scholarly journals Genetic Analysis for Relationships between some Native Sour Cherry (Prunus cerasus l.) Using RAPD Markers

2019 ◽  
Vol 76 (1) ◽  
pp. 11
Author(s):  
Ioana Virginia BERINDEAN ◽  
Alexandra Maria ITU
Keyword(s):  
Genetic Analysis ◽  
Genetic Similarity ◽  
Rapd Markers ◽  
Cultivar Identification ◽  
Geographic Origin ◽  
Sour Cherry ◽  
Prunus Cerasus ◽  
Breeding Programs ◽  
Genetic Studies ◽  
Allotetraploid Species

Prunus cerasus L. are an allotetraploid species from temperate climatic zone. The aim of this study was to characterize some native sour cherry genotypes from different orchards from Romania, based on RAPD markers. We used 14 primers RAPD to analyze a total of 14 varieties of sour cherries. After analysis, a good level of polymorphism was generated about only six primers (OPA 04, OPB10, OPA17, OPA20, OPA03 and OPB17) the rest of primers were considered monomorphic. The dendrograme separated the cultivars according to their genetic and geographic origin. The genetic similarity among the cultivars showed a good diversity between the genotypes, so we can suggest that our native cultivars of sour cherry can be considered as distinct genotypes for futures breeding programs and new cultivar identification. Results also confirm that the RAPD primers can be used for genetic studies and to evaluate the varieties for breeding programs.

scholarly journals Genetic analysis of species in the Genus Catasetum (ORCHIDACEAE) using RAPD Markers

2010 ◽  
Vol 53 (2) ◽  
pp. 375-387 ◽  
Author(s):  
Luciana do Valle Rego Oliveira ◽  
Ricardo Tadeu de Faria ◽  
Claudete de Fátima Ruas ◽  
Paulo Maurício Ruas ◽  
Melissa de Oliveira Santos ◽  
...  
Keyword(s):  
Molecular Markers ◽  
Genetic Variability ◽  
Genetic Analysis ◽  
Genetic Relationship ◽  
Genetic Similarity ◽  
Core Collection ◽  
Rapd Markers ◽  
Dna Amplification ◽  
Breeding Programs

In this work, RAPD molecular markers were used to access the genetic variability and to study the inter and intraespecifc relationship in a group of 37 species, including 56 individuals. A total of 15 RAPD primers were selected for DNA amplification. From a total of 221 bands analyzed, 209 (95%) were polymorphics. The level of interespecifc genetic similarity ranged from 37% between Catasetum complanatum and Catasetum laminatum to 83% between Catasetum triodon and Catasetum uncatum. The intraspecifc genetic similarity varied 88% for the individuals of Catasetum triodon to 93% between the individuals of Catasetum atratum and Catasetum macrocarpum. These results would contribute to understand the genetic relationship in Catasetum, to define the strategies to establish a germplasm core collection for the genus and to provide support for breeding programs.

scholarly journals Self-(in)compatibility in sour cherry (Prunus cerasus L.). A minireview

2006 ◽  
Vol 12 (2) ◽  
Author(s):  
A. Hegedűs
Keyword(s):  
Sweet Cherry ◽  
Sour Cherry ◽  
Competitive Interaction ◽  
Prunus Cerasus ◽  
Self Incompatibility ◽  
Limited Information ◽  
Genomic Arrangement ◽  
Near Future ◽  
Allotetraploid Species

Sour cherry (Prunus cerasus L.) is an allotetraploid species derived from hybridisation of the diploid sweet cherry (P avium L.) and the tetraploid ground cherry (P. fruticosa Pall.). Although numerous self-incompatible cultivars exist, the most sour cherry cultivars are self-compatible, which might be due to their tetraploid nature. This review is dedicated to show the limited information on the genetics of self-incompatibility in sour cherry accumulated during the last five years. Two different hypotheses (genomic arrangement of the alleles or the accumulation of non-functional S-haplotypes) are discussed. Heteroallelic sour cherry pollen was shown to be self-incompatible, which is counter to the Solanaceae where heteroallelic pollen frequently self-compatible due to a kind of competitive interaction between the two different alleles. This review highlights some inconsistencies in the hope that clarification will be achieved in the near future.

scholarly journals Implementation of a limited set of SSR markers for screening of genetic variability in Latvian and Swedish sour cherry (Prunus cerasus L.) genetic resources collections

2011 ◽  
Vol 65 (1-2) ◽  
pp. 21-28
Author(s):  
Gunārs Lācis ◽  
Isaak Rashal ◽  
Viktor Trajkovski
Keyword(s):  
Genetic Diversity ◽  
Genetic Variability ◽  
Genetic Resources ◽  
Ssr Markers ◽  
Genetic Similarity ◽  
Polymorphic Information Content ◽  
Sour Cherry ◽  
Prunus Cerasus ◽  
Discrimination Power ◽  
Ssr Loci

