scholarly journals Comparison of Genetic Diversity in Naturally Regenerated Norway Spruce Stands and Seed Orchard Progeny Trials

Forests ◽  
2019 ◽  
Vol 10 (10) ◽  
pp. 926 ◽  
Author(s):  
Dainis Ruņģis ◽  
Solveiga Luguza ◽  
Endijs Bāders ◽  
Vilnis Šķipars ◽  
Āris Jansons
Keyword(s):  
Genetic Diversity ◽  
Norway Spruce ◽  
Gene Diversity ◽  
Seed Orchard ◽  
Seed Orchards ◽  
Spruce Stands ◽  
Ssr Loci ◽  
Naturally Regenerated Stands ◽  
Average Gene ◽  
Environmental Events

Forest ecosystems in Europe are expected to experience changes in temperature and water regimes associated with increased risks of extreme environmental events and disasters. Genetic diversity and relatedness has been linked to resilience of forest stands and landscapes. Genetic diversity indicators were compared between a Norway spruce population naturally regenerated after extensive windthrow and Norway spruce progeny populations derived from two seed orchards. In addition, genetic diversity in an undisturbed stand in a long established national park and a spruce genetic resource stand were analyzed. Populations were genotyped at 11 simple sequence repeat (SSR) loci. Average genetic diversity indicators were similar across populations. However, the total number of alleles, average number of alleles over all loci, effective number of alleles, average gene diversity, and average allelic richness were highest in the naturally regenerated population and lowest in one of the seed orchard progeny populations. The genetic diversity in progeny from seed orchards used for stand renewal is comparable to the genetic diversity in naturally regenerated stands. However, fluctuations in seed production between years can have a large impact on genetic diversity in seed orchard progeny. The use of improved Norway spruce germplasm deployed via clonal seed orchards for forest renewal can maintain similar levels of genetic diversity compared to naturally regenerated stands, while also increasing production and timber quality.

scholarly journals Analysis of Genetic Diversity within Nepalese Maize Populations Using SSR Markers

1970 ◽  
Vol 11 ◽  
pp. 1-8 ◽  
Author(s):  
Dil Bahadur Gurung ◽  
Maria Luz C George ◽  
Quirino D Dela Cruz
Keyword(s):  
Genetic Diversity ◽  
Ssr Markers ◽  
Gene Diversity ◽  
Genetic Distances ◽  
Maize Breeding ◽  
Maize Populations ◽  
Maize Varieties ◽  
Ssr Loci ◽  
Average Gene ◽  
Hybrid Maize

Information on genetic diversity and relationships among breeding materials is necessary for hybrid maize breeding. Four open-pollinated varieties were analyzed using SSR markers to determine the genetic diversity within the varieties. In each variety, 15 individuals were genotyped with 30 SSR markers. Average heterozygosity percentage of the varieties was 45.07%, ranging from 35.23% in Rampur Composite to 54.64% in Khumal Yellow, indicating the higher level of heterozygosity in these two varieties. An average PIC value across all the polymorphic SSR loci was 0.50; which ranged from 0.47 in Manakamana-2 to 0.52 in Khumal Yellow and Arun-4. At the genotype level, the range was from 0.07 in umc1161 to 0.84 in umc1136. The total number of alleles detected was 415 for 30 SSR markers in 60 genotypes. The unique and common alleles detected respectively were 27 and 71. The average number of alleles per locus was 3.45 among the varieties, ranging from 3.21in Manakamana-2 to 3.76 in Khumal Yellow. Average gene diversity across the varieties was 0.54 and ranged from 0.51 in Manakamana-2 to 0.56 in Khumal Yellow and Arun-4. The genetic similarity coefficient of all individuals among the varieties was seen at 0.35.The MRD values were higher between Arun-4 and Manakamana-2 (0.290) and low between Khumal Yellow and Rampur Composite (0.221). Estimate of genetic distances among the varieties showed that Rampur Composite, Khumal Yellow, and Manakamana-2 were closely related sharing the similar genetic backgrounds, whereas Arun-4 was genetically more distantly related. Efforts are being made for the development and evaluation of inbred lines from these distantly related maize varieties for developing high yielding maize hybrids. Key Words: genetic diversity; maize hybrid; SSR markers DOI: 10.3126/njst.v11i0.4082Nepal Journal of Science and Technology 11 (2010) 1-8

