​Re-sequencing of Whole Genome Jordanian Awassi Ewes using Hiseq Sequencing Technology: Major Step Towards Sheep Genomic Selection

2021 ◽  
Author(s):  
Hussein Migdadi ◽  
Nizar Haddad ◽  
Ruba AlOmari ◽  
Mohammad Brake ◽  
Mustafa AlShdaifat ◽  
...  
Keyword(s):  
Production Systems ◽  
Ovis Aries ◽  
Domestic Sheep ◽  
Major Step ◽  
Illumina Hiseq ◽  
Structure Variation ◽  
Awassi Sheep ◽  
Wide Range ◽  
Number Variation ◽  
Paired End Sequencing

Background: Jordanian Awassi sheep (Ovis aries) is the dominant fat tail sheep breed that appeals to customers because of its various production systems, including fiber, meat and milk. This report is the first whole ewe genome sequence (WGS) of O. aries submitted in the NCBI database from Jordan. Methods: 64 Paired-end sequencing libraries were constructed and subjected to Illumina Hiseq 2500 sequencing system. High-quality reads were aligned against the reference sheep genome and detecting comprehensive sources (SNPs, InDels, SV, CNVs) of genetic variations. We have deposited data sequences at the NCBI under SRA (sequence reads archives) under the accession numbers SRR11128863, PRJNA574879. Result: Genome resequencing of Jordanian Awassi ewe was carried out with approximately 93.88 Gb with a mapping rate and effective mapping depths were 99.28% and 36.32. Around 19 million SNPs, 3,6 million InDels, 35,180 Structure variation and 13,524 copy number variation among the Jordanian ewe genome were detected. This wide range of genetic variation provides a framework for further genetic studies that will help understand the molecular basis underlying phenotypic variation of economically important traits in sheep and improve intrinsic defects in domestic sheep breeds.

scholarly journals Use of simulation model for measurement of MilkRun system performance

2019 ◽  
Vol 9 (1) ◽  
pp. 600-605 ◽  
Author(s):  
Gabriel Fedorko ◽  
Martin Vasil ◽  
Michaela Bartosova
Keyword(s):  
Simulation Model ◽  
Production Systems ◽  
Operational Performance ◽  
Transport Systems ◽  
Indirect Methods ◽  
Operational Characteristics ◽  
Wide Range ◽  
Effective Operation ◽  
And Performance ◽  
Plant Simulation

AbstractIntra-plant transport systems within their operation directly impact on the performance of production systems. For their effective operation, it is, therefore, necessary to realize evaluation of operational performance and effectivity. For the realization of this type of evaluation, in addition to a wide range of sensors that can be difficult for installation and operation, we can also use indirect methods that are equally able to provide reliable operational characteristics. Indirect analytical methods are presented above all by the approach which is based on the use of simulation methods. The method of computer simulation provides a wide range of options for the evaluation of efficiency and performance. The paper describes the use of a simulation model created in the program Tecnomatix Plant Simulation for analyzing the supply of production workplaces within the MilkRun system.

scholarly journals Seed conditioning of red oak: a recalcitrant North American seed

1998 ◽  
Vol 55 (spe) ◽  
pp. 67-73 ◽  
Author(s):  
D.K. Struve
Keyword(s):  
North American ◽  
Seed Quality ◽  
Quercus Rubra ◽  
Production Systems ◽  
Red Oak ◽  
High Quality ◽  
Stand Establishment ◽  
Conditioning Treatment ◽  
Wide Range ◽  
Seed Conditioning

A ten day aerated water soak was developed as a seed conditioning treatment for red oak (Quercus rubra L.). Conditioned seeds had higher germination completeness, uniformity and speed compared to control seeds. Seeds could be conditioned under a wide range of temperatures and durations. Conditioned seeds were maintained at 7(0)C for 30 days without loss of seed quality. During conditioning, pericarps split in response to seed hydration. Split pericarps could be used as a pre-sowing indicator for high quality seeds. Seed conditioning was ineffective on dormant seeds. Increased crop uniformity and higher stand establishment can be realized by subjecting red oak acorns to an aerated water soak treatment followed by selecting seeds with split pericarps. These results are especially important in container production systems where limited numbers of value seeds are available.

