scholarly journals First detection and characterisation of porcine hemagglutinating encephalomyelitis virus in the Czech Republic

2019 ◽  
Vol 64 (No. 02) ◽  
pp. 60-66
Author(s):  
R Moutelikova ◽  
J Prodelalova
Keyword(s):  
Czech Republic ◽  
Amino Acid ◽  
Amino Acid Sequence ◽  
Phylogenetic Analyses ◽  
Economic Losses ◽  
The Czech Republic ◽  
Nucleocapsid Gene ◽  
Nasal Swabs ◽  
Encephalomyelitis Virus ◽  
Porcine Hemagglutinating Encephalomyelitis Virus

Porcine hemagglutinating encephalomyelitis virus (PHEV) is a highly neurovirulent coronavirus that invades the central nervous system in piglets. The incidence of PHEV among pigs in many countries is rising, and the economic losses to the pig industry may be significant. Serological studies suggest that PHEV is spread worldwide. However, no surveillance has been carried out in the Czech Republic. In this study, eight pig farms were screened for the presence of members of the Coronaviridae family with the use of reverse transcription PCR. A collection of 123 faecal samples and 151 nasal swabs from domestic pigs were analysed. In PHEV-positive samples, almost the complete coding sequence of the nucleocapsid gene was amplified and the acquired sequences were compared to those of geographically dispersed PHEV strains; phylogenetic analyses were also performed. PHEV was present in 7.9% of nasal swabs taken from different age categories of pigs. No other swine coronaviruses were detected. The amino acid sequence of the Czech PHEV strains showed 95.8–98.1% similarity to other PHEV reference strains in GenBank. PHEV strains collected from animals on the same farm were identical; however, strains from different farms have only exhibited only 96.7–98.7% amino acid sequence identity. Our study demonstrates the presence of PHEV in pigs in the Czech Republic. The Czech PHEV strains were evolutionarily closest to the Belgium strain VW572.

Single nucleotide polymorphism scanning and expression analysis of ACSL1 from different duck breeds

2021 ◽  
Author(s):  
Qianqian Song ◽  
Zhixiu Wang ◽  
Hongliang Zhang ◽  
Xiangxiang Li ◽  
Yang Zhang ◽  
...  
Keyword(s):  
Amino Acid ◽  
Amino Acid Sequence ◽  
Protein Expression ◽  
Meat Quality ◽  
Liver Tissue ◽  
Phylogenetic Analyses ◽  
Abdominal Fat ◽  
Breast Muscle ◽  
Pekin Duck ◽  
Lipid Deposition

Accumulating studies have indicated that the long-chain fatty acyl-CoA1 (ACSL1) gene is related to fat deposition and meat quality in mammals. However, few studies have investigated the relationship between ACSL1 and lipid deposition in ducks. To examine this, we assessed the physicochemical property, homologous alignment and phylogenetic analyses of the ACSL1 amino acid sequence using bioinformatics tools. The analysis indicated that the ACSL1 amino acid sequence varies in animals, and the duck ACSL1 protein is most closely related to that of chicken. Two SNP sites were identified at 1749 and 1905 bp of the coding region of ACSL1 by sequencing. Quantitative real-time PCR and western blotting were used to measure mRNA and protein levels in abdominal fat, breast muscle and liver tissue of Pekin duck (BD) and Cherry Valley duck (CD). mRNA and protein expression were significantly higher in BD than in CD in abdominal fat and liver tissue (P < 0.05). In breast muscle, the mRNA level of ACSL1 was also significantly higher in BD than in CD (P < 0.05), and protein expression in BD tended to be higher than that of CD. These results suggest that ACSL1 may contribute to lipid deposition and meat quality in ducks.

scholarly journals Pyrenochaetopsis kuksensis (Pyrenochaetopsidaceae), a new species associated with an ornamental boxwood in the Czech Republic

Phytotaxa ◽  
2021 ◽  
Vol 498 (3) ◽  
pp. 177-185
Author(s):  
MILAN ŠPETÍK ◽  
AKILA BERRAF-TEBBAL ◽  
ROBERT POKLUDA ◽  
ALEŠ EICHMEIER
Keyword(s):  
Czech Republic ◽  
New Species ◽  
Phylogenetic Relationships ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
New Taxon ◽  
The Czech Republic ◽  
Buxus Sempervirens ◽  
Fungal Microbiome ◽  
A New Species

During the investigation of fungal microbiome associated with boxwood in the Czech Republic, samples from Buxus sempervirens L. (Buxaceae) plants were collected and used for isolation. Two fungal strains were proposed as a new species Pyrenochaetopsis kuksensis based on morphology as well as phylogenetic analyses of ITS, LSU, rpb2, and tub2 sequence data. Detailed descriptions and phylogenetic relationships of the new taxon are provided.

