scholarly journals Variability and genetic structure in fragments of Eugenia involucrata De Candolle established through microsatellite markers

2021 ◽  
Vol 51 (5) ◽  
Author(s):  
Charlene Moro Stefanel ◽  
Lia Rejane Silveira Reiniger ◽  
Caetano Miguel Lemos Serrote ◽  
Valdir Marcos Stefenon ◽  
Rafael Plá Matielo Lemos

ABSCTRACT: Eugenia involucrata DC. is a forest species with high environmental and economic potential. The objective of this study was to quantify the genetic variability and analyzed the genetic structure of three natural fragments located in the central region of the Rio Grande do Sul state, Brazil. We used four microsatellite loci developed for the congener species Eugenia uniflora and using GenAlEx 6.5 software, parameters of genetic variability and its partition among and within fragments were estimated for each locus. We observed high levels of genetic variability (3.67 alleles per locus; HO = 0.815; HE = 0.625; FIS = −0.294), most of which (93%) were distributed within the fragments, suggesting that these individuals came from a single original population. Gene flow between fragments was high (2.35 to 4.56 migrants per generation), resulting in low genetic differentiation indexes (FST values ranging from 0.052 to 0.096). The fragments showed high genetic variability, distributed within the remnants themselves, and low genetic differentiation. Our results have repercussions for planning locally adapted germplasm collections for forest restoration programs, thereby avoiding the implantation of populations with an exogamous depression.

2000 ◽  
Vol 23 (3) ◽  
pp. 639-648 ◽  
Author(s):  
Cecilia Bessega ◽  
Beatriz O. Saidman ◽  
Juan C. Vilardi

Allozyme and random amplified polymorphic DNA (RAPD) techniques have been compared for their usefulness for genetic and taxonomic studies in Prosopis glandulosa and P. velutina populations. Isozymes and RAPDs yielded similarly high estimates of genetic variability. Genetic structure and differentiation were analyzed through non-hierarchical Wright's F DT. For all populations considered, both markers produced low gene flow (Nm < 1) estimates. When only P. glandulosa populations were analyzed, isozyme data yielded higher gene flow estimates (Nm > 1), in agreement with that expected for conspecific populations. However, in RAPD data the expected reduction in F DT and the increase in Nm were not observed. Correlation between F DT and geographical distance matrices (Mantel test) for all populations was significant (P = 0.02) when based on isozymes, but not so (P = 0.33) when based on RAPDs. No significant associations among genetic and geographical or climatic variables were observed. Two isoenzyme systems (GOT and PRX) enabled us to distinguish between P. glandulosa and P. velutina, but no diagnostic band for recognition of populations or species studied here were detected by RAPD. However, RAPD markers showed higher values for genetic differentiation among conspecific populations of P. glandulosa and a lower coefficient of variation than those obtained from isozymes.


2009 ◽  
Vol 100 (1) ◽  
pp. 75-85 ◽  
Author(s):  
M.H. Chen ◽  
S. Dorn

AbstractLittle is known about genetic differentiation and gene flow in populations of insect species that have a high genetic variability in dispersal but lack morphologically visible morphs that disperse. These characteristics apply to the codling moth, Cydia pomonella L. (Lepidoptera: Tortricidae), a major pest of fruits and nuts. Larvae were collected from three orchards each of pome fruits, stone fruits and nut trees in a major fruit growing area of Switzerland (Valais) and from six further (mainly apple) orchards throughout this country. Nine microsatellite loci were used to investigate genetic differentiation and the amount of gene flow among the sampled populations. All the loci were shown to be polymorphic in all populations. The number of alleles ranged from five to 15 over nine loci for the 15 populations. Significant genetic differentiation was noted among the populations from apple, apricot and walnut in the Valais region. Furthermore, among the eight populations sampled from apple in different geographic regions throughout Switzerland, AMOVA and pairwise FST analysis revealed significant population genetic differentiation even between populations collected from orchards ≪10 km apart. These results indicate that a distinct prevailing characteristic, in the present case the sedentary behaviour of the moth, can shape population architecture.


2018 ◽  
Vol 63 (No. 3) ◽  
pp. 85-93 ◽  
Author(s):  
H. Vostrá-Vydrová ◽  
L. Vostrý ◽  
B. Hofmanová ◽  
N. Moravčíková ◽  
Z. Veselá ◽  
...  