Comparisons of genetic diversity in white spruce (Picea glauca) and jack pine (Pinus banksiana) seed orchards with natural populations

2001 ◽  
Vol 31 (6) ◽  
pp. 943-949 ◽  
Author(s):  
M J.W Godt ◽  
J L Hamrick ◽  
M A Edwards-Burke ◽  
J H Williams
Keyword(s):  
Genetic Diversity ◽  
Picea Glauca ◽  
Pinus Banksiana ◽  
Gene Diversity ◽  
Natural Populations ◽  
Source Area ◽  
White Spruce ◽  
Seed Orchard ◽  
Jack Pine ◽  
Seed Orchards

Genetic diversity within a white spruce (Picea glauca (Moench) Voss) seed orchard (consisting of 40 clones) and a jack pine (Pinus banksiana Lamb.) seed orchard (31 clones) was assessed and compared with genetic diversity in natural populations within the source area for the orchards. Genetic diversity was determined at 18 allozyme loci for seven white spruce populations and 27 loci for five jack pine populations, and the two orchards. Gene diversity maintained within the seed orchards (He = 0.157 for white spruce and 0.114 for jack pine) was similar to that found within the source area for each species (He = 0.164 and 0.114 for white spruce and jack pine, respectively). However, nine white spruce alleles and 12 jack pine alleles identified in the source area were not present in the seed orchards. These alleles occurred at low frequencies in the natural populations (mean frequency = 0.023 and 0.014 for white spruce and jack pine, respectively). Mean genetic identities between the seed orchards and their natural populations were high (>0.99), indicating that common allele occurrences and frequencies were similar between the orchards and their source area. One allele in the white spruce orchard and two in the jack pine seed orchard did not occur within the natural population samples. Simulations indicated that randomly reducing the number of clones within the seed orchards would decrease allelic richness slightly but would have little effect on overall gene diversity.

scholarly journals Forest decline has not reduced genetic diversity of naturally regenerated Norway spruce from the Beskids, Poland

2015 ◽  
Vol 64 (1-6) ◽  
pp. 270-278 ◽  
Author(s):  
Elżbieta Chomicz-Zegar ◽  
J. A. Nowakowska ◽  
A. Tereba
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Norway Spruce ◽  
Forest Decline ◽  
Gene Diversity ◽  
Young Generation ◽  
Primeval Forest ◽  
Initial Stage ◽  
Spruce Stands ◽  
High Level

AbstractNorway spruce forests decline in the Beskids raises concerns about reduction of genetic variation in a next generation of forest. We aim to determine whether the genetic diversity in declining spruce stands was successfully transmitted to its self-seeded progeny. Using three nuclear microsatellite markers, we carried out the genetic assessment of naturally regenerated progeny and compered them with their maternal stands at an initial stage of decline. We investigated three spruce stands from the Śląski and Żywiecki Beskid and one primeval forest from the Tatras, as a reference. We noticed a high level of gene diversity, allelic richness and an effective number of alleles in progeny of all stands, without differences between declining stands from the Beskids and the primeval forest. The gene diversity was similar in maternal trees and their offspring. Higher gene diversity and generally higher number of alleles were noticed in young generation of stands. Genetic identity between generations was high in analyzed seed stands and the highest in the primeval forest. The results we presented indicate no significant effect of drastic reduction in the population size due to the forest decline on the level of genetic variation in self-seeded progeny of Norway spruce from the Beskids.

scholarly journals THE INTENSIVE MANAGEMENT OF NORWAY SPRUCE: A COMPROMISE BETWEEN FINANCIAL GAIN AND GENETIC DIVERSITY?

2019 ◽  
Vol 1 ◽  
pp. 11
Author(s):  
Solveiga Luguza ◽  
Endijs Bāders ◽  
Pauls Zeltiņš ◽  
Roberts Čakšs ◽  
Dainis Edgars Ruņģis ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Norway Spruce ◽  
Rotation Period ◽  
Seed Orchard ◽  
Raw Material ◽  
Plant Production ◽  
Radial Increment ◽  
Negative Consequences ◽  
Spruce Stands ◽  
The Impact

