scholarly journals Comparative analysis of genetic diversity in Norway spruce (Picea abies) clonal seed orchards and seed stands

2021 ◽  
Vol 49 (4) ◽  
pp. 12575
Author(s):  
Elena CIOCÎRLAN ◽  
Neculae ȘOFLETEA ◽  
Georgeta MIHAI ◽  
Maria TEODOSIU ◽  
Alexandru L. CURTU
Keyword(s):  
Genetic Diversity ◽  
Comparative Analysis ◽  
Picea Abies ◽  
Norway Spruce ◽  
Allelic Richness ◽  
Conifer Species ◽  
Seed Orchards ◽  
Eastern Carpathians ◽  
Nuclear Microsatellite ◽  
Planted Tree

Norway spruce, Picea abies (L.) Karst. is the most important conifer species in Romania and the most planted tree species in the Carpathian Mountains. Here we compare the genetic diversity of four Norway spruce clonal seed orchards and two seed stands located in the Eastern Carpathians. A set of highly polymorphic nuclear microsatellite markers was used. The analysis of genotypic identity of ramets for each Norway spruce clone in all seed orchards indicated that nearly all sampled ramets (97%) were genetically identical. The genetic diversity in seed orchards (He=0.700) was slightly smaller compared to the seed stands (He=0.718). Allelic richness was higher in seed stands (10.874), compared to clonal seed orchards (8.941). The Bayesian analysis indicated a genetic structure with two clusters, one corresponding to the clonal seed orchards and a second one consisting of the two seed stands. Our results provide valuable information for the management of Norway spruce seed orchards in Romania.

scholarly journals Comparing the Effectiveness of Exome Capture Probes, Genotyping by Sequencing and Whole-Genome Re-Sequencing for Assessing Genetic Diversity in Natural and Managed Stands of Picea abies

Forests ◽  
2020 ◽  
Vol 11 (11) ◽  
pp. 1185
Author(s):  
Helena Eklöf ◽  
Carolina Bernhardsson ◽  
Pär K. Ingvarsson
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Picea Abies ◽  
Norway Spruce ◽  
Large Scale ◽  
Genotyping By Sequencing ◽  
Complexity Reduction ◽  
Exome Capture ◽  
Genome Wide ◽  
Targeted Capture

Conifer genomes are characterized by their large size and high abundance of repetitive material, making large-scale genotyping in conifers complicated and expensive. One of the consequences of this is that it has been difficult to generate data on genome-wide levels of genetic variation. To date, researchers have mainly employed various complexity reduction techniques to assess genetic variation across the genome in different conifer species. These methods tend to capture variation in a relatively small subset of a typical conifer genome and it is currently not clear how representative such results are. Here we take advantage of data generated in the first large-scale re-sequencing effort in Norway spruce and assess how well two commonly used complexity reduction methods, targeted capture probes and genotyping by sequencing perform in capturing genome-wide variation in Norway spruce. Our results suggest that both methods perform reasonably well for assessing genetic diversity and population structure in Norway spruce (Picea abies (L.) H. Karst.). Targeted capture probes were slightly more effective than GBS, likely due to them targeting known genomic regions whereas the GBS data contains a substantially greater fraction of repetitive regions, which sometimes can be problematic for assessing genetic diversity. In conclusion, both methods are useful for genotyping large numbers of samples and they greatly reduce the cost involved with genotyping a species with such a complex genome as Norway spruce.

scholarly journals Comparison of Genetic Diversity in Naturally Regenerated Norway Spruce Stands and Seed Orchard Progeny Trials

Forests ◽  
2019 ◽  
Vol 10 (10) ◽  
pp. 926 ◽  
Author(s):  
Dainis Ruņģis ◽  
Solveiga Luguza ◽  
Endijs Bāders ◽  
Vilnis Šķipars ◽  
Āris Jansons
Keyword(s):  
Genetic Diversity ◽  
Norway Spruce ◽  
Gene Diversity ◽  
Seed Orchard ◽  
Seed Orchards ◽  
Spruce Stands ◽  
Ssr Loci ◽  
Naturally Regenerated Stands ◽  
Average Gene ◽  
Environmental Events

Forest ecosystems in Europe are expected to experience changes in temperature and water regimes associated with increased risks of extreme environmental events and disasters. Genetic diversity and relatedness has been linked to resilience of forest stands and landscapes. Genetic diversity indicators were compared between a Norway spruce population naturally regenerated after extensive windthrow and Norway spruce progeny populations derived from two seed orchards. In addition, genetic diversity in an undisturbed stand in a long established national park and a spruce genetic resource stand were analyzed. Populations were genotyped at 11 simple sequence repeat (SSR) loci. Average genetic diversity indicators were similar across populations. However, the total number of alleles, average number of alleles over all loci, effective number of alleles, average gene diversity, and average allelic richness were highest in the naturally regenerated population and lowest in one of the seed orchard progeny populations. The genetic diversity in progeny from seed orchards used for stand renewal is comparable to the genetic diversity in naturally regenerated stands. However, fluctuations in seed production between years can have a large impact on genetic diversity in seed orchard progeny. The use of improved Norway spruce germplasm deployed via clonal seed orchards for forest renewal can maintain similar levels of genetic diversity compared to naturally regenerated stands, while also increasing production and timber quality.