Implementation of a limited set of SSR markers for screening of genetic variability in Latvian and Swedish sour cherry (Prunus cerasusL.) genetic resources collectionsForty-one sour cherry (Prunus cerasusL.) accessions were evaluated using three SSR markers to characterise genetic diversity in the sour cherry genetic resource collections at the Latvia State Institute of Fruit-Growing (LIFG), Dobele, Latvia and the Division of Horticultural Genetics and Plant Breeding at Balsgård, Department of Crop Sciences, Swedish University of Agricultural Sciences (SLU-Balsgård), Sweden, and to test the usability and reliability of a small set of SSR markers for preliminary characterisation of sour cherry germplasm collections. The SSR loci were highly polymorphic with 7-14 alleles per locus. Heterozygosity and Polymorphic Information Content values ranged from 0.750 to 1.000 and 0.748-0.899, respectively, while discrimination power per locus varied from 0.716 to 0.965. Five to thirty genotypes were found in the sour cherry collections for the three tested SSR loci. The combined discrimination power of all loci was effectively 0.994 and 0.999 for the LIFG and SLU-Balsgård collections, respectively. The SSRs used were able to uniquely identify all accessions in the analysed genetic resources collections. The genotype data allowed estimation of genetic diversity and genetic characterisation of accessions in the collections. Genetic similarity analysis showed higher genetic similarity among the Baltic and Scandinavian sour cherry varieties, than between Baltic and Eastern European varieties.

scholarly journals Study genetic diversity in maize inbreds and improved hybrid vigor in hybrids produce to determine commercial hybrids in Iraq

2015 ◽  
Vol 5 (3) ◽  
pp. 728-731
Author(s):  
Ziyad A. Abed
Keyword(s):  
Genetic Diversity ◽  
Genetic Distance ◽  
Rapd Markers ◽  
Field Experiments ◽  
Random Amplified Polymorphic Dna ◽  
Hybrid Vigor ◽  
Breeding Programs ◽  
Genetic Studies ◽  
Maize Inbreds ◽  
High Level

 A field experiments was conducted in greenhouse to determinate the genetic diversity among 7 genotypes from maize(4 inbreds and 3hybrids) by using molecular markers with Random Amplified polymorphic DNA(RAPD),that shown high level of polymorphism among genotypes of maize ,where the percentage of polymorphism ranged from(66%) and (83.33%) the highest number of polymorphism band (16) and size fragment ranged between (3800 bp) with the primer ( Bnlg 1185 ) and the lowest 180 with the primer( Bnlg 1464).The genetic distance value ranged between (0.3451) and (0.6534) ,where the lowest genic distance between (k1 and k2),while the highest genetic distance between(k4) and (k3xk4).In this study RAPD markers were shown to be powerful to detect genetic diversity and provided us high polymorphism values within genotypes of maize ,also we can conclude for useful those primers for genetic studies in plant breeding programs for developing synthetic cultivars or improved inbreds of maize. 

scholarly journals Genetic Variability of 21 Tea Genotypes [Camellia sinensis (L.) O. Kuntze] Based on RAPD Markers

2018 ◽  
Vol 5 (2) ◽  
pp. 77
Author(s):  
Budi Martono ◽  
Syafaruddin Syafaruddin
Keyword(s):  
Genetic Diversity ◽  
Cluster Analysis ◽  
Genetic Similarity ◽  
Binary Data ◽  
Rapd Markers ◽  
Group Method ◽  
Breeding Programs ◽  
Pair Group ◽  
Monomorphic Band ◽  
And Cluster Analysis

<em>Knowing the genetic diversity in the tea germplasms collection is one of important conditions for assembling new superior varieties. Information of genetic diversity can be obtained through analysis using RAPD molecular markers. The study aimed to determine the genetic diversity of 21 tea genotypes based on RAPD markers. The research was conducted in Integrated Laboratory, Seameo Biotrop, Bogor, from July to September 2013. Genomic DNA was isolated from 21 tea genotypes leaf samples, then amplified with primer OPA 03, OPA 05, OPB 04, OPB 06, OPC 06, and OPD 08. Electrophoresis result was converted into binary data. The genetic similarity and cluster analysis calculation was done using NTSYS-pc version 2.10. In this research, 50 polymorphic bands (94,34%) and 3 monomorphic band (5,66%) were obtained. Cluster analysis based on Nei's genetic distance using the unweighted pair-group method with arithmatic (UPGMA) divided 21 tea genotypes into two groups at a genetic similarity value of 0,48. Group 1 consisted of 20 tea genotypes, while the second group comprised only a one genotype (Sin 27). The range of genetic similarity matrix was between 28%–92%, the lowest genetic similarity (28%) was found between GMB 4 and Sin 27 genotypes, while the highest (92%) was found between AS 2 and AS 1 genotypes. The information obtained can be utilized in breeding programs with the support of agronomic characters as well as in the conservation of tea germplasm.</em>