scholarly journals Methicillin-resistant Staphylococcus aureus in veterinary professionals in 2017 in the Czech Republic

2020 ◽  
Vol 16 (1) ◽  
Author(s):  
Katerina Neradova ◽  
Vladislav Jakubu ◽  
Katarina Pomorska ◽  
Helena Zemlickova
Keyword(s):  
Staphylococcus Aureus ◽  
Czech Republic ◽  
Nasal Carriage ◽  
The Czech Republic ◽  
Methicillin Resistant ◽  
Nasal Swabs ◽  
Mrsa Strains ◽  
Healthcare Associated ◽  
Mrsa Colonization ◽  
Animal Strains

Abstract Background Cases of colonization or infection caused by Methicillin-resistant Staphylococcus aureus (MRSA) are frequently reported in people who work with animals, including veterinary personnel. The aim of this study was to determine the prevalence of MRSA colonization among veterinary professionals. A total of 134 nasal swabs from healthy attendees of a veterinary conference held in the Czech Republic were tested for presence of MRSA. The stains were further genotypically and phenotypically characterized. Results Nine isolated MRSA strains were characterized with sequence type (ST), spa type (t) and Staphylococcal Cassette Chromosome mec type. Five different genotypes were described, including ST398-t011-IV (n = 5), ST398-t2330-IV (n = 1), ST398-t034-V (n = 1), ST225-t003-II (n = 1) and ST4894-t011-IV (n = 1). The carriage of the animal MRSA strain was confirmed in 8 cases, characteristics of one strain corresponded to the possible nosocomial origin. Among animal strains were described three spa types (t011, t034, t2330) belonging into one dominating clonal complex spa-CC11. Conclusion According to our results, the prevalence of nasal carriage of MRSA in veterinary personnel is 6.72%. Although we described an increase compared to the results of previous study (year 2008), the prevalence in the Czech Republic is still remaining lower than reported from neighboring countries. Our results also indicate that healthcare - associated MRSA strains are still not spread among animals.

scholarly journals Predictability of flood events in view of current meteorology and hydrology in the conditions of the Czech Republic

2008 ◽  
Vol 2 (No. 4) ◽  
pp. 156-168 ◽  
Author(s):  
L. Březková ◽  
M. Šálek ◽  
E. Soukalová ◽  
M. Starý
Keyword(s):  
Czech Republic ◽  
Prediction Models ◽  
Weather Prediction ◽  
Warning System ◽  
Economic Losses ◽  
Hydrological Models ◽  
Flood Events ◽  
Common Error ◽  
The Czech Republic ◽  
Hydrological Forecast

In central Europe, floods are natural disasters causing the greatest economic losses. One way to reduce partly the flood-related damage, especially the loss of lives, is a functional objective forecasting and warning system that incorporates both meteorological and hydrological models. Numerical weather prediction models operate with horizontal spatial resolution of several dozens of kilometres up to several kilometres, nevertheless, the common error in the localisation of the heavy rainfall characteristic maxima is mostly several times as large as the grid size. The distributive hydrological models for the middle sized basins (hundreds to thousands of km<sup>2</sup>) operate with the resolution of hundreds of meters. Therefore, the (in) accuracy of the meteorological forecast can heavily influence the following hydrological forecast. In general, we can say that the shorter is the duration of the given phenomenon and the smaller area it hits, the more difficult is its prediction. The time and spatial distribution of the predicted precipitation is still one of the most difficult tasks of meteorology. Hydrological forecasts are created under the conditions of great uncertainty. This paper deals with the possibilities of the current hydrology and meteorology with regard to the predictability of the flood events. The Czech Hydrometeorological Institute is responsible by law for the forecasting flood service in the Czech Republic. For the precipitation and temperature forecasts, the outputs of the numerical model of atmosphere ALADIN are used. Moreover, the meteorological community has available operational outputs of many weather prediction models, being run in several meteorological centres around the world. For the hydrological forecast, the HYDROG and AQUALOG models are utilised. The paper shows examples of the hydrological flood forecasts from the years 2002&ndash;2006 in the Dyje catchment, attention being paid to floods caused by heavy rainfalls in the summer season. The results show that it is necessary to take into account the predictability of the particular phenomenon, which can be used in the decision making process during an emergency.

scholarly journals Broad-spectrum detection of papillomaviruses in bovine teat papillomas and healthy teat skin

2004 ◽  
Vol 85 (8) ◽  
pp. 2191-2197 ◽  
Author(s):  
Tomoko Ogawa ◽  
Yoshimi Tomita ◽  
Mineyuki Okada ◽  
Kuniko Shinozaki ◽  
Hiroko Kubonoya ◽  
...  
Keyword(s):  
Amino Acid ◽  
Amino Acid Sequence ◽  
Broad Spectrum ◽  
Phylogenetic Analyses ◽  
Genomic Diversity ◽  
Bovine Papillomavirus ◽  
Subclinical Infection ◽  
Healthy Skin ◽  
Sequence Alignments ◽  
Spectrum Detection