scholarly journals Genetic differentiation of Norway spruce (Picea abies (L.) Karst.) trees with diferent crown types from the mountain Golija

Genetika ◽  
2015 ◽  
Vol 47 (3) ◽  
pp. 849-861 ◽  
Author(s):  
Vladislava Galovic ◽  
Mirjana Sijacic-Nikolic ◽  
Robert Safhauzer ◽  
Dijana Cortan ◽  
Sasa Orlovic
Keyword(s):  
Genetic Diversity ◽  
Cluster Analysis ◽  
Picea Abies ◽  
Genetic Differentiation ◽  
Norway Spruce ◽  
Plant Species ◽  
Genetic Characterization ◽  
Similarity Matrix ◽  
Primer Sets

The knowledge of genetic diversity degree of given species is of great importance for the successful process of breeding and genetic conservation. The aim of conducted research was to determine the genetic differentiation of Norway spruce (Picea abies (L.) Karst) genotypes with very specific narrow pyramidal and normal crown type, which grows at different altitude of the mountain Golija. For assessment of genetic similarities or differences between studied genotypes co-dominant microsatellite system had been used. This system has proven to be reliable and efficient in the genetic characterization of plant species. In total 22 primer sets have been tested, while 16 (73%) of them resulted in the successful yield of the amplified product. The analysis show that studied individuals had in total 130 alleles, in average 8.125 polymorphic alleles per each locus. The lowest polymorphism was detected in the locus EATC1D10, EATC1F03B and EATC2G09, while the highest level of polymorphism was detected in EATC2G08. Based on microsatellite date and similarity matrix, cluster analysis dendrogram indicates existence of the vertical differentiation of studied genotypes, which is consistent with results of previous Norway spruce studies.

scholarly journals Adaptability of Narrow-Crowned Norway Spruce Ideotype (Picea abies (L.) Karst. pendula Form) in 25 Years Half-Sib Comparative Trials in the Eastern Carpathians

Forests ◽  
2019 ◽  
Vol 10 (5) ◽  
pp. 395 ◽  
Author(s):  
Ecaterina Apostol ◽  
Marius Budeanu
Keyword(s):  
Picea Abies ◽  
Norway Spruce ◽  
Wood Density ◽  
Environmental Conditions ◽  
Growth Traits ◽  
Natural Populations ◽  
Tree Height ◽  
Field Trials ◽  
Breeding Strategy ◽  
Eastern Carpathians

This study analysed the stability of the narrow-crowned Norway spruce (pendula form) compared with the classic form of spruce (pyramidalis form) in two half-sib field trials located in the Romanian Carpathians. From eight natural populations, representative of three of the four large spruce spread areas in Romania, open-pollinated seeds from 48 trees (24 pendula ideotype and 24 pyramidalis form) were collected to install the Maneciu and Soveja trials. In these trials, at age 25 years, measurements were performed for the following traits: tree height, breast height diameter, crown diameter, number of branches per whorl and dominant branch diameter. Some important traits were calculated: average volume per tree, trees’ slenderness, crown slenderness and branches’ finesse. Pearson’s simple correlations between the analysed traits were calculated and also the correlations between traits and geographic and climatic gradients of provenances’ origin. In addition, cores were collected to compare the wood density of the two forms of spruce. In both trials, but especially in the limitative environmental conditions of the Soveja trial, the narrow crowned form of Norway spruce (Picea abies f. pendula) presented more favourable average results than the normal crown spruce form for the most important stand stability traits: trees’ slenderness, wood density, branches’ diameter and branches’ finesse. Between spruce crown forms, in both trials, no significant differences were observed for the growth traits, but between trials, higher results resulted in optimal environmental conditions of the Măneciu test (+89% for the trees’ volume). The trees from different provenances and with specific forms of the crown reacted differently to the changing of the testing site, which required the adoption of maximum caution for decisions regarding the transfer of forest reproductive materials. The correlations between the analysed traits converge towards the adoption of a two-step breeding strategy, starting by selection of narrow crowned trees after stability traits.

Genetic diversity in managed subpopulations of Norway spruce [Picea abies (L.) Karst.]