In this study, we aimed to estimate and compare genetic diversity of two native draught horse breeds and check the possible influence of Noriker breed population on these native breeds. Genetic analyses of relationships and admixture were performed in two native endangered draught horse populations (Silesian Noriker and Czech-Moravian Belgian horses) and one open breed (Noriker). Totally 104 alleles from 13 microsatellite loci were detected in 1298 horses. The average number of alleles per locus was the highest in the Czech-Moravian Belgian horse (7.62) and the lowest in the Silesian Noriker (7.31), the differences were non-significant, whereas the observed and expected heterozygosities per breed ranged from 0.680 (Czech-Moravian Belgian) to 0.719 (Noriker) and from 0.678 (Silesian Noriker) to 0.714 (Noriker). The estimates of Wright’s F<sub>ST</sub> between each pair of breeds indicated a low level of genetic segregation. At the individual level across the analyzed population, formation of two clusters was observed with respect to historical breed development. Moreover, the membership probability outputs showed that the frequencies of alleles varied across the two main regions represented by the Czech-Moravian Belgian and other analyzed breeds. Our results indicated high genetic variability, low inbreeding, and low genetic differentiation, especially between Silesian Noriker and Noriker, which is caused by the high level of admixture. This high level of admixture was in accordance with geographical location, history, and breeding practices of the analyzed breeds. The Silesian Noriker and Noriker breeds seem to be the most genetically related and the decision to consider them as the same population is thus highly supported. The study provides data and information utilizable in the management of conservation programs planned to reduce inbreeding and to minimize loss of genetic variability.  


2009 ◽  
Vol 69 (2) ◽  
pp. 375-380 ◽  
Author(s):  
MF. Manica-Cattani ◽  
J. Zacaria ◽  
G. Pauletti ◽  
L. Atti-Serafini ◽  
S. Echeverrigaray

Twenty-seven accessions of Lippia alba Mill. collected in Rio Grande do Sul state, Brazil, were analysed by ISSR and RAPD markers to evaluate their genetic variability and relationships. Six ISSR primers and four RAPD primers generated 120 amplified fragments, most of which were polymorphics. The overall genetic variability among accessions was very high when compared with other plant species. The hierarchical analysis of molecular data (UPGMA) showed low relationship between accessions, and no grouping between accessions of the same chemotype. Canonical functions allowed identifying some variables related with the chemical characteristics of the essential oils. Both ISSR and RAPD markers were efficient to address the genetic diversity of L. alba, and may contribute to the conservation and breeding of this increasingly important aromatic and medicinal species.


2018 ◽  
Vol 127 ◽  
pp. 437-444 ◽  
Author(s):  
Fernando A. Cruzat ◽  
Christian Muñoz ◽  
Rodrigo R. González-Saldía ◽  
Agar Inostroza ◽  
Karl B. Andree

2011 ◽  
Vol 102 (3) ◽  
pp. 333-343 ◽  
Author(s):  
K.C. Albernaz ◽  
K.L. Silva-Brandão ◽  
P. Fresia ◽  
F.L. Cônsoli ◽  
C. Omoto

AbstractIntra- and inter-population genetic variability and the demographic history of Heliothis virescens (F.) populations were evaluated by using mtDNA markers (coxI, coxII and nad6) with samples from the major cotton- and soybean-producing regions in Brazil in the growing seasons 2007/08, 2008/09 and 2009/10. AMOVA indicated low and non-significant genetic structure, regardless of geographical scale, growing season or crop, with most of genetic variation occurring within populations. Clustering analyzes also indicated low genetic differentiation. The haplotype network obtained with combined datasets resulted in 35 haplotypes, with 28 exclusive occurrences, four of them sampled only from soybean fields. The minimum spanning network showed star-shaped structures typical of populations that underwent a recent demographic expansion. The recent expansion was supported by other demographic analyzes, such as the Bayesian skyline plot, the unimodal distribution of paired differences among mitochondrial sequences, and negative and significant values of neutrality tests for the Tajima's D and Fu's FS parameters. In addition, high values of haplotype diversity (Ĥ) and low values of nucleotide diversity (π), combined with a high number of low frequency haplotypes and values of θπ<θW, suggested a recent demographic expansion of H. virescens populations in Brazil. This demographic event could be responsible for the low genetic structure currently found; however, haplotypes present uniquely at the same geographic regions and from one specific host plant suggest an initial differentiation among H. virescens populations within Brazil.


2021 ◽  
Vol 13 (13) ◽  
pp. 2627
Author(s):  
Marks Melo Moura ◽  
Luiz Eduardo Soares de Oliveira ◽  
Carlos Roberto Sanquetta ◽  
Alexis Bastos ◽  
Midhun Mohan ◽  
...  

Precise assessments of forest species’ composition help analyze biodiversity patterns, estimate wood stocks, and improve carbon stock estimates. Therefore, the objective of this work was to evaluate the use of high-resolution images obtained from Unmanned Aerial Vehicle (UAV) for the identification of forest species in areas of forest regeneration in the Amazon. For this purpose, convolutional neural networks (CNN) were trained using the Keras–Tensorflow package with the faster_rcnn_inception_v2_pets model. Samples of six forest species were used to train CNN. From these, attempts were made with the number of thresholds, which is the cutoff value of the function; any value below this output is considered 0, and values above are treated as an output 1; that is, values above the value stipulated in the Threshold are considered as identified species. The results showed that the reduction in the threshold decreases the accuracy of identification, as well as the overlap of the polygons of species identification. However, in comparison with the data collected in the field, it was observed that there exists a high correlation between the trees identified by the CNN and those observed in the plots. The statistical metrics used to validate the classification results showed that CNN are able to identify species with accuracy above 90%. Based on our results, which demonstrate good accuracy and precision in the identification of species, we conclude that convolutional neural networks are an effective tool in classifying objects from UAV images.