INTRODUCTION Norway spruce (Picea abies (L.) Karst.) is a high-yielding commercial tree species grown in the Baltic sea region. It not only ensures timber production, but also provides a notable amount of crown branch biomass and a substantial amount of technically accessible stump biomass for energy. Thus, it has a high potential as a source of renewable materials and energy in the bioeconomy. Recent studies in Latvia have shown no long-term negative consequences to forest ecosystems from whole-tree harvesting. Hence, this management method can be considered sustainable for Norway spruce stands in fertile mineral soils. Not only yield, but also risks need to be considered to ensure financial sustainability, mainly the impact of wind-storms, drought, and pests. A combination of silviculture and genetics (tree breeding) can be used to reduce the probability of damage to Norway spruce stands. The aim of our study was to assess the potential of simultaneously ensuring both genetic gain and diversity in Norway spruce plantations. MATERIALS AND METHODS Data characterizing/showing tree growth – current height, diameter at breast height, survival, as well as radial increment (increment cores) – were obtained from a 50-year-old Norway spruce plantation. Data characterizing genetic diversity were collected from a gene reserve stand (48 trees), Norway spruce seed orchard progenies consisting of 20 clones, as well as 12 pure Norway spruce stands. DNA was extracted and analysed with 6 to 14 nuclear SSR markers. RESULTS No significant differences were observed between the seed orchard progenies, the trees from the gene reserve stand and other Norway spruce stands using the assessed parameters – allelic richness, observed heterozygosity, genetic diversity and relatedness. This indicates that the use of a seed orchard containing a relatively low number of clones as a seed source for plant production and forest regeneration would not have a negative impact on genetic diversity. However, notable gains in productivity can be achieved using selected plant material. At the age of 50 years, phenotypically selected clones in the low-density (5×5m) plantation had a mean yield of 327±42 m3ha-1, significantly exceeding the mean yield (277±56 m3ha-1) observed in Norway spruce stands of the same age and the same site conditions (forest type), while no significant differences were observed compared to the average stand yield at the age of 80 years (347±47 m3ha-1). The target diameter of 31 cm was reached at the age of 42±0.9 years on average, but this varied significantly among clones. CONCLUSION The results demonstrate a notable potential to reduce the rotation period, thereby: a) increasing the availability of raw material for further processing and energy production, and b) reducing financial risks due to lowering the probability that the stand will sustain substantial damage (i.e. wind storm). This gain can be achieved without significantly compromising genetic diversity. Further studies shall address potential changes in genetic diversity at the landscape level over a longer period when using a very limited set of clones. Stands in nature reserves could serve as a basis for comparison in such studies.

Field performance and early test results of offspring from two Norway spruce seed orchards containing clones transferred to warmer climates

2007 ◽  
Vol 37 (3) ◽  
pp. 515-522 ◽  
Author(s):  
Tore Skrøppa ◽  
Ketil Kohmann ◽  
Øystein Johnsen ◽  
Arne Steffenrem ◽  
Øyvind M. Edvardsen
Keyword(s):  
Norway Spruce ◽  
Field Performance ◽  
Seed Orchard ◽  
Field Trials ◽  
Climatic Conditions ◽  
Test Results ◽  
Seed Orchards ◽  
Low Altitude ◽  
Natural Stands ◽  
Seed Crops

We present results from early tests and field trials of offspring from two Norway spruce ( Picea abies (L.) Karst.) seed orchards containing clones that have been transferred from high altitudes to sea level and from northern to southern latitudes. Seedlings from seeds produced in the low-altitude seed orchard developed frost hardiness later at the end of the growth season, flushed later in field trials, and grew taller than seedlings from seeds produced in natural stands. They had the lowest mortality rate and the lowest frequency of injuries in the field trials. Similar results were observed in seedlings from seeds produced in the southern seed orchard. We found no adverse effects of the changed growth rhythm. Seedlings from two seed crops in the southern orchard, produced in years with a warm and a cold summer, had different annual growth rhythms. The results are explained mainly by the effects of the climatic conditions during the reproductive phase. Seed crops from different years in the same seed orchard may produce seedlings that perform as if they were from different provenances. It is argued that the effects of the climatic conditions during seed production must contribute to the variation among provenances of Norway spruce.

scholarly journals Analysis of Genetic Diversity and Population Structure of Some Bangladeshi Rice Landraces and HYV