To investigate the prevalence of bovine papillomavirus (BPV) in bovine papilloma and healthy skin, DNA extracted from teat papillomas and healthy teat skin swabs was analysed by PCR using the primer pairs FAP59/FAP64 and MY09/MY11. Papillomavirus (PV) DNA was detected in all 15 papilloma specimens using FAP59/FAP64 and in 8 of the 15 papilloma specimens using MY09/MY11. In swab samples, 21 and 8 of the 122 samples were PV DNA positive using FAP59/FAP64 and MY09/MY11, respectively. Four BPV types (BPV-1, -3, -5 and -6), two previously identified putative BPV types (BAA1 and -5) and 11 putative new PV types (designated BAPV1 to -10 and BAPV11MY) were found in the 39 PV DNA-positive samples. Amino acid sequence alignments of the putative new PV types with reported BPVs and phylogenetic analyses of the putative new PV types with human and animal PV types showed that BAPV1 to -10 and BAPV11MY are putative new BPV types. These results also showed the genomic diversity and extent of subclinical infection of BPV.

scholarly journals Phylogenetic Analysis of PDV Movement Protein Compared to Bromoviridae Members as Justification of Possible Intercellular Movement

2015 ◽  
Vol 57 (2) ◽  
pp. 106-114 ◽  
Author(s):  
Edmund Kozieł ◽  
Katarzyna Otulak ◽  
Grażyna Garbaczewska
Keyword(s):  
Amino Acid ◽  
Amino Acid Sequence ◽  
Phylogenetic Trees ◽  
Rna Binding ◽  
Movement Protein ◽  
Vegetative Reproduction ◽  
Amino Acid Level ◽  
Geographic Origin ◽  
Economic Losses ◽  
Phylogenetic Characterization

Abstract Prune dwarf virus (PDV) is a member of the Ilarvirus genus which is widely spread all over the world and causes considerable economic losses in nurseries and orchards. The virus is transmitted via seeds and pollen and through vegetative reproduction. However, the mechanisms of cell-to-cell and systemic transport of the virus are still not known. For the first time this study presents phylogenetic characterization of the movement protein (MP) of PDV isolates from the GenBank database in the context of geographic origin. The prepared analyses were based on a comparison of the whole amino acid sequence of the MP-PDV, the RNA-binding domain (RBD) in MP of PDV and MPs of four viruses from the Bromoviridae family with known transport mechanisms. Two different bioinformatic programs ClustalW and Jalview were used, and MP sequence variability up to 8% at the amino acid level among PDV isolates was confirmed. In the constructed phylogenetic trees the isolate sequences clustered in three conserved groups. Further analyses revealed similarity of the MP amino acid sequence of PDV and Alfalfa mosaic virus (AMV) of up to 34% and a 40% similarity of RBD between these viruses which suggested that the PDV transport mechanism may be on some level the same as that for AMV.

scholarly journals Methicillin-resistant Staphylococcus aureus in veterinary professionals in 2017 in the Czech Republic

2019 ◽  
Author(s):  
Katerina Neradova ◽  
Vladislav Jakubu ◽  
Katarina Pomorska ◽  
Helena Zemlickova
Keyword(s):  
Staphylococcus Aureus ◽  
Czech Republic ◽  
Methicillin Resistant Staphylococcus Aureus ◽  
Nasal Carriage ◽  
The Czech Republic ◽  
Methicillin Resistant ◽  
Nasal Swabs ◽  
Mrsa Strains ◽  
Healthcare Associated ◽  
Mrsa Colonization

Abstract Background Cases of colonization or infection caused by Methicillin-resistant Staphylococcus aureus (MRSA) are frequently reported in people who work with animals, including veterinary personnel. The aim of this study was to determine the prevalence of MRSA colonization among veterinary professionals. A total of 134 nasal swabs from healthy attendees of a veterinary conference held in the Czech Republic were tested for presence of MRSA. The stains were further genotypically and phenotypically characterized. Results Nine isolated MRSA strains were characterized with sequence type (ST), spa type (t) and Staphylococcal Cassette Chromosome mec type. Five different genotypes were described, including ST398-t011-IV (n=5), ST398-t2330-IV (n=1), ST398-t034-V (n=1), ST225-t003-II (n=1) and ST4894-t011-IV (n=1). The carriage of the animal MRSA strain was confirmed in 8 cases, characteristics of one strain corresponded to the possible nosocomial origin. Among animal strains were described three spa types (t011, t034, t2330) belonging into one dominating clonal complex CC11. Conclusion According to our results, the prevalence of nasal carriage of MRSA in veterinary personnel is 6.72%. Although we described an increase compared to the results of previous study (year 2008), the prevalence in the Czech Republic is still remaining lower than reported from neighboring countries. Our results also indicate that healthcare - associated MRSA strains are still not spread among animals.

