scholarly journals Identification of minimum descriptors for characterization of Capsicum spp. germplasm

2013 ◽  
Vol 31 (2) ◽  
pp. 190-202 ◽  
Author(s):  
Waldir C Junior e Silva ◽  
Sabrina Isabel C de Carvalho ◽  
João B Duarte
Keyword(s):  
Qualitative Data ◽  
Multiple Correspondence Analysis ◽  
Statistical Treatment ◽  
Stem Length ◽  
Fruit Traits ◽  
Morphological Descriptors ◽  
Mature Fruit ◽  
Capsicum Spp ◽  
Cultivated Species

This study was proposed to select minimum descriptors to the characterization of accessions of Capsicum spp. from Embrapa Hortaliças germplasm bank, which are characterized mainly by qualitative data. From this collection, 893 (420 C. annuum, 106 C. baccatum, 307 C. chinense and 60 C. frutescens) were considered because they were completely characterized by 56 morphological descriptors. The statistical treatment was performed by factorial multiple correspondence analysis, combined with estimation of matrices of genetic dissimilarity among accessions for multicategoric data. Lists of minimum descriptors were proposed for the whole collection and for the subcollections related to the four cultivated species. Around thirty minimum descriptors were selected for each subcollection, maintaining a minimum of 0.90 for the correlation between the dissimilarity matrices that consider all the descriptors or only the selected minimum descriptors. These proposed lists allow a reduction of around 50% in the number of initial descriptors. The filament colour, mature fruit colour, number of locules, fruit position, origin, pungency, fruit surface, stem length, plant height and fruit length were selected as minimum descriptors, both to the whole collection and their subcollections. Most of these descriptors are related to the fruit traits of sweet and chilli peppers, which are important for genetic breeding of Capsicum because are related to storage, processing, marketing and consumption of commercial derived products.

scholarly journals Phenotypic Characterization of Fine-Aroma Cocoa from Northeastern Peru

2021 ◽  
Vol 2021 ◽  
pp. 1-12
Author(s):  
Manuel Oliva-Cruz ◽  
Malluri Goñas ◽  
Ligia M. García ◽  
Raúl Rabanal-Oyarse ◽  
Cástula Alvarado-Chuqui ◽  
...  
Keyword(s):  
Sea Level ◽  
Multiple Correspondence Analysis ◽  
Phenotypic Characterization ◽  
Morphological Descriptors ◽  
Cocoa Beans ◽  
Fruit Wall ◽  
Low Levels ◽  
Seed Characteristics ◽  
Theobroma Cacao L

The phenotypic characterization of cacao (Theobroma cacao L.) plays an important role in the generation of information for the conservation of cacao germplasm. The objective of this study is to characterize phenotypically 146 ecotypes of fine-aroma native cacao (FFNC) from northeastern Peru that were collected from 280 to 1265 metres above sea level. Morphological descriptors of fruits and seeds, sensory characteristics, and productivity descriptors were used. The data obtained were analyzed using descriptive statistics with pie charts, distribution histograms, and multiple correspondence analysis. The results showed that 76.7% of the cocoa ecotypes had green immature fruits, 73% showed slight roughness on the surface of the fruit, 54% showed an intermediate thickness of the fruit wall, and 90% had the appearance of pairs of equidistant ridges. Regarding seed characteristics, 71% showed purplish cotyledons, with a high presence of floral and fruity notes and low levels of bitterness and astringency. Likewise, 52% of the fruits and 64% of the seeds were long. More importantly, cocoa beans needed to produce between 14 and 16 pods to obtain one kilogram of dry cocoa, which reflects a good level of productivity. Finally, there was a positive relationship between elevation levels and the presence of fine-flavoured native cocoa, i.e., the greatest diversity of native cocoa with floral and fruity notes was found above 501 metres above sea level.

scholarly journals Global range expansion history of pepper (Capsicum spp.) revealed by over 10,000 genebank accessions