2012 ◽  
Vol 4 (3) ◽  
pp. 757-767 ◽  
Author(s):  
M. M. Hassan ◽  
A. K. M. Shamsuddin ◽  
M. M. Islam ◽  
K. Khatun ◽  
J. Halder
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Genetic Distance ◽  
Gene Diversity ◽  
Allele Number ◽  
Rice Landraces ◽  
Efficient Management ◽  
Ssr Loci ◽  
Pattern Of Variation ◽  
Rice Improvement

Information on the patterns of genetic variation and population structure is essential for rational use and efficient management of germplasms. It helps in monitoring germplasm and can also be used to predict potential genetic gains. Therefore, in the present study genetic diversity of 59 rice genotypes were assessed using 8 simple sequence repeat (SSR) primers. By the DNA profiling, a total of 114 alleles were detected. Allele number per/locus ranged from 9 to 27, with an average of 14.25. Average polymorphism information content (PIC) value was 0.857 with lowest 0.767 to highest 0.857. Mean gene diversity over all SSR loci was 0.870 with a range from 0.792 to 0.948. Fst values for each locus varied from 0.071 to 0.262. Genetic distance between the variety pair ranged from 0.33 to 1.0. The lowest genetic distance was found between Rajashili and Kumragori (2). Cluster and principal coordinate analysis (PCoA) analysis revealed similar pattern of variation. Marker RM11300 was found most polymorphic and robust among the accessions and can be widely used for rice germplasm characterization. The exclusive variability and unique feature of germplasm found in this study can be a gateway for both domestic and global rice improvement.© 2012 JSR Publications. ISSN: 2070-0237 (Print); 2070-0245 (Online). All rights reserved.doi: http://dx.doi.org/10.3329/jsr.v4i3.10416 J. Sci. Res. 4 (3), 757-767 (2012)

scholarly journals Molecular characterization of wheat (Triticum aestivum L.) genotypes through SSR markers

2012 ◽  
Vol 37 (3) ◽  
pp. 389-398 ◽  
Author(s):  
S Islam ◽  
MS Haque ◽  
RM Emon ◽  
MM Islam ◽  
SN Begum
Keyword(s):  
Genetic Diversity ◽  
Triticum Aestivum ◽  
Genetic Distance ◽  
Microsatellite Markers ◽  
Gene Diversity ◽  
Polymorphic Information Content ◽  
Allelic Diversity ◽  
Triticum Aestivum L ◽  
Allele Number ◽  
Average Gene

A study was undertaken to examine the genetic diversity of 12 wheat (Triticum aestivum L.) genotypes, using 4 simple sequence repeats (SSRs). A total of 10 alleles were found. Allele number per locus ranged from 2 to 4 with an average of 2.5. The polymorphic information content (PIC) values ranged from 0.2755 to 0.5411 with an average of 0.3839. The average gene diversity over all SSR loci for the 12 wheat genotypes was 0.4688, ranging from 0.3299 to 0.6042. Cluster analysis based on microsatellite allelic diversity discriminated the varieties into different clusters. Genetic diversity was the highest between variety Gourab and Akbar as well as Gourab and BAW-1064, showing a genetic distance value of 0.4697. The genetic distance was lowest between Balaka and Aghrani as well as Triticale and BAW-1036. Positive correlations were found between gene diversity, number of alleles, the allele size range and the types of repeat motif of microsatellite markers. It was found from this study that microsatellite markers could characterize and discriminate all of the genotypes. More primers should be used for saturation of different regions in further studies. Bangladesh J. Agril. Res. 37(3): 389-398, September 2012 DOI: http://dx.doi.org/10.3329/bjar.v37i3.12082

scholarly journals Evaluation of nutraceuticals including vitamin B12 and xenobiotic degradation capacity of Pleurotus species

2019 ◽  
Author(s):  
Yashvant Patel ◽  
Sanjay Kumar Vishwakarma ◽  
Kumari Sunita
Keyword(s):  
Genetic Diversity ◽  
Dye Degradation ◽  
Gene Diversity ◽  
Selection Process ◽  
Uttar Pradesh ◽  
Crude Enzyme Extract ◽  
Information Index ◽  
Wide Range ◽  
Laccase Enzyme ◽  
Average Gene

