scholarly journals Bacterial Biodiversity, Cold Adaption and Biotechnological Importance of Bacteria Occurring in Antarctica

Author(s):  
S. Shivaji ◽  
G. S. N. Reddy ◽  
M. K. Chattopadhyay
2021 ◽  
Vol 22 (2) ◽  
pp. 500
Author(s):  
Marina Ferrer ◽  
Mònica Aguilera ◽  
Vicente Martinez

Rifaximin is a broad-spectrum antibiotic that ameliorates symptomatology in inflammatory/functional gastrointestinal disorders. We assessed changes in gut commensal microbiota (GCM) and Toll-like receptors (TLRs) associated to rifaximin treatment in mice. Adult C57BL/6NCrl mice were treated (7/14 days) with rifaximin (50/150 mg/mouse/day, PO). Luminal and wall-adhered ceco-colonic GCM were characterized by fluorescent in situ hybridization (FISH) and microbial profiles determined by terminal restriction fragment length polymorphism (T-RFLP). Colonic expression of TLR2/3/4/5/7 and immune-related markers was assessed (RT-qPCR). Regardless the period of treatment or the dose, rifaximin did not alter total bacterial counts or bacterial biodiversity. Only a modest increase in Bacteroides spp. (150 mg/1-week treatment) was detected. In control conditions, only Clostridium spp. and Bifidobacterium spp. were found attached to the colonic epithelium. Rifaximin showed a tendency to favour their adherence after a 1-week, but not 2-week, treatment period. Minor up-regulation in TLRs expression was observed. Only the 50 mg dose for 1-week led to a significant increase (by 3-fold) in TLR-4 expression. No changes in the expression of immune-related markers were observed. Rifaximin, although its antibacterial properties, induces minor changes in luminal and wall-adhered GCM in healthy mice. Moreover, no modulation of TLRs or local immune systems was observed. These findings, in normal conditions, do not rule out a modulatory role of rifaximin in inflammatory and or dysbiotic states of the gut.


Marine Drugs ◽  
2021 ◽  
Vol 19 (1) ◽  
pp. 43
Author(s):  
Marco Mangiagalli ◽  
Marina Lotti

β-galactosidases (EC 3.2.1.23) catalyze the hydrolysis of β-galactosidic bonds in oligosaccharides and, under certain conditions, transfer a sugar moiety from a glycosyl donor to an acceptor. Cold-active β-galactosidases are identified in microorganisms endemic to permanently low-temperature environments. While mesophilic β-galactosidases are broadly studied and employed for biotechnological purposes, the cold-active enzymes are still scarcely explored, although they may prove very useful in biotechnological processes at low temperature. This review covers several issues related to cold-active β-galactosidases, including their classification, structure and molecular mechanisms of cold adaptation. Moreover, their applications are discussed, focusing on the production of lactose-free dairy products as well as on the valorization of cheese whey and the synthesis of glycosyl building blocks for the food, cosmetic and pharmaceutical industries.


Extremophiles ◽  
2010 ◽  
Vol 14 (4) ◽  
pp. 377-395 ◽  
Author(s):  
Suman Pradhan ◽  
T. N. R. Srinivas ◽  
Pavan Kumar Pindi ◽  
K. Hara Kishore ◽  
Z. Begum ◽  
...  

2003 ◽  
Vol 83 (Special Issue) ◽  
pp. 303-309 ◽  
Author(s):  
E. Topp

Bacteria in soil are very diverse, very numerous, and functionally important, and have historically been an important object of research by Canadian microbiologists. Only a small fraction of bacteria in soils are amenable to culturing in the laboratory, limiting the ability to study these organisms. Canadian scientists have contributed to the development and implementation of both nucleic acidbased and chemical biomarker-based methods now widely used for assessing soil microbial biodiversity without the need for isolation and cultivation. Pesticide degradation, and the cycling of nitrogen in soils are used here to illustrate the significance of bacterial biodiversity to soil functions relevant to human and environmental health, and crop production . There remains much to be discovered about the genetic and functional biodiversity of soil bacteria, and much to be gained from this knowledge. A number of recommendations are made for future research in soil bacteriology. Key words: Soil quality, bacteria, microbial biodiversity, pesticide biodegradation, nitrogen cycling.


2011 ◽  
Vol 54 (5) ◽  
pp. 1035-1041 ◽  
Author(s):  
Aline Viancelli ◽  
Airton Kunz ◽  
Paulo Augusto Esteves ◽  
Fernando Viçosa Bauermann ◽  
Kenji Furukawa ◽  
...  

2013 ◽  
Vol 2013 ◽  
pp. 1-11 ◽  
Author(s):  
Okba Selama ◽  
Phillip James ◽  
Farida Nateche ◽  
Elizabeth M. H. Wellington ◽  
Hocine Hacène

Databases are an essential tool and resource within the field of bioinformatics. The primary aim of this study was to generate an overview of global bacterial biodiversity and biogeography using available data from the two largest public online databases, NCBI Nucleotide and GBIF. The secondary aim was to highlight the contribution each geographic area has to each database. The basis for data analysis of this study was the metadata provided by both databases, mainly, the taxonomy and the geographical area origin of isolation of the microorganism (record). These were directly obtained from GBIF through the online interface, whileE-utilitiesandPythonwere used in combination with a programmatic web service access to obtain data from the NCBI Nucleotide Database. Results indicate that the American continent, and more specifically the USA, is the top contributor, while Africa and Antarctica are less well represented. This highlights the imbalance of exploration within these areas rather than any reduction in biodiversity. This study describes a novel approach to generating global scale patterns of bacterial biodiversity and biogeography and indicates that theProteobacteriaare the most abundant and widely distributed phylum within both databases.


Author(s):  
Sylvie Manguin ◽  
Chung Thuy Ngo ◽  
Krajana Tainchum ◽  
Waraporn Juntarajumnong ◽  
Theeraphap Chareonviriyaphap ◽  
...  

Agriculture ◽  
2020 ◽  
Vol 10 (3) ◽  
pp. 79 ◽  
Author(s):  
Mikhail Y. Syromyatnikov ◽  
Mariya M. Isuwa ◽  
Olga V. Savinkova ◽  
Mariya I. Derevshchikova ◽  
Vasily N. Popov

In recent decades an increase in the use of pesticides to protect plants from pests, diseases and weeds has been observed. There are many studies on the effects of various pesticides on non-target organisms. This review aims to analyze and summarize published scientific data on the effects of pesticides on the animal microbiome. Pesticides can affect various parameters of the animal microbiome, such as the taxonomic composition of bacteria, bacterial biodiversity, and bacterial ratios and modify the microbiome of various organisms from insects to mammals. Pesticide induced changes in the microbiome reducing the animal’s immunity. The negative effects of pesticides could pose a global problem for pollinators. Another possible negative effect of pesticides is the impact of pesticides on the intestinal microbiota of bumblebees and bees that increase the body’s sensitivity to pathogenic microflora, which leads to the death of insects. In addition, pesticides can affect vitality, mating success and characteristics of offspring. The review considers methods for correcting of bee microbiome.


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