2021 ◽  
Vol 118 (34) ◽  
pp. e2104315118
Author(s):  
Pasquale Tripodi ◽  
Mark Timothy Rabanus-Wallace ◽  
Lorenzo Barchi ◽  
Sandip Kale ◽  
Salvatore Esposito ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genotyping By Sequencing ◽  
Focal Region ◽  
Nucleotide Polymorphisms ◽  
Trade Routes ◽  
Genebank Management ◽  
Capsicum Spp ◽  
History Of ◽  
Cultural Commodity

Genebanks collect and preserve vast collections of plants and detailed passport information, with the aim of preserving genetic diversity for conservation and breeding. Genetic characterization of such collections has the potential to elucidate the genetic histories of important crops, use marker–trait associations to identify loci controlling traits of interest, search for loci undergoing selection, and contribute to genebank management by identifying taxonomic misassignments and duplicates. We conducted a genomic scan with genotyping by sequencing (GBS) derived single nucleotide polymorphisms (SNPs) of 10,038 pepper (Capsicum spp.) accessions from worldwide genebanks and investigated the recent history of this iconic staple. Genomic data detected up to 1,618 duplicate accessions within and between genebanks and showed that taxonomic ambiguity and misclassification often involve interspecific hybrids that are difficult to classify morphologically. We deeply interrogated the genetic diversity of the commonly consumed Capsicum annuum to investigate its history, finding that the kinds of peppers collected in broad regions across the globe overlap considerably. The method ReMIXTURE—using genetic data to quantify the similarity between the complement of peppers from a focal region and those from other regions—was developed to supplement traditional population genetic analyses. The results reflect a vision of pepper as a highly desirable and tradable cultural commodity, spreading rapidly throughout the globe along major maritime and terrestrial trade routes. Marker associations and possible selective sweeps affecting traits such as pungency were observed, and these traits were shown to be distributed nonuniformly across the globe, suggesting that human preferences exerted a primary influence over domesticated pepper genetic structure.

scholarly journals CARACTERIZAÇÃO DE GENÓTIPOS DE CAPSICUM SPP. POR TÉCNICAS MULTIVARIADAS NO SUL DO PIAUÍ / CHARACTERIZATION OF CAPSICUM SPP. BY MULTIVARIATE TECHNIQUES IN SOUTHERN PIAUÍ

2020 ◽  
Vol 6 (12) ◽  
pp. 97371-97385
Author(s):  
Lucas da Silva Costa ◽  
Laís dos Santos Neri da Silva ◽  
Camila Maria Ribeiro da Silva Filha ◽  
Jéssica Fernanda Ferreira dos Santos ◽  
Raimundo Nonato Oliveira Silva
Keyword(s):  
Multivariate Techniques ◽  
Capsicum Spp

scholarly journals Morphophenological characterization of ornamental ginger and selection for landscape use

2018 ◽  
Vol 24 (3) ◽  
pp. 255-260
Author(s):  
Carlos Eduardo Ferreira de Castro ◽  
Ana Cecilia Ribeiro Castro ◽  
Charleston Gonçalves ◽  
Vivian Loges
Keyword(s):  
Phenotypic Variability ◽  
Stem Growth ◽  
Stem Length ◽  
Leaf Color ◽  
Flowering Season ◽  
Flower Stem ◽  
Number Of Leaves ◽  
Selection For ◽  
Inflorescence Length