2006 ◽  
Vol 222 (1-3) ◽  
pp. 266-271 ◽  
Author(s):  
F. Maghuly ◽  
W. Pinsker ◽  
W. Praznik ◽  
S. Fluch
Keyword(s):  
Genetic Diversity ◽  
Picea Abies ◽  
Norway Spruce

scholarly journals Naohidemyces vaccinii sporulates on wild species of ground flora in Finnish Norway spruce seed orchards but Thekopsora areolata does not on other species than Prunus

Silva Fennica ◽  
2021 ◽  
Vol 55 (5) ◽  
Author(s):  
Juha Kaitera ◽  
Leena Aarnio ◽  
Tiina Ylioja ◽  
Jouni Karhu
Keyword(s):  
Picea Abies ◽  
Norway Spruce ◽  
Wild Species ◽  
Calluna Vulgaris ◽  
Vaccinium Myrtillus ◽  
Seed Orchards ◽  
Empetrum Nigrum ◽  
Ground Flora

Thekopsora areolata Picea abies Picea T. areolata T. areolata Vaccinium myrtillus V. vitis-idaea Empetrum nigrum Calluna vulgaris Thekopsora areolata Thekopsora 2 T. areolata V. myrtillus V. vitis-idaea V. myrtillus V. vitis-idaea V. myrtillus V. vitis-idaea Naohidemyces vaccinii Vaccinium T. areolata Prunus

scholarly journals Demography and natural selection have shaped genome-wide variation in the widely distributed conifer Norway Spruce (Picea abies)

2019 ◽  
Author(s):  
Xi Wang ◽  
Carolina Bernhardsson ◽  
Pär K. Ingvarsson
Keyword(s):  
Genetic Diversity ◽  
Natural Selection ◽  
Picea Abies ◽  
Population Size ◽  
Effective Population Size ◽  
Norway Spruce ◽  
Demographic History ◽  
Sequencing Data ◽  
Effective Population ◽  
Genome Wide

AbstractUnder the neutral theory, species with larger effective population sizes are expected to harbour higher genetic diversity. However, across a wide variety of organisms, the range of genetic diversity is orders of magnitude more narrow than the range of effective population size. This observation has become known as Lewontin’s paradox and although aspects of this phenomenon have been extensively studied, the underlying causes for the paradox remain unclear. Norway spruce (Picea abies) is a widely distributed conifer species across the northern hemisphere and it consequently plays a major role in European forestry. Here, we use whole-genome re-sequencing data from 35 individuals to perform population genomic analyses in P. abies in an effort to understand what drives genome-wide patterns of variation in this species. Despite having a very wide geographic distribution and an enormous current population size, our analyses find that genetic diversity of P.abies is low across a number of populations (p=0.005-0.006). To assess the reasons for the low levels of genetic diversity, we infer the demographic history of the species and find that it is characterised by several re-occurring bottlenecks with concomitant decreases in effective population size can, at least partly, provide an explanation for low polymorphism we observe in P. abies. Further analyses suggest that recurrent natural selection, both purifying and positive selection, can also contribute to the loss of genetic diversity in Norway spruce by reducing genetic diversity at linked sites. Finally, the overall low mutation rates seen in conifers can also help explain the low genetic diversity maintained in Norway spruce.

Inter-year variation in selfing, background pollination, and paternal contribution in a Norway spruce clonal seed orchard

2014 ◽  
Vol 44 (7) ◽  
pp. 760-767 ◽  
Author(s):  
Monika Dering ◽  
Andrzej Misiorny ◽  
Władysław Chałupka
Keyword(s):  
Picea Abies ◽  
Microsatellite Markers ◽  
Norway Spruce ◽  
Pollen Dispersal ◽  
Geographic Origin ◽  
Seed Orchard ◽  
Seed Crop ◽  
Clonal Seed Orchard ◽  
Paternal Contribution ◽  
Nuclear Microsatellite

We aimed to investigate inter-year variability in mating system and paternity in an experimental Norway spruce (Picea abies (L.) Karst.) clonal seed orchard that was established with five geographically distinct populations. Using five nuclear microsatellite markers, we analysed 1396 progeny of five mother trees representing each of the populations in three successive mast-years. Selfing varied among mother trees, ranging from 0% to 18.3% with a mean of 13.9% in 1994, 10.1% in 2004, and 7.6% in 2006. Considerable background pollination was observed in each of the three studied mast-years and reached ca. 58%. The paternity assignment conducted showed an uneven male contribution to the seed crop, what was partly related to the number of ramets per paternal clone. All provenances contributed to the seed crop, but with different input, and two provenances dominated. Effective pollen dispersal was significantly determined by distance, with 72.2% of the seed crop resulting from crosses at a distance of up to 15 m. Our study indicated that despite considerable differences in the geographic origin of populations, inter-mating between clones from each population was possible, which generally agrees with the expectations related to the establishment of this seed orchard.

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