Genetic Analysis in vitis Using Molecular Markers

1995 ◽  
Author(s):  
Bruce Reisch ◽  
Pinhas Spiegel-Roy ◽  
Norman Weeden ◽  
Gozal Ben-Hayyim ◽  
Jacques Beckmann
Keyword(s):  
Genetic Analysis ◽  
Rapd Markers ◽  
Single Copy ◽  
Pinot Noir ◽  
Dna Fingerprint ◽  
Breeding Programs ◽  
Dna Mapping ◽  
Isozyme Loci ◽  
Bunch Rot ◽  
Selection Of

Genetic analysis and mapping in grapes has been difficult because of the long generation period and paucity of genetic markers. In the present work, chromosome linkage maps were developed with RAPD, RFLP and isozyme loci in interspecific hybrid cultivars, and RAPD markers were produced in a V. vinifera population. In three cultivars, there were 19 linkage groups as expected for a species with 38 somatic chromosomes. These maps were used to locate chromosome regions with linkages to important genes, including those influencing powdery mildew and botrytis bunch rot resistance; flower sex; and berry shape. In V. vinifera, the occurrence of specific markers was correlated with seedlessness, muscat flavor and fruit color. Polymorphic RAPD bands included single copy as well as repetitive DNA. Mapping procedures were improved by optimizing PCR parameters with grape DNA; by the development of an efficient DNA extraction protocol; and with the use of long (17- to 24-mer) primers which amplify more polymorphic loci per primer. DNA fingerprint analysis with RAPD markers indicated that vinifera cultivars could be separated readily with RAPD profiles. Pinot gris, thought to be a sort of Pinot noir, differed by 12 bands from Pinot noir. This suggests that while Pinot gris may be related to Pinot noir, it is not likely to be a clone. The techniques developed in this project are now being further refined to use marker-assisted selection in breeding programs for the early selection of elite seedlings. Furthermore, the stage has been set for future attempts to clone genes from grapes based upon map locations.

scholarly journals Genetics of sexual isolation in females of the Drosophila simulans species complex

1992 ◽  
Vol 60 (1) ◽  
pp. 25-31 ◽  
Author(s):  
Jerry A. Coyne
Keyword(s):  
Genetic Analysis ◽  
X Chromosome ◽  
Genetic Similarity ◽  
Species Complex ◽  
Sexual Isolation ◽  
Drosophila Simulans ◽  
Genetic Studies ◽  
Dominance Relationships ◽  
Behavioural Interactions ◽  
Total Divergence

SummaryGenetic analysis of hybrids between Drosophila simulans and D. sechellia shows that sexual isolation in females is caused by at least two genes, one on each major autosome, while the X chromosome has no effect. These results are similar to those of a previous study of hybrids between D. simulans and another sibling species, D. mauritiana. In this latter hybridization, each arm of the second chromosome carries genes causing sexual isolation in females, implying a total divergence of at least three loci. The genetic similarity between the D. simulans/D. mauritiana and D. simulans/D. sechellia hybridizations probably results from independent evolution and not phylogenetic artifacts, because the dominance relationships and behavioural interactions differ between the two hybridizations. The lack of an X-chromosome effect on sexual isolation contrasts with genetic studies of post-zygotic reproductive isolation, which invariably show strong effects of this chromosome.

scholarly journals Genetic Diversity Assessment and Identification of New Sour Cherry Genotypes Using Intersimple Sequence Repeat Markers

2014 ◽  
Vol 2014 ◽  
pp. 1-8 ◽  
Author(s):  
Roghayeh Najafzadeh ◽  
Kazem Arzani ◽  
Naser Bouzari ◽  
Ali Saei
Keyword(s):  
Cluster Analysis ◽  
Dna Marker ◽  
Sour Cherry ◽  
Issr Markers ◽  
Sequence Repeat ◽  
Breeding Programs ◽  
Genetic Studies ◽  
Diversity Assessment ◽  
Improved Cultivars ◽  
High Level

Iran is one of the chief origins of subgenus Cerasus germplasm. In this study, the genetic variation of new Iranian sour cherries (which had such superior growth characteristics and fruit quality as to be considered for the introduction of new cultivars) was investigated and identified using 23 intersimple sequence repeat (ISSR) markers. Results indicated a high level of polymorphism of the genotypes based on these markers. According to these results, primers tested in this study specially ISSR-4, ISSR-6, ISSR-13, ISSR-14, ISSR-16, and ISSR-19 produced good and various levels of amplifications which can be effectively used in genetic studies of the sour cherry. The genetic similarity among genotypes showed a high diversity among the genotypes. Cluster analysis separated improved cultivars from promising Iranian genotypes, and the PCoA supported the cluster analysis results. Since the Iranian genotypes were superior to the improved cultivars and were separated from them in most groups, these genotypes can be considered as distinct genotypes for further evaluations in the framework of breeding programs and new cultivar identification in cherries. Results also confirmed that ISSR is a reliable DNA marker that can be used for exact genetic studies and in sour cherry breeding programs.

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