Many species of Zingiber have great ornamental potential, due to durability and exotic appearance of the inflorescences. Despite its large phenotypic variability, they are scarcely exploited or not yet exploited regarding the ornamental potential. To conserve potential ornamental genotypes, and subsidize breeding program, the Agronomic Institute (IAC) maintain a Germoplasm Collection of Ornamental Zingiberales with promising accessions, including Zingiber. The aim was the morphophenological characterization of ten Zingiber accessions and the indication for landscape purposes. A large variation was observed to the evaluated characters: Clump height (CH); Inflorescence visualization (IV); Clump area (CA); Clump density (CD); Leaf stem Firmness (LSF); Number of leaf stems per clump (NLSC); Number of leaves per stem (NLS); Leaf color (LCol); Evergreen tendency (ET); Flower stem growth (FSG); Flower stem length (FSLe); Flower stem diameter (FSD); Flower stem per clump (FSC); Color sensorial perception (CSP); Flower stem weight (FSW); Inflorescence length (IL); Inflorescence diameter (ID); Bracts aspects (BAs); and Flowering season (FSe). The accessions very suitable and with the best performance to use for landscape purpose were Z. spectabile, IAC Anchieta (Z. spectabile), Z. newmanii.

scholarly journals VARIABILIDADE GENÉTICA UTILIZANDO DESCRITORES MORFOLÓGICOS PARA ACESSOS DE Capsicum spp. PARA FINS ORNAMENTAIS

Nativa ◽  
2019 ◽  
Vol 7 (6) ◽  
pp. 675
Author(s):  
Petterson Baptista da Luz ◽  
Alessandro Aparecido Brito dos Santos ◽  
Valdete Campos Ambrosio
Keyword(s):  
Genetic Variability ◽  
Ornamental Plants ◽  
Growth Potential ◽  
Breeding Programs ◽  
Canonical Correlations ◽  
Plant Parts ◽  
Potted Plants ◽  
Capsicum Spp ◽  
Biometric Templates

O mercado de pimentas para fins ornamentais é um setor recém explorado, mas com grande potencial de crescimento no ramo de floricultura e paisagismo. As pimenteiras que possuem folhagem variegada, porte baixo, frutos com coloração variada em seus diferentes estádios de maturação, contrastando com as folhagens, já são utilizadas como plantas ornamentais, cultivadas e comercializadas em vasos. O presente trabalho teve como objetivo avaliar a variabilidade genética visando o potencial ornamental de acessos de Capsicum spp. através de modelos biométricos. Foram utilizados 55 acessos de Capsicum spp, e a caracterização morfoagronômica dos acessos foi realizada avaliando diferentes partes da planta. O terceiro par de correlações canônicas, com correlação de 0,51, associa plantas com área do dossel compacto-densa, com menor comprimento e largura de dossel e de pequeno porte, associado com folhagens estreitas e de pecíolo grande. Esta associação é vantajosa para ornamentação. Ficou evidenciada a presença de variabilidade genética na população, o que é bastante favorável ao melhoramento na medida em que a heterogeneidade genética possibilita a obtenção de ganhos por meio de seleção.Palavras-chave: pimenta; modelos biométricos; correlações canônicas; análise de trilha. GENETIC VARIABILITY FOCUSED ON ORNAMENTAL POTENTIAL OF A Capsicum spp. ACCESSION ABSTRACT: Pepper market for ornamental purposes is recently exploited; however, it has a great growth potential in floriculture and landscaping. Pepper with variegated foliage, small size, and varied fruit coloration at different ripening stages contrasting with leaves have already been used as ornamental plants cultivated and purchased as potted plants. This study aimed to evaluate genetic variability of Capsicum spp. focusing on its ornamental potential by means of biometric templates. Fifty-five Capsicum spp. accessions were used and a morpho-agronomic characterization of the accessions were performed by evaluating different plant parts. The third canonical correlations are 0.51 and it associates compact-dense, small, shorter length and width canopy plants with narrow foliage and large petiole, which is advantageous for ornamentation. Genetic variation was evidenced in the population being very favorable for plant breeding programs once genetic heterogeneity enables obtaining gains through selections.Keywords: pepper; biometric templates; canonic correlations; trail analysis.

scholarly journals From Academia to Start-up: A Case Study with Implications for Engineering Education

