  
Characteristic Functional ◽  
Plant Growth Hormones ◽  
Metagenome Analysis

Studies on the genome of endophytes reveal the metabolic potential of endophytic microbiome including both culturable and unculturable fractions. The metagenome analysis through the Illumina HiSeq platform gives access to the genetic data encrypted for the molecular machinery, which takes part in plant growth promotion activity of the endophyte in various aspects including production of plant growth hormones and enhancing nutrient availability for the host plant. The present work was undertaken to identify the genes involved in plant growth promotion activities from the endophytes of Emilia sonchifolia(Linn.) DC. through metagenome analysis. Metagenomic studies include the analysis of functional annotations which aid in the detection of biocatalysts taking part in the metabolic pathway of host plants. The annotations of expressed genes in different databases like NCBI Nr, KEGG, eggnog and CAZy resulted in enlisting the vast array of information on the genetic diversity of the endophytic microbiome. The metagenome analysis of endophytic bacteria from the medicinal plant E.sonchifolia unveiled characteristic functional genes involved in plant growth promotion such as nitrogen metabolism (nif) and siderophore production (enterobactin category), ipdC and tnaA (IAA producing), ACC deaminase coding genes (regulation of elevated ethylene levels in host tissues), Mo-Nitrogenase, nitrous-oxide reductase (nosZ), nitrate reductase (narG, napA), nitrite reductase (nirD) (nutrient assimilation and absorption) enterobactin siderophore synthetase components F and D and acid phosphatase genes. This clearly explains the effective plant-microbe relationship and the role of bacterial endophytic microbes in regulating the growth of host plants.

scholarly journals Quorum Sensing System Affects the Plant Growth Promotion Traits of Serratia fonticola GS2

2020 ◽  
Vol 11 ◽  
Author(s):  
Byung Kwon Jung ◽  
Jerald Conrad Ibal ◽  
Huy Quang Pham ◽  
Min-Chul Kim ◽  
Gun-Seok Park ◽  
...  
Keyword(s):  
Quorum Sensing ◽  
Plant Growth ◽  
Plant Growth Promotion ◽  
Biofilm Formation ◽  
Growth Promotion ◽  
Acc Deaminase ◽  
Deletion Mutants ◽  
Phenotypic Data ◽  
Collective Behaviors ◽  
Pgp Activities

Quorum sensing (QS) enables bacteria to organize gene expression programs, thereby coordinating collective behaviors. It involves the production, release, and population-wide detection of extracellular signaling molecules. The cellular processes regulated by QS in bacteria are diverse and may be used in mutualistic coordination or in response to changing environmental conditions. Here, we focused on the influence of the QS-dependent genes of our model bacterial strain Serratia fonticola GS2 on potential plant growth promoting (PGP) activities including indole-3-acetic acid (IAA) production, 1-aminocyclopropane-1-carboxylate (ACC) deaminase activity, and biofilm formation. Based on genomic and phenotypic experimental data we identified and investigated the function of QS genes in the genome of the model strain. Our gene deletion study confirmed the biological functionality of the QS auto-inducer (gloI) and receptor (gloR) on potential PGP activities of GS2. A transcriptomic approach was also undertaken to understand the role of QS genes in regulation of genes primarily involved in PGP activities (IAA, ACC deaminase activity, and biofilm formation). Both transcriptomic and phenotypic data revealed that the QS-deletion mutants had considerably less PGP activities, as compared to the wild type. In addition, in vivo plant experiments showed that plants treated with GS2 had significantly higher growth rates than plants treated with the QS-deletion mutants. Overall, our results showed how QS-dependent genes regulate the potential PGP activities of GS2. This information may be helpful in understanding the relationship between QS-dependent genes and the PGP activity of bacteria, which aid in the production of practical bio-fertilizers for plant growth promotion.

scholarly journals Exploitation of endophytic Pseudomonas sp. for plant growth promotion and colonization in rice

2017 ◽  
Vol 9 (3) ◽  
pp. 1310-1316
Author(s):  
Gurjot Kaur ◽  
Poonam Sharma ◽  
Deepika Chhabra ◽  
Kailash Chand ◽  
Gurjit Singh Mangat
Keyword(s):  
Plant Growth ◽  
Plant Growth Promotion ◽  
Growth Promotion ◽  
Acc Deaminase ◽  
Pseudomonas Sp ◽  
Bacterial Isolates ◽  
Pgp Traits ◽  
P Solubilization ◽  
Fluorescent Pigment