scholarly journals Genomic analysis of Escherichia coli strains isolated from diseased chicken in the Czech Republic

2019 ◽  
Author(s):  
Aneta Papoušková ◽  
Martina Masaříková ◽  
Adam Valček ◽  
David Šenk ◽  
Darina Čejková ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Czech Republic ◽  
Economic Losses ◽  
Zoonotic Potential ◽  
Beta Lactamase ◽  
Phylogenetic Groups ◽  
The Czech Republic ◽  
E Coli ◽  
Molecular Features ◽  
Local Spread

Abstract Background: Avian pathogenic Escherichia coli (APEC) can cause various extraintestinal infections in poultry, resulting in massive economic losses in poultry industry. In addition, some avian E. coli strains may have zoonotic potential, making poultry a possible source of infection for humans. Due to its extreme genetic diversity, this pathotype remains poorly defined. This study aimed to investigate the diversity of colibacillosis-associated E. coli isolates from Central European countries with a focus on the Czech Republic. Results: Of 95 clinical isolates subjected to preliminary characterization, 32 were selected for whole-genome sequencing. A multi resistant phenotype was detected in a majority of the sequenced strains with the predominant resistance to β -lactams and quinolones being associated with TEM-type beta-lactamase genes and chromosomal gyrA mutations respectively. The phylogenetic analysis confirmed a great diversity of isolates, that were derived from nearly all phylogenetic groups, with predominace of B2, B1 and C phylogroups. Clusters of closely related isolates within ST23 (phylogroup C) and ST429 (phylogroup B2) indicated a possible local spread of these clones. Besides, the ST429 cluster carried blaCMY-2, -59 genes for AmpC beta-lactamase and isolates of both clusters were generally well-equipped with virulence-associated genes, with considerable differences in distribution of certain virulence-associated genes between phylogenetically distant lineages. Other important and potentially zoonotic APEC STs were detected, incl. ST117, ST354 and ST95, showing several molecular features typical for human ExPEC.Conclusions: The results support the concept of local spread of virulent APEC clones, as well as of zoonotic potential of specific poultry-associated lineages, and highlight the need to investigate the possible source of these pathogenic strains.

scholarly journals A crude capsular polysaccharide extract as a potential novel subunit vaccine with cross-protection against the most prevalent serovars of Glaesserella (Haemophilus) parasuis in the Czech Republic

2019 ◽  
Vol 64 (No. 9) ◽  
pp. 392-399
Author(s):  
K Matiaskova ◽  
K Nedbalcova ◽  
R Tesarik ◽  
H Kudlackova ◽  
J Gebauer ◽  
...  
Keyword(s):  
Czech Republic ◽  
Western Blotting ◽  
Subunit Vaccine ◽  
Capsular Polysaccharide ◽  
Systemic Disease ◽  
Elisa Test ◽  
Economic Losses ◽  
High Morbidity ◽  
Haemophilus Parasuis ◽  
The Czech Republic

Glaesserella (Haemophilus) parasuis is a part of the normal flora of the respiratory tract of pigs. However, under certain conditions it can also induce severe systemic disease with high morbidity and mortality leading to gross economic losses in the pig industry. The most prevalent serovars in pig herds in the Czech Republic are the virulent serovars 1, 4, 5 and 13. The currently available commercial vaccines are inactivated vaccines with certain limitations, such as no or poor cross-serovar protection. Therefore, the aim of the present study was to construct a subunit vaccine with a crude capsular polysaccharide extract (cCPS) isolated from G. parasuis CAPM 6475 (serovar 5) and evaluate its immunogenicity in a mouse model. Mice were immunised subcutaneously with two doses of the constructed vaccine in a 14-day interval and challenged intraperitoneally with various G. parasuis strains (serovars 1, 4, 5, 13) at 21 days after the second immunisation. The results of the ELISA test showed that the boost dose of the vaccine induced the production of IgG antibodies in high levels. On the basis of the death cases, the pathological findings and the bacterial isolation, the mice immunised with the cCPS were partially protected against the challenge with the homologous serovar 5 as well as with heterologous serovars 1, 4 and 13 of G. parasuis. The cross-reaction of the mixed serum from the immunised mice with the tested serovars was seen in the western-blotting also. Moreover, the most abundant protein found in the cCPS by mass spectrometry was catalase, a protein of molecular weight 55 kDa that may correspond to the strongest reaction seen in the western-blotting. Our findings indicated that the crude capsular polysaccharide extract may provide an effective immunogenicity in preventing a G. parasuis infection caused by the most prevalent serovars in the Czech Republic. However, the evaluation of the efficacy needs to be performed in pigs before any conclusions can be drawn.

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