2014 ◽  
Vol 4 (1) ◽  
pp. 24
Author(s):  
Bill Williams ◽  
José Figueiredo
Keyword(s):  
Knowledge Production ◽  
Critical Analysis ◽  
Qualitative Data ◽  
Engineering Students ◽  
Role Play ◽  
Engineering Practice ◽  
Start Up ◽  
Mode 2

This study uses the characterization of contrasting modes of knowledge production to follow the activity of a group of engineers who migrated from an academic environment to a successful start-up firm. Qualitative data from interviews of two key members of the team were used to characterize their activities in the two settings. The authors relate the engineering practice described in the interviews to the Gibbons Mode 1 and Mode 2 knowledge production phases and note the importance of a phase change in the transition between the two modes. The resultant case-study contributes material for use in role-play activity with engineering students to help develop interdisciplinary skills. The study also presents a critical analysis to evaluate the merits of the Mode 1 and Mode 2 framework for analysis of engineering practice at the level of the firm.

scholarly journals Germplasm characterization of three jabuticaba tree species

2011 ◽  
Vol 33 (3) ◽  
pp. 839-847 ◽  
Author(s):  
Moeses Andrigo Danner ◽  
Idemir Citadin ◽  
Simone Aparecida Zolet Sasso ◽  
Marcos Robson Sachet ◽  
Sérgio Miguel Mazaro
Keyword(s):  
Tree Species ◽  
Fruit Growth ◽  
Germplasm Characterization ◽  
Fruit Traits ◽  
Fruit Skin ◽  
Pharmaceutical Industries ◽  
Potential Use

The purpose of this study was to characterize cultivated genotypes of three jabuticaba species (Plinia cauliflora, P. trunciflora, and P. jaboticaba). Phenology and fruit growth, as well as leaf, flower and fruit traits were evaluated. Variability in all traits was observed among genotypes of the three jabuticaba species. The trait peduncle size is indicated for differentiation of the three species under study. The leaf and fruit sizes of the genotypes P. trunciflora 3, P. trunciflora 4, P. trunciflora 5 and P. jaboticaba 1 differ from those described in the literature for these species, indicating the formation of ecotypes. Jabuticaba fruit skin contains high anthocyanin and flavonoid concentrations, with potential use in food and pharmaceutical industries.

scholarly journals Characterization and Comparative Analysis of RWP-RK Proteins from Arachis duranensis, Arachis ipaensis, and Arachis hypogaea

2020 ◽  
Vol 2020 ◽  
pp. 1-19
Author(s):  
Chenyang Liu ◽  
Dongliang Yuan ◽  
Tong Liu ◽  
Mengge Xing ◽  
Wenying Xu ◽  
...  
Keyword(s):  
Arachis Hypogaea ◽  
Expression Patterns ◽  
Orthologous Gene ◽  
Evolutionary Analysis ◽  
Gene Pairs ◽  
Cultivated Species ◽  
Arachis Duranensis ◽  
Gene Structures ◽  
Wild Peanut

RWP-RK proteins are important factors involved in nitrate response and gametophyte development in plants, and the functions of RWP-RK proteins have been analyzed in many species. However, the characterization of peanut RWP-RK proteins is limited. In this study, we identified 16, 19, and 32 RWP-RK members from Arachis duranensis, Arachis ipaensis, and Arachis hypogaea, respectively, and investigated their evolution relationships. The RWP-RK proteins were classified into two groups, RWP-RK domain proteins and NODULE-INCEPTION-like proteins. Chromosomal distributions, gene structures, and conserved motifs of RWP-RK genes were compared among wild and cultivated peanuts. In addition, we identified 12 orthologous gene pairs from the two wild peanut species, 13 from A. duranensis and A. hypogaea, and 13 from A. ipaensis and A. hypogaea. One, one, and seventeen duplicated gene pairs were identified within the A. duranensis, A. ipaensis, and A. hypogaea genomes, respectively. Moreover, different numbers of cis-acting elements in the RWP-RK promoters were found in wild and cultivated species (87 in A. duranensis, 89 in A. ipaensis, and 92 in A. hypogaea), and as a result, many RWP-RK genes showed distinct expression patterns in different tissues. Our study will provide useful information for further functional and evolutionary analysis of the RWP-RK genes.