Field metabolic rate and water turnover of red kangaroos and sheep in an arid rangeland: an empirically derived dry-sheep-equivalent for kangaroos

2009 ◽  
Vol 57 (1) ◽  
pp. 23 ◽  
Author(s):  
A. J. Munn ◽  
T. J. Dawson ◽  
S. R. McLeod ◽  
D. B. Croft ◽  
M. B. Thompson ◽  
...  
Keyword(s):  
Metabolic Rate ◽  
Grazing Pressure ◽  
Ovis Aries ◽  
Domestic Sheep ◽  
Detailed Knowledge ◽  
Water Turnover ◽  
Field Metabolic Rate ◽  
Red Kangaroo ◽  
Resource Requirements ◽  
Comparative Measure

Sustainable management of pastures requires detailed knowledge of total grazing pressure, but this information is critically lacking in Australia’s rangelands where livestock co-occur with large herbivorous marsupials. We present the first comparative measure of the field metabolic rate (an index of food requirement) of Australia’s largest marsupial, the red kangaroo (Macropus rufus), with that of domestic sheep (Ovis aries; merino breed). We tested the assumption that the grazing pressure of red kangaroos is equivalent to 0.7 sheep, and show this to be a two-fold overestimation of their contribution to total grazing. Moreover, kangaroos had extraordinarily lower rates of water turnover, being only 13% that of sheep. Consequently, our data support arguments that the removal of kangaroos may not markedly improve rangeland capacity for domestic stock. Furthermore, given the low resource requirements of kangaroos, their use in consumptive and non-consumptive enterprises can provide additional benefits for Australia’s rangelands than may occur under traditional rangeland practices.

scholarly journals Flexibility of production systems and prepare-finish time

2006 ◽  
pp. 23-30 ◽  
Author(s):  
Milan Vukicevic
Keyword(s):  
Production System ◽  
Mass Production ◽  
Production Systems ◽  
Production Cycle ◽  
Finish Time ◽  
Significant Element ◽  
Wide Range ◽  
Eastern Japan

One of the specificities of the large-serial and mass production is the almost neglected percentage of prepare-finish time in the production cycle. In the conditions of today dominant discontinuous production, it becomes a significant element of the production cycle. The eastern (Japan) doctrine of increasing the flexibility of the production systems, is based inter alia also on the extreme reduction of the prepare-finish time. For this reason, the aim of this study was to identify the types and percentages of individual jobs within the group of prepare-finish jobs. The sample consisted of 3 (three) production systems for the production of joinery, with the discontinuous production system. The research shows that the percentage of time of the jobs installation of work instruments, regulation of processing regime, and removal of work instruments is extremely long and that it ranges between 11.83% and 18.93% of the shift time. The reasons of the high percentage of these jobs are the wide range of products and the absence of the rationalisation of prepare-finish jobs. Within the efforts to minimize the effects of disruption and to increase the flexibility of the production systems, the rationalisation of prepare-finish jobs is the unavoidable condition.

Description of Diploplastron dehorityi sp. nov. (Entodiniomorphida, Ophryoscolecidae), a new rumen ciliate from Brazilian sheep (Ovis aries)

Zootaxa ◽  
2017 ◽  
Vol 4258 (6) ◽  
pp. 581 ◽  
Author(s):  
FRANCIANE CEDROLA ◽  
ROBERTO JÚNIO PEDROSO DIAS ◽  
ISABEL MARTINELE ◽  
MARTA D’AGOSTO
Keyword(s):  
New Species ◽  
Body Shape ◽  
The Body ◽  
Ovis Aries ◽  
Domestic Sheep ◽  
Diagnostic Features ◽  
Ciliate Community ◽  
The Right ◽  
A New Species

To date the genus Diploplastron comprised only one species of ophryoscolecid ciliate, Diploplastron affine, which is characterized by having two retractable ciliary zones in the anterior end of the body, two slender and juxtaposed skeletal plates on the right side, a rod shape macronucleus, and two contractile vacuoles. During study on the characterization of rumen ciliate community composition in Brazilian domestic sheep, we observed ciliates with atypical morphology but with diagnostic features of genus Diploplastron. This study describes Diploplastron dehorityi, a new species of ophryoscolecid ciliate, that differs from D. affine, primarily, in the morphology of skeletal plates, morphology of nuclear apparatus and body shape. In addition to the similarities between the new species and congener species, D. dehorityi has some morphological similarities to species of genus Eremoplastron.