The present investigation was carried out to exploit bacterial endophytes associated with root and leaf tissue of rice plant for plant growth promotion (PGP) and colonization study in vitro. Total 10 endophytic bacterial isolates (Pseudomonas sp.) were evaluate for PGP traits like P solubilization, production of Indole acetic acid (IAA), siderophore, ACC deaminase, protease, cellulase, fluorescent pigment, urease and denitrification activity. Out of 10 endophytic bacteria 30 %, 60 %, 20 %, 70 %, 10 % and 10 % were positive for siderophore, protease, cellulase, fluorescent pigment, urease and denitrification respectively. Maximum IAA production was recorded with isolate LRBLE7 (18.8 μgml-1) followed by LRBRE4 (16.0 μgml-1) and maximum P-solubilization was recorded with isolate LRBRE4 (5.8 mg 100 ml-1) followed by LRBLE7 (4.4 mg 100 ml-1). ACC deaminase production was recorded with isolate LRBLE6 (O.D=0.352 nm) followed by LRBRE5 (O.D=0.324nm). Three potential isolates (LRBRE4, LRBRE6 and LRBLE7) were selected on the basis of multiple PGP traits and were subjected to colonization study of rice seedling in vitro. Potential bacterial isolates can be exploited for improving growth and productivity in rice under sustainable management system.

scholarly journals Exploring the Multi-trait Plant Growth Promotion Capability of Commercial Liquid Biofertilizers Isolates

2015 ◽  
Vol 9 (3) ◽  
pp. 24-37 ◽  
Author(s):  
Mohammed Faisal Ansari ◽  
Devayani R. Tipre ◽  
Shailesh R. Dave
Keyword(s):  
Plant Growth ◽  
Plant Growth Promotion ◽  
Phosphate Solubilization ◽  
Growth Promotion ◽  
Acc Deaminase ◽  
Multiple Traits ◽  
The Past ◽  
Plant Growth Promoting ◽  
Growth Promoting ◽  
Field Efficiency

Organic farming is gaining popularity where bio-inoculants could play a key role in promoting the growth of plants. The liquid biofertilizers concept is new to farmers and developed recently. Lots of liquid biofertilizers formulations and field efficiency were shown in the past by various researchers, but the plant growth promoting (PGP) efficiency of the liquid biofertilizers isolates were not reported till date. In the present work 6 different commercially available liquid biofertilizers were used to isolate the organism. These isolated cultures were used to study their PGP efficiency with respect to phosphate solubilization and production of EPS, IAA, siderophore, ammonia, chitinase, ACC-deaminase and HCN. The phosphate solubilization was shown up to 303 g/ml by APS isolate. EPS production was shown by using different C sources and production up to 24 g/l was shown by studied isolated. Most of the organisms studied were able to produce IAA and highest production was shown up to 20 g/ml. More than 65% studied isolates showed siderophore and ACC-deaminase production. The present study shows that the commercial liquid biofertilizer isolates possess multiple traits of plant growth promotion. DOI: http://dx.doi.org/10.3126/ijls.v9i3.12463   International Journal of Life Sciences 9 (3): 2015; 24-37

scholarly journals Comparative Study on Plant Growth Promotion by Endophytic Pseudomonas Spp. and Bacillus Spp. of Solanum Lycopersicum

2017 ◽  
Vol 4 (4) ◽  
pp. 464-469
Author(s):  
Sampada Mishra ◽  
Saroj Kumar Mahato ◽  
Sabin Basi ◽  
Shradha Basi-Chipalu
Keyword(s):  
Plant Growth ◽  
Solanum Lycopersicum ◽  
Plant Growth Promotion ◽  
Growth Promotion ◽  
Shoot Biomass ◽  
Shoot Height ◽  
Plant Growth Hormones ◽  
Pseudomonas Spp ◽  
Bacillus Spp ◽  
Phosphate Solubilizing

Minimization of deleterious effects of chemical fertilizers on health, ecosystem and economy can only be achieved by finding healthy, eco-friendly and cheap alternatives. Naturally selected symbiotic relationship between the endophytic bacteria and their host plants makes them an ideal candidate as biofertilizer. They can synthesize various plant growth hormones as well as assist their host in uptake of nutrients from soil.The study was designed to compare plant growth promotion of Solanum lycopersicum by Bacillus spp., Pseudomonas spp. and total endophytic community isolated from roots of S. lycopersicum, grown in the soil samples collected from various locations of Kathmandu valley of Nepal. Tomato seeds were inoculated with mixtures of eight endophytic strains of Bacillus spp. and Pseudomonas spp., and crude endophytes obtained from each location separately.Endophytic treatments, except Pseudomonas spp., inhibited seminal root growth during 12-days germination period. However, after plantation, root and shoot biomass was enhanced by the endophytes, with no significant differences among the bacterial treatments. The shoot height was also enhanced, among which Pseudomonas spp. had the strongest effect. In phosphate solubilization assay, out of seventy-two isolates each of Bacillus spp. and Pseudomonas spp. tested, twenty-four isolates of Pseudomonas spp. and sixteen isolates of Bacillus spp. could solubilize phosphate. Higher number of phosphate solubilizing isolates of Pseudomonas spp. might provide a possible explanation for the greater enhancement of shoot height by Pseudomonas spp. as compared to Bacillus spp.Int J Appl Sci Biotechnol, Vol 4(4): 464-469