scholarly journals STYLE AND SUBSTANCE: A QUALITATIVE CHARACTERIZATION OF DEMENTIA CAREGIVING MANAGEMENT STYLES

2019 ◽  
Vol 3 (Supplement_1) ◽  
pp. S594-S595
Author(s):  
Amanda N Leggett ◽  
Benjamin Bugajski ◽  
Breanna Webster ◽  
Brianna Broderick ◽  
Daphne Watkins ◽  
...  
Keyword(s):  
Lived Experience ◽  
Family Caregivers ◽  
Care Management ◽  
Qualitative Data ◽  
Management Style ◽  
Management Styles ◽  
Caregiver Interventions ◽  
Future Direction ◽  
Primary Family

Abstract Caring for a person living with dementia (PLWD) can take a physical and emotional toll, but understudied is the process of how family caregivers actually provide care (caregiver management styles). We interviewed 100 primary family caregivers regarding management of a recently experienced care challenge and values held which might impact care management decisions. Watkins’ (2017) rigorous and accelerated data reduction (RADaR) technique was used to analyze qualitative data through open/focused coding, determining commonalities of style components/themes, and finally defining caregiving management styles. Style for a given caregiver emerged from enacted care strategies, caregiver’s internal stances which informed their use of strategies, and broader engagement (or lack thereof) with the PLWD’s lived experience/reality. Styles emerging from the analysis will be described including the direct, rigid “Just do it” style, and the flexible, empathic “Teamwork” style. Individualizing caregiver interventions and supports based on caregiver management style is an important future direction.

scholarly journals Combinations of distance measures and clustering algorithms in pepper germplasm characterization

2019 ◽  
Vol 37 (2) ◽  
pp. 172-179 ◽  
Author(s):  
Gisely Paula Gomes ◽  
Viviane Yumi Baba ◽  
Odair P dos Santos ◽  
Cláudia P Sudré ◽  
Cintia dos S Bento ◽  
...  
Keyword(s):  
Qualitative Data ◽  
Nearest Neighbor ◽  
Pearson Correlation ◽  
Clustering Algorithms ◽  
Distance Measures ◽  
Absolute Difference ◽  
Joint Analysis ◽  
Germplasm Characterization ◽  
Cophenetic Correlation ◽  
Capsicum Spp

ABSTRACT Characterization and evaluation of genotypes conserved in the germplasm banks have become of great importance due to gradual loss of genetic variability and search for more adapted and productive genotypes. This can be obtained through several ways, generating quantitative and qualitative data. Joint analysis of those variables may be considered a strategy for an accurate germplasm characterization. In this study we aimed to evaluate different clustering techniques for characterization and evaluation of Capsicum spp. accessions using combinations of specific measures for quantitative and qualitative variables. A collection of 56 Capsicum spp. accessions was characterized based on 25 morphoagronomic descriptors. Six quantitative distances were used [A1) average of the range-standardized absolute difference (Gower), A2) Pearson correlation, A3) Kulczynski, A4) Canberra, A5) Bray-Curtis, and A6) Morisita] combined with distance for qualitative data [Simple Coincidence (B1)]. Clustering analyses were performed using agglomerative hierarchical methods (Ward, the nearest neighbor, the farthest neighbor, UPGMA and WPGMA). All combined distances were highly correlated. UPGMA clustering was the most efficient through cophenetic correlation and 2-norm analyses, showing a concordance between the two methods. Six clusters were considered an ideal number by UPGMA clustering, in which Gower distance showed a better adjustment for clustering. Most combined distances using UPGMA clustering allowed the separation of the accessions in relation to species, using both quantitative and qualitative data, which could be an alternative for simultaneous joint analysis, aiming to compare different clusters.

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