scholarly journals Superoxide dismutase and ascorbate peroxidase genes in Antarctic endemic brown alga Ascoseira mirabilis (Ascoseirales, Phaeophyceae): data mining of a de novo transcriptome

2020 ◽  
Vol 63 (6) ◽  
pp. 541-549
Author(s):  
Chenlin Liu ◽  
Xiuliang Wang
Keyword(s):  
Green Algae ◽  
Ascorbate Peroxidase ◽  
Brown Algae ◽  
Brown Alga ◽  
De Novo ◽  
De Novo Transcriptome ◽  
Polar Environment ◽  
Evolutionary Changes ◽  
Ecological Success ◽  
The Antarctic

AbstractThe Antarctic endemic brown alga Ascoseira mirabilis is physically and physiologically well adapted to the extreme polar environment. To better understand the molecular strategies associated with stress adaptation, the transcriptome of A. mirabilis was sequenced, and its antioxidant enzyme genes were identified and compared with other algae. A total of 126,576 unigenes with a mean length of 734 bp and N50 of 1174 bp was assembled from the transcriptome data. Phylogenetic analysis revealed that dramatic evolutionary changes had occurred in the brown algal superoxide dismutases (SODs) and class I peroxidases that were not consistent with the phylogeny of the species. Fe/Mn SODs are more prevalent in brown algae than in red and green algae. Two additional Fe-SODs in A. mirabilis were phylogenetically closely related to those of green algae, but not to those in other brown algae. We also identified three A. mirabilis ascorbate peroxidase (APx) genes that had a different origin from other brown algal APxs. The SOD and APx genes specifically identified in A. mirabilis will be crucial for understanding the evolution of the algal antioxidant enzymes that contribute to ecological success under extreme environmental conditions in the Antarctic region.

scholarly journals Sterol composition of the Adriatic sea algae Ulva lactuca, Codium dichotomum, Cystoseira adriatica and Fucus virsoides

2005 ◽  
Vol 70 (12) ◽  
pp. 1395-1400 ◽  
Author(s):  
Radomir Kapetanovic ◽  
Dusan Sladic ◽  
Simeon Popov ◽  
Mario Zlatovic ◽  
Zoran Kljajic ◽  
...  
Keyword(s):  
Green Algae ◽  
Green Alga ◽  
Brown Algae ◽  
Brown Alga ◽  
Adriatic Sea ◽  
Sterol Composition ◽  
Ulva Lactuca ◽  
The South ◽  
Low Concentration

The sterol composition of two green algae and two brown algae from the South Adriatic was determined. In the green alga Ulva lactuca, the principal sterols were cholesterol and isofucosterol. In the brown alga Cystoseira adriatica, the main sterols were cholesterol and stigmast-5-en-3?-ol, while the characteristic sterol of the brown algae, fucosterol, was found only in low concentration. The sterol fractions of the green alga Codium dichotomum and the brown alga Fucus virsoides contained practically only one sterol each, comprising more than 90 % of the total sterols (clerosterol in the former and fucosterol in the latter).

Morphological reconstruction ofMiaohephyton bifurcatum, a possible brown alga from the Neoproterozoic Doushantuo Formation, South China

1998 ◽  
Vol 72 (6) ◽  
pp. 1072-1086 ◽  
Author(s):  
Shuhai Xiao ◽  
Andrew H. Knoll ◽  
Xunlai Yuan
Keyword(s):  
Green Algae ◽  
South China ◽  
Brown Algae ◽  
Brown Alga ◽  
Sensu Stricto ◽  
Sample Population ◽  
Secondary Endosymbiosis ◽  
Doushantuo Formation ◽  
Morphological Reconstruction ◽  
Meristematic Growth

On the basis of morphological and taphonomic study of a large sample population,Miaohephyton bifurcatumSteiner, emend. from the terminal Proterozoic Doushantuo Formation (600-550 Ma), South China, is interpreted as algal fragments shed from their parent thalli for reproductive or environmental reasons. Characters such as regularly dichotomous, multicellular thalli with forked tips, apical and intercalary meristematic growth, abscission structures, and possible conceptacles collectively suggest an affinity with the brown algae, in particular the order Fucales. In conjunction with reports of xanthophyte fossils in older Neoproterozoic rocks, this reinterpretation ofMiaohephyton bifurcatumindicates that photosynthetic stramenopiles (chrysophytes, synurophytes, xanthophytes, phaeophytes, and diatoms; or chromophytes sensu stricto) diversified during the Neoproterozoic Era along with the red and green algae. This, in turn, suggests that the secondary endosymbiosis that gave rise to the photosynthetic stramenopiles took place relatively soon after the evolutionary transformation of cyanobacteria to rhodophyte plastids.

scholarly journals KrillDB: A de novo transcriptome database for the Antarctic krill (Euphausia superba)

PLoS ONE ◽  
2017 ◽  
Vol 12 (2) ◽  
pp. e0171908 ◽  
Author(s):  
Gabriele Sales ◽  
Bruce E. Deagle ◽  
Enrica Calura ◽  
Paolo Martini ◽  
Alberto Biscontin ◽  
...  
Keyword(s):  
Antarctic Krill ◽  
De Novo ◽  
Euphausia Superba ◽  
De Novo Transcriptome ◽  
Transcriptome Database ◽  
The Antarctic ◽  
Antarctic Krill Euphausia Superba

scholarly journals RNA-Seq reveals divergent gene expression between larvae with contrasting trophic modes in the poecilogonous polychaete Boccardia wellingtonensis

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Álvaro Figueroa ◽  
Antonio Brante ◽  
Leyla Cárdenas
Keyword(s):  
De Novo ◽  
Juvenile Stage ◽  
Type I ◽  
Rna Seq ◽  
Mrna Synthesis ◽  
De Novo Transcriptome ◽  
Larval Stages ◽  
Divergent Gene ◽  
Genetic Mechanisms ◽  
Planktotrophic Larvae

AbstractThe polychaete Boccardia wellingtonensis is a poecilogonous species that produces different larval types. Females may lay Type I capsules, in which only planktotrophic larvae are present, or Type III capsules that contain planktotrophic and adelphophagic larvae as well as nurse eggs. While planktotrophic larvae do not feed during encapsulation, adelphophagic larvae develop by feeding on nurse eggs and on other larvae inside the capsules and hatch at the juvenile stage. Previous works have not found differences in the morphology between the two larval types; thus, the factors explaining contrasting feeding abilities in larvae of this species are still unknown. In this paper, we use a transcriptomic approach to study the cellular and genetic mechanisms underlying the different larval trophic modes of B. wellingtonensis. By using approximately 624 million high-quality reads, we assemble the de novo transcriptome with 133,314 contigs, coding 32,390 putative proteins. We identify 5221 genes that are up-regulated in larval stages compared to their expression in adult individuals. The genetic expression profile differed between larval trophic modes, with genes involved in lipid metabolism and chaetogenesis over expressed in planktotrophic larvae. In contrast, up-regulated genes in adelphophagic larvae were associated with DNA replication and mRNA synthesis.

scholarly journals The brain transcriptome of the wolf spider, Schizocosa ocreata

2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Daniel Stribling ◽  
Peter L. Chang ◽  
Justin E. Dalton ◽  
Christopher A. Conow ◽  
Malcolm Rosenthal ◽  
...  
Keyword(s):  
Gene Expression ◽  
De Novo ◽  
Transcriptome Assembly ◽  
Model Organisms ◽  
De Novo Transcriptome Assembly ◽  
De Novo Transcriptome ◽  
Wolf Spiders ◽  
Schizocosa Ocreata ◽  
Genomic Studies ◽  
The Brain

Abstract Objectives Arachnids have fascinating and unique biology, particularly for questions on sex differences and behavior, creating the potential for development of powerful emerging models in this group. Recent advances in genomic techniques have paved the way for a significant increase in the breadth of genomic studies in non-model organisms. One growing area of research is comparative transcriptomics. When phylogenetic relationships to model organisms are known, comparative genomic studies provide context for analysis of homologous genes and pathways. The goal of this study was to lay the groundwork for comparative transcriptomics of sex differences in the brain of wolf spiders, a non-model organism of the pyhlum Euarthropoda, by generating transcriptomes and analyzing gene expression. Data description To examine sex-differential gene expression, short read transcript sequencing and de novo transcriptome assembly were performed. Messenger RNA was isolated from brain tissue of male and female subadult and mature wolf spiders (Schizocosa ocreata). The raw data consist of sequences for the two different life stages in each sex. Computational analyses on these data include de novo transcriptome assembly and differential expression analyses. Sample-specific and combined transcriptomes, gene annotations, and differential expression results are described in this data note and are available from publicly-available databases.

scholarly journals Sub-Chronic Effects of Slight PAH- and PCB-Contaminated Mesocosms in Paracentrotus lividus Lmk: A Multi-Endpoint Approach and De Novo Transcriptomic

2021 ◽  
Vol 22 (13) ◽  
pp. 6674
Author(s):  
Luisa Albarano ◽  
Valerio Zupo ◽  
Davide Caramiello ◽  
Maria Toscanesi ◽  
Marco Trifuoggi ◽  
...  
Keyword(s):  
De Novo ◽  
Sea Urchins ◽  
Transcriptome Assembly ◽  
Paracentrotus Lividus ◽  
Marine Biota ◽  
De Novo Transcriptome Assembly ◽  
De Novo Transcriptome ◽  
Limit Values ◽  
The Impact ◽  
Endpoint Approach

Sediment pollution is a major issue in coastal areas, potentially endangering human health and the marine environments. We investigated the short-term sublethal effects of sediments contaminated with polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs) on the sea urchin Paracentrotus lividus for two months. Spiking occurred at concentrations below threshold limit values permitted by the law (TLVPAHs = 900 µg/L, TLVPCBs = 8 µg/L, Legislative Italian Decree 173/2016). A multi-endpoint approach was adopted, considering both adults (mortality, bioaccumulation and gonadal index) and embryos (embryotoxicity, genotoxicity and de novo transcriptome assembly). The slight concentrations of PAHs and PCBs added to the mesocosms were observed to readily compartmentalize in adults, resulting below the detection limits just one week after their addition. Reconstructed sediment and seawater, as negative controls, did not affect sea urchins. PAH- and PCB-spiked mesocosms were observed to impair P. lividus at various endpoints, including bioaccumulation and embryo development (mainly PAHs) and genotoxicity (PAHs and PCBs). In particular, genotoxicity tests revealed that PAHs and PCBs affected the development of P. lividus embryos deriving from exposed adults. Negative effects were also detected by generating a de novo transcriptome assembly and its annotation, as well as by real-time qPCR performed to identify genes differentially expressed in adults exposed to the two contaminants. The effects on sea urchins (both adults and embryos) at background concentrations of PAHs and PCBs below TLV suggest a need for further investigations on the impact of slight concentrations of such contaminants on marine biota.

Sign in / Sign up

Export Citation Format

Share Document