AbstractDiverse edaphic zone (namely: usar, wastelands, forest area, wetlands, flood prone area and fertile lands) were identified in the eastern part of Uttar Pradesh and collected species of Pleurotus for present study. A total of 39 purified isolates were evaluated for the presence of neutraceuticals like proteins, carbohydrates, phenolic and vitamin B12 along with xenobiotic dye degradation capacity for textile dyes (MG and BPB) and production of laccase enzyme simultaneously. Isolate no. 06, appeared most distant in dendrogram having two major clusters, which also showed highest MG degradation capacity, however, other isolates also showed excellent degradation of BPB; and the laccase activity was found in the range of 4.03 to 19.13 IU/ml of crude enzyme extract from mycelia. All the isolates used in the present study, were also mounted for their genetic diversity analysis through RAPD. Diversity study revealed gene frequency from 0.012 to 0.987 and the average gene diversity for all RAPD loci were 0.244. The Shannon Information Index was 0.397. The unbiased genetic similarity among all pairs of isolates was 0.36 to 0.93 with a mean of 0.64. Significant genetic diversity, nutraceuticals and laccase enzyme availability and dye degradation capacity within the studied genus Pleurotus was found, which makes necessary to carry out a selection process in each one for superior selection not only for human being but also many aquatic as well as other terrestrial flora and fauna. Present investigation suggest that due to wide range of variation within species, the adaptation of strains to different edaphic zones must be taken into account in selection processes.

scholarly journals Genetic diversity of seeds from four German Douglas fir (Pseudotsuga menziesii) seed orchards

2021 ◽  
Author(s):  
Birte Pakull ◽  
Pascal Eusemann ◽  
Janine Wojacki ◽  
Diana Ahnert ◽  
Heike Liesebach
Keyword(s):  
Genetic Diversity ◽  
Pseudotsuga Menziesii ◽  
Seed Orchard ◽  
Small Population ◽  
Douglas Fir ◽  
Next Generation ◽  
Seed Orchards ◽  
Population Sizes ◽  
Spatial Isolation ◽  
Offspring Generation

AbstractIn Germany, Douglas fir (Pseudotsuga menziesii Franco) is seen as a valuable species for future cultivation in times of climate change. Local seed production in seed stands and seed orchards may secure that local adaptation is transferred to the next generation, but small population sizes could lower genetic diversity and thus future adaptability. Here we analyse the transfer of genetic diversity from parent to offspring generation in four older German seed orchards. We detected low pollen contamination rates due to high levels of spatial isolation. Even with a relatively low number of 40 clones, seed orchard design with randomized and repeated planting of clones led to low selfing rates, and despite uneven parental contributions, the number of successful parents and the level of genetic intermixture were high enough to allow the transfer of an adequate part of the genetic diversity to the next generation. Larger numbers, however, might be needed to reliably conserve the entire genetic diversity over succeeding generations. Conclusions on the establishment of future seed orchards and regarding areas requiring further research are drawn at the end of the paper.

scholarly journals Comparative analysis of genetic diversity in Norway spruce (Picea abies) clonal seed orchards and seed stands

2021 ◽  
Vol 49 (4) ◽  
pp. 12575
Author(s):  
Elena CIOCÎRLAN ◽  
Neculae ȘOFLETEA ◽  
Georgeta MIHAI ◽  
Maria TEODOSIU ◽  
Alexandru L. CURTU
Keyword(s):  
Genetic Diversity ◽  
Comparative Analysis ◽  
Picea Abies ◽  
Norway Spruce ◽  
Allelic Richness ◽  
Conifer Species ◽  
Seed Orchards ◽  
Eastern Carpathians ◽  
Nuclear Microsatellite ◽  
Planted Tree

Norway spruce, Picea abies (L.) Karst. is the most important conifer species in Romania and the most planted tree species in the Carpathian Mountains. Here we compare the genetic diversity of four Norway spruce clonal seed orchards and two seed stands located in the Eastern Carpathians. A set of highly polymorphic nuclear microsatellite markers was used. The analysis of genotypic identity of ramets for each Norway spruce clone in all seed orchards indicated that nearly all sampled ramets (97%) were genetically identical. The genetic diversity in seed orchards (He=0.700) was slightly smaller compared to the seed stands (He=0.718). Allelic richness was higher in seed stands (10.874), compared to clonal seed orchards (8.941). The Bayesian analysis indicated a genetic structure with two clusters, one corresponding to the clonal seed orchards and a second one consisting of the two seed stands. Our results provide valuable information for the management of Norway spruce seed orchards in Romania.

Sign in / Sign up

Export Citation Format

Share Document