2021 ◽  
Author(s):  
Julissa Rojas-Sandoval ◽  
Pedro Acevedo-Rodríguez

Abstract Genetics: The chromosome number reported for C. dactylon varies from 2n = 18 to 2n = 36 with diploid and polyploid populations (Cook et al., 2005). Ramakrishan and Singh (1966) and Sarandon (1991) have found differences in total biomass and biomass partition according to the origin of the population. Sarandon (1991) points out that characters are highly heritable, which means that high genetic variability for biomass production and variable architecture allows an ample base for selection, which in most cases is induced by herbicides, mechanical control or forage production. Reproductive Biology: C. dactylon is wind-pollinated and generally self-incompatible, suffering from inbreeding depression when genotypes are self-pollinated. Quantitative traits such as seed yield and forage yield can be dramatically negatively affected by inbreeding depression (Cook et al., 2005). In diploid populations, caryopses are formed after zygote formation. In polyploids, which are sterile, caryopses may be apomictic. Physiology: This C4 plant (Kissmann, 1991) has high rates of accumulation under adequate irradiance, water and nutrient supply and may consume 75 kg of N, 20 kg of P and more than 1,500,000 litres of water for 5000 kg/ha of biomass dry matter (Fernandez, 1991). In the south of Santa Fe province, Argentina, a maximum biomass of 8000 kg/ha may be generated under a summer crop of maize or sunflower with >75% located in the first 10 cm of the soil profile (Lombardo, 1973), whereas in Balcarce (Argentina) about 5000 kg/ha is commonly found in maize or sunflower stubble. Phenology: A photoperiod of 13 hours induces flowering. Low night temperatures coupled with high diurnal temperatures induces blooming (Nir and Koller, 1976). A reduction in irradiance drastically decreases inflorescence production (Moreira, 1975). In North America, annual plants reproduce during spring and perennial plants reproduce all year long (USDA-NRCS, 2014). Longevity: C. dactylon grows as both an annual and perennial grass. The annual growth-form becomes dormant and turns brown when nighttime temperatures fall below freezing or average daytime temperatures are below 10°C (Cook et al., 2005). Activity Patterns: Seeds may be the route of invasion in weed-free fields through the faeces of cows (Rodriguez, personal communication). Rhizome biomass exhibits an annual cyclic pattern and, as with any perennial weed, low temperatures reduce biomass and viability is lost as a consequence of the consumption of materials due to respiration and maintenance. The digestibility of stocked material is severely decreased, implying a loss in forage quality (Vaz Martins, 1989). This is a character that has largely improved in cultivated varieties. Each node has a physiological self-governing structure in relation to the apex, but is highly dependent on substances from other plant parts. The mother plant determines the runner growth pattern on the soil surface according to the sugar-gibberellin balance (Montaldi 1970). Node disconnection may be caused by natural decay and cultivation and produces damage in the breakdown zone and changes in hormone and nutrient relationships. It is widely demonstrated that rhizome or runner fragmentation induces the activation of buds. The proportion of activated buds increases as the number of buds per segment decreases (Moreira, 1980; Kigel and Koller, 1985; Fernandez and Bedmar, 1992). The cultivation method is mainly responsible for vegetative propagation fragmentation. The higher the cultivation intensity, the smaller the segments produced (Kigel and Koller, 1985). Population Size and Structure This weed produces an enormous number of small seeds (0.25-0.30 mg), the viability and dormancy of which are highly variable according to genotype and the conditions when formed. The seed is important because it confers high genetic variability on the population. Perez et al. (1995) recorded a very low germination rate. Uygur et al. (1985) obtained up to 15% germination at constant temperatures of 35-40°C, and 50% at temperatures alternating between 20 and 30°C. Moreira (1975) obtained up to 80% germination with the help of nitrate, chilling and alternating temperatures, and Elias (1986) recorded up to 96% germination from heavier samples of seed. Seeds remain viable in the soil for at least 2 years (Caixinhas et al., 1988). As a rule, cultivars have relatively high viability. Osmo-conditioning of Bermuda grass seeds with PEG followed by immediate sowing improved seed germination and seedling growth under saline conditions (Al-Humaid 2002). The probability of emergence and successful establishment of C. dactylon decreases with the depth of the fragment, but increases with the weight of the node and internode (Perez et al., 1998). Growth from plants originated from a runner may exhibit a different biomass partition than that from plants originated from a rhizome (Fernandez, 1986). From sprouting onwards, weed growth is controlled mainly by temperature (optimum 25-30°C) and radiation, but also by humidity and soil fertility. The efficiency of carbohydrate reserve usage during sprout growth is highly dependent on temperature and the type of vegetative structure; it is maximum at 20°C and is higher for rhizomes than for stolons (Satorre et al., 1996). Runners and rhizome growth begins 30 days after growth but only if soil temperature is >15°C. Rates of 15 g/g/day have been recorded in Argentina (Lescano de Ríos, 1982).


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