Isolation, selection, and characterization of beneficial rhizobacteria from pea, lentil, and chickpea grown in western Canada

2008 ◽  
Vol 54 (4) ◽  
pp. 248-258 ◽  
Author(s):  
Russell K. Hynes ◽  
Grant C.Y. Leung ◽  
Danielle L.M. Hirkala ◽  
Louise M. Nelson
Keyword(s):  
Plant Growth ◽  
Plant Growth Promotion ◽  
Fungal Pathogens ◽  
Crop Production ◽  
Growth Promotion ◽  
Profile Analysis ◽  
Acc Deaminase ◽  
Plant Growth Promoting ◽  
Growth Promoting

The use of beneficial soil microorganisms as agricultural inputs for improved crop production requires selection of rhizosphere-competent microorganisms with plant growth-promoting attributes. A collection of 563 bacteria originating from the roots of pea, lentil, and chickpea grown in Saskatchewan was screened for several plant growth-promoting traits, for suppression of legume fungal pathogens, and for plant growth promotion. Siderophore production was detected in 427 isolates (76%), amino-cyclopropane-1-carboxylic acid (ACC) deaminase activity in 29 isolates (5%), and indole production in 38 isolates (7%). Twenty-six isolates (5%) suppressed the growth of Pythium sp. strain p88-p3, 40 isolates (7%) suppressed the growth of Fusarium avenaceum , and 53 isolates (9%) suppressed the growth of Rhizoctonia solani CKP7. Seventeen isolates (3%) promoted canola root elongation in a growth pouch assay, and of these, 4 isolates promoted the growth of lentil and one isolate promoted the growth of pea. Fatty acid profile analysis and 16S rRNA sequencing of smaller subsets of the isolates that were positive for the plant growth-promotion traits tested showed that 39%–42% were members of the Pseudomonadaceae and 36%–42% of the Enterobacteriaceae families. Several of these isolates may have potential for development as biofertilizers or biopesticides for western Canadian legume crops.

scholarly journals Epiphytic and endophytic bacteria that promote growth of ethnomedicinal plants in the subtropical forests of Meghalaya, India

2014 ◽  
Vol 62 (4) ◽  
pp. 1295 ◽  
Author(s):  
Fenella Mary War Nongkhla ◽  
S. R. Joshi
Keyword(s):  
Plant Growth ◽  
Plant Growth Promotion ◽  
Host Plants ◽  
Growth Promotion ◽  
Antagonistic Activity ◽  
Growth Promoters ◽  
Associated Bacteria ◽  
Subtropical Forests ◽  
Ethnomedicinal Plants ◽  
Sacred Forests

<p>The present study was aimed to investigate the endophytic and epiphytic bacteria associated with selected ethnomedicinal plants from the pristine subtropical forests of Meghalaya and analyse them for plant growth promotion and antagonistic ability. This study is an attempt to explore plant associated bacteria which are beneficial to host plants, and thus aid in the conservation of ethnomedicinal plants of the studied subtropical forests, which are dwindling due to exploitation. The plant growth promotion parameters like indole acetic acid (IAA) production, mineral phosphate solubilisation, acid phosphatase activity, presence of 1-aminocyclopropane-1-carboxylic acid deaminase (ACC) gene, nitrogen fixation, cellulose digestion, chitin and pectin were screened among the isolates. The study revealed significant differences in bacterial population not only between the epiphytic and endophytic microhabitats, but also amongst the host plants. Out of the 70 isolated plant associated bacteria, <em>Bacillus </em>sp<em>., Serratia </em>sp<em>., </em><em>Pseudomonas </em>sp<em>.</em><em>, Pantoea </em>sp., and <em>Lysinibacillus</em> sp. showed potent plant growth promotion properties<em>. Bacillus siamensis </em>C53 and <em>B. subtilis </em>cenB showed significant antagonistic activity against the tested pathogens. This study indicated the isolates inhabiting the plants prevalent in the subtropical sacred forests that could be explored for use as plant growth promoters while practising the cultivation and conservation of ethnomedicinal plants.</p>

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