scholarly journals Differences in leukocyte differentiation molecule abundances on domestic sheep (Ovis aries) and bighorn sheep (Ovis canadensis) neutrophils identified by flow cytometry

2016 ◽  
Vol 46 ◽  
pp. 40-46 ◽  
Author(s):  
Margaret A. Highland ◽  
David A. Schneider ◽  
Stephen N. White ◽  
Sally A. Madsen-Bouterse ◽  
Donald P. Knowles ◽  
...  
Keyword(s):  
Flow Cytometry ◽  
Bighorn Sheep ◽  
Ovis Canadensis ◽  
Ovis Aries ◽  
Domestic Sheep

scholarly journals Comparison of Passively Transferred Antibodies in Bighorn and Domestic Lambs Reveals One Factor in Differential Susceptibility of These Species to Mannheimia haemolytica-Induced Pneumonia

2011 ◽  
Vol 18 (7) ◽  
pp. 1133-1138 ◽  
Author(s):  
Caroline N. Herndon ◽  
Sudarvili Shanthalingam ◽  
Donald P. Knowles ◽  
Douglas R. Call ◽  
Subramaniam Srikumaran
Keyword(s):  
Differential Susceptibility ◽  
Critical Factor ◽  
Surface Antigens ◽  
Ovis Canadensis ◽  
Ovis Aries ◽  
Mannheimia Haemolytica ◽  
Domestic Sheep ◽  
Experimental Conditions ◽  
Content Type ◽  
Impaired Ability

ABSTRACTMannheimia haemolyticaconsistently causes fatal bronchopneumonia in bighorn sheep (BHS;Ovis canadensis) under natural and experimental conditions. Leukotoxin is the primary virulence factor of this organism. BHS are more susceptible to developing fatal pneumonia than the related speciesOvis aries(domestic sheep [DS]). In BHS herds affected by pneumonia, lamb recruitment is severely impaired for years subsequent to an outbreak. We hypothesized that a lack of maternally derived antibodies (Abs) againstM. haemolyticaprovides an immunologic basis for enhanced susceptibility of BH lambs to population-limiting pneumonia. Therefore, the objective of this study was to determine the titers of Abs directed againstM. haemolyticain the sera of BH and domestic lambs at birth through 12 weeks of age. Results revealed that BH lambs had approximately 18-fold lower titers of Ab against surface antigens ofM. haemolyticaand approximately 20-fold lower titers of leukotoxin-neutralizing Abs than domestic lambs. The titers of leukotoxin-neutralizing Abs in the serum and colostrum samples of BH ewes were approximately 157- and 50-fold lower than those for domestic ewes, respectively. Comparatively, the higher titers of parainfluenza 3 virus-neutralizing Abs in the BH lambs ruled out the possibility that these BHS had an impaired ability to passively transfer Abs to their lambs. These results suggest that lower levels of leukotoxin-neutralizing Abs in the sera of BH ewes, and resultant low Ab titers in their lambs, may be a critical factor in the poor lamb recruitment in herds affected by pneumonia.

PRODUCTION SYSTEM-SPECIFIC DIFFERENCES IN FARMERS' DEMAND FOR GREATER YAM (DIOSCOREA ALATA) VARIETAL ATTRIBUTES IN ORISSA STATE, INDIA

2009 ◽  
Vol 45 (4) ◽  
pp. 469-482
Author(s):  
P. SETHURAMAN SIVAKUMAR ◽  
M. NEDUNCHEZHIYAN ◽  
S. PARAMAGURU ◽  
R. C. RAY
Keyword(s):  
Production System ◽  
Production Systems ◽  
High Impact ◽  
Dioscorea Alata ◽  
Subsistence Farmers ◽  
Improved Varieties ◽  
Resistant Cultivars ◽  
Wide Range ◽  
Greater Yam

SUMMARYGreater yam (Dioscorea alata), a popular crop in India, is cultivated widely in Orissa state, India. In spite of the availability of several improved varieties, farmers preferred the local landraces. An investigation was carried out to identify whether the varietal preferences of yam farmers in two production systems, subsistence and commercial, were different. While the subsistence farmers demanded the yam varieties adaptable to a wide range of soils, the commercial farmers preferred the anthracnose-resistant cultivars. This study demonstrated that the farmers' varietal preferences were highly influenced by the production systems. Identifying the convergence/divergence of varietal preferences across production systems can help breeders to develop the high